View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10718_low_3 (Length: 425)
Name: NF10718_low_3
Description: NF10718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10718_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 15 - 409
Target Start/End: Complemental strand, 5467309 - 5466919
Alignment:
| Q |
15 |
agttcatcccccagcttgactttgtgtatgaacaacataaagggaagaggtatagaactctgaggcggaggtactgattgtatccattgatcaaattatg |
114 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
5467309 |
agttcatcccccagcttgattttgtgtatgaacaacataaagggaagaggtatagaactctgaggcggaggtactgattgtatccattgatcagattatg |
5467210 |
T |
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| Q |
115 |
nnnnnnntaataatggttttgagttgtactacatgtttgtgtgtatttatttattttttgaataacatgattgtgtgtatttagtattattaatcggtgt |
214 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
5467209 |
aaaaaaataataatggttttcagttgtactacatgtttgtgtgtatttatttattttttgaataacatgtttgtgtgtatttagtattattaa---gtgt |
5467113 |
T |
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| Q |
215 |
ttatgatgcgcaatgatgtattttcttttgggtgttccgtctatatacggtgccattttttatgtagttgttttgctggtctccgttcgtcttatgcaag |
314 |
Q |
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| T |
5467112 |
ttatgatgtacaatgatgtattttcttttgggtgttccatctatatacggcgccattttttatgtagttgttttgctggtctccgttcgtcttgtgcaag |
5467013 |
T |
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| Q |
315 |
agattggttattaataaattttatcctttagaaatatacatataggtttctttccttgttttgaatttgataattagctctccatcaaatgatgt |
409 |
Q |
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| T |
5467012 |
agtttggttattaataaattttatcctttag-aatatacatataggtttctttccttgtattgaatttgataattatctctccatcaaatgatgt |
5466919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 5355376 - 5355455
Alignment:
| Q |
16 |
gttcatcccccagcttgactttgtgtatgaacaacataaagggaagaggtatagaactctgaggcggaggtactgattgt |
95 |
Q |
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| T |
5355376 |
gttcatcccccagctagattttgtgtatgaacagcatgaagggaagaggtatagaactctgaggtggaggtactgattgt |
5355455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 5345688 - 5345615
Alignment:
| Q |
16 |
gttcatcccccagcttgactttgtgtatgaacaacataaagggaagaggtatagaactctgaggcggaggtact |
89 |
Q |
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||||||||||||||| || |||||||||||||||||| |||||| |||||||||| |||| ||| |||| |||| |
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| T |
5345688 |
gttcatcccccagctagattttgtgtatgaacaacatcaagggatgaggtatagatctctaaggtggagatact |
5345615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 5423005 - 5422932
Alignment:
| Q |
16 |
gttcatcccccagcttgactttgtgtatgaacaacataaagggaagaggtatagaactctgaggcggaggtact |
89 |
Q |
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| T |
5423005 |
gttcatcccccagctagattttgtgtatgaacagcatgaagggaagaggtgtagatctctaaggtggaggtact |
5422932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 5363854 - 5363918
Alignment:
| Q |
20 |
atcccccagcttgactttgtgtatgaacaacataaagggaagaggtatagaactctgaggcggag |
84 |
Q |
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| T |
5363854 |
atcccccagctagattttgtgtatgaacagcatgaagggaagaggtatagaactctaaggtggag |
5363918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 5379712 - 5379785
Alignment:
| Q |
16 |
gttcatcccccagcttgactttgtgtatgaacaacataaagggaagaggtatagaactctgaggcggaggtact |
89 |
Q |
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|||| |||||||||| || |||||||||||||| || ||||||||||||||||| |||| ||| ||||||||| |
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| T |
5379712 |
gttcctcccccagctagattttgtgtatgaacagcaggaagggaagaggtatagatctctaaggtggaggtact |
5379785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 94
Target Start/End: Original strand, 5357503 - 5357568
Alignment:
| Q |
29 |
cttgactttgtgtatgaacaacataaagggaagaggtatagaactctgaggcggaggtactgattg |
94 |
Q |
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| T |
5357503 |
cttgattttgtgtatgaacagcatgaagggaagaggtacagaactttaaggtggagatactgattg |
5357568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 5503244 - 5503321
Alignment:
| Q |
18 |
tcatcccccagcttgactttgtgtatgaacaacataaagggaagaggtatagaactctgaggcggaggtactgattgt |
95 |
Q |
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| T |
5503244 |
tcatccctcaacttgattttgtgtttgaacaacatgaagggaagaggtacaaaattttgaggtggagttactgattgt |
5503321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 5394009 - 5394056
Alignment:
| Q |
16 |
gttcatcccccagcttgactttgtgtatgaacaacataaagggaagag |
63 |
Q |
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||||||||||| ||| || |||||||||||||||||| |||||||||| |
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| T |
5394009 |
gttcatcccccggctagattttgtgtatgaacaacatgaagggaagag |
5394056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 5413458 - 5413505
Alignment:
| Q |
16 |
gttcatcccccagcttgactttgtgtatgaacaacataaagggaagag |
63 |
Q |
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||||||||||| ||| || |||||||||||||||||| |||||||||| |
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| T |
5413458 |
gttcatcccccggctagattttgtgtatgaacaacatgaagggaagag |
5413505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 20329897 - 20329970
Alignment:
| Q |
16 |
gttcatcccccagcttgactttgtgtatgaacaacataaagggaagaggtatagaactctgaggcggaggtact |
89 |
Q |
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||||||||||||||| || |||||||||||||| ||| |||||||||||| |||| |||| ||| ||||||||| |
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| T |
20329897 |
gttcatcccccagctagattttgtgtatgaacagcatgaagggaagaggtgtagatctctaaggtggaggtact |
20329970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 268
Target Start/End: Complemental strand, 930650 - 930616
Alignment:
| Q |
234 |
attttcttttgggtgttccgtctatatacggtgcc |
268 |
Q |
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|||||||||||||||||||| |||||||||||||| |
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| T |
930650 |
attttcttttgggtgttccgcctatatacggtgcc |
930616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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