View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10718_low_22 (Length: 209)
Name: NF10718_low_22
Description: NF10718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10718_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 151; Significance: 4e-80; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 31 - 189
Target Start/End: Original strand, 23470858 - 23471016
Alignment:
| Q |
31 |
acacgaaatataaatagatagatacgataaaatattctattgaatatccagaactgattttattgattagtagtatattctttgaacagctagtttgtta |
130 |
Q |
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| T |
23470858 |
acacgaaatataaatagatagatacgataaaatattctattgaatgtccagaactgattttattgattagtagtatattctttgaacagctagtttgtta |
23470957 |
T |
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| Q |
131 |
tttctgtttagaagcttctattctatttaatcatgactgtgtagttcaattagagtggt |
189 |
Q |
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| T |
23470958 |
tttctgtttagaaccttctattctatttaatcatgactgtgtagttcaattagagtggt |
23471016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 71 - 198
Target Start/End: Original strand, 23435374 - 23435501
Alignment:
| Q |
71 |
tgaatatccagaactgattttattgattagtagtatattctttgaacagctagtttgttatttctgtttagaagcttctattctatttaatcatgactgt |
170 |
Q |
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| T |
23435374 |
tgaatgtccagaactgattttattgattactagtatattctttgaacagctagtttgttagtgctgtttagaagcttctattctatttaatcatgactgt |
23435473 |
T |
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| Q |
171 |
gtagttcaattagagtggtggttggttg |
198 |
Q |
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| T |
23435474 |
gtagttcaattagagtggtggttggttg |
23435501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 31 - 65
Target Start/End: Original strand, 23431195 - 23431229
Alignment:
| Q |
31 |
acacgaaatataaatagatagatacgataaaatat |
65 |
Q |
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| T |
23431195 |
acacgaaatataaatagatagatacgataaaatat |
23431229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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