View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10718_low_4 (Length: 421)

Name: NF10718_low_4
Description: NF10718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10718_low_4
NF10718_low_4
[»] chr4 (7 HSPs)
chr4 (7-120)||(10426819-10426932)
chr4 (118-213)||(10427623-10427718)
chr4 (118-212)||(9199750-9199845)
chr4 (151-212)||(9199512-9199573)
chr4 (118-169)||(9201332-9201384)
chr4 (151-212)||(12094864-12094925)
chr4 (151-212)||(24257703-24257764)
[»] chr8 (5 HSPs)
chr8 (118-213)||(26981034-26981130)
chr8 (118-212)||(26083903-26083998)
chr8 (123-212)||(5334273-5334363)
chr8 (155-212)||(42932716-42932773)
chr8 (182-214)||(7496756-7496788)
[»] chr7 (5 HSPs)
chr7 (118-212)||(20077317-20077412)
chr7 (1-86)||(4410741-4410826)
chr7 (118-212)||(4407779-4407872)
chr7 (124-205)||(30061499-30061581)
chr7 (88-116)||(4407898-4407926)
[»] chr6 (3 HSPs)
chr6 (121-213)||(31442516-31442609)
chr6 (126-212)||(20915980-20916067)
chr6 (143-212)||(7867948-7868018)
[»] chr5 (2 HSPs)
chr5 (123-212)||(6697935-6698025)
chr5 (118-175)||(9045160-9045218)
[»] chr3 (4 HSPs)
chr3 (118-187)||(11582599-11582669)
chr3 (159-215)||(2241513-2241569)
chr3 (136-214)||(39484801-39484881)
chr3 (143-213)||(15291460-15291530)
[»] chr2 (3 HSPs)
chr2 (141-212)||(38996518-38996590)
chr2 (141-213)||(22625385-22625458)
chr2 (143-212)||(28125536-28125606)


Alignment Details
Target: chr4 (Bit Score: 114; Significance: 1e-57; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 7 - 120
Target Start/End: Original strand, 10426819 - 10426932
Alignment:
Q  7 aggagaagctaccaaggatattttcaacttcccttacatttacgatgcagcttatatttattaagataagattagtgcatcaagtcacatgttaagaagg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10426819 aggagaagctaccaaggatattttcaacttcccttacatttacgatgcagcttatatttattaagataagattagtgcatcaagtcacatgttaagaagg 10426918  T
Q  107 tagcaatgaaccta 120  Q
    ||||||||||||||    
T  10426919 tagcaatgaaccta 10426932  T

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Target: chr4; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 118 - 213
Target Start/End: Original strand, 10427623 - 10427718
Alignment:
Q  118 ctaaggagaatttaatacttggatgatggagggaaatattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagata 213  Q
    ||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| || ||||| ||| |||||||    
T  10427623 ctaagaagaatttaatgcttggatgatggagggaaatattaggttaaaattagggtatgatattgcttgaccaaacaacctttaataaaaaagata 10427718  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 118 - 212
Target Start/End: Complemental strand, 9199845 - 9199750
Alignment:
Q  118 ctaaggagaatttaatacttggatgatggaggg-aaatattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 212  Q
    |||||||||||||||| |||||||||||||||| |||||||| ||||| | | || ||||||||||||||| || | |||||||||||||||||||    
T  9199845 ctaaggagaatttaatgcttggatgatggagggaaaatattaggttaatagtgggatatgatattgcttgaccagacaagctttagtaagaaagat 9199750  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 151 - 212
Target Start/End: Complemental strand, 9199573 - 9199512
Alignment:
Q  151 aaatattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 212  Q
    |||||||| |||||||||||||||||||||||||||| || | |||||||||||||||||||    
T  9199573 aaatattaggttaaaattagggtatgatattgcttgaccagacaagctttagtaagaaagat 9199512  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 169
Target Start/End: Complemental strand, 9201384 - 9201332
Alignment:
Q  118 ctaaggagaatttaatacttggatgatggaggg-aaatattaagttaaaatta 169  Q
    |||||||||||||||| |||||||||||| ||| |||||||| ||||||||||    
T  9201384 ctaaggagaatttaatgcttggatgatggtgggaaaatattaggttaaaatta 9201332  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 212
Target Start/End: Original strand, 12094864 - 12094925
Alignment:
Q  151 aaatattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 212  Q
    |||||||| |||||||||||||| |   || |||||| |||| |||||||||||||||||||    
T  12094864 aaatattaggttaaaattagggtttctaatagcttgaccaaacaagctttagtaagaaagat 12094925  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 212
Target Start/End: Complemental strand, 24257764 - 24257703
Alignment:
Q  151 aaatattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 212  Q
    |||||||| ||||||||||||||     ||||||||| |||| |||||||||||||||||||    
T  24257764 aaatattaggttaaaattagggtgaacaattgcttgaccaaacaagctttagtaagaaagat 24257703  T

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Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 118 - 213
Target Start/End: Complemental strand, 26981130 - 26981034
Alignment:
Q  118 ctaaggagaatttaatacttggatgatggagggaaa-tattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagata 213  Q
    |||||||||||||||| ||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  26981130 ctaaggagaatttaatgcttggatgatggaggaaaaatattaggttaaaattagggtatgatattgcttgatcaaacaagctttagtaagaaagata 26981034  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 118 - 212
Target Start/End: Complemental strand, 26083998 - 26083903
Alignment:
Q  118 ctaaggagaatttaatacttggatgatggagggaaa-tattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 212  Q
    ||||| |||||||||| ||| ||||||||||||||| ||||| |||||||||||||||||||||||||||| || | |||||||||||||||||||    
T  26083998 ctaagaagaatttaatgctttgatgatggagggaaaatattaggttaaaattagggtatgatattgcttgaccagacaagctttagtaagaaagat 26083903  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 123 - 212
Target Start/End: Complemental strand, 5334363 - 5334273
Alignment:
Q  123 gagaatttaatacttggatgatggagggaaa-tattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 212  Q
    ||||||||||| ||||||||||||||||||| | ||| ||||||||||||||||||||||| ||||||| | ||  |||| ||||||||||    
T  5334363 gagaatttaatgcttggatgatggagggaaaatcttaggttaaaattagggtatgatattgtttgatcagataatttttaataagaaagat 5334273  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 155 - 212
Target Start/End: Complemental strand, 42932773 - 42932716
Alignment:
Q  155 attaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 212  Q
    |||| |||||||||||| |||||||||||||||||| | |||||||||||||||||||    
T  42932773 attaggttaaaattaggatatgatattgcttgatcagacaagctttagtaagaaagat 42932716  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 214
Target Start/End: Complemental strand, 7496788 - 7496756
Alignment:
Q  182 gcttgatcaaagaagctttagtaagaaagataa 214  Q
    ||||||||||| |||||||||||||||||||||    
T  7496788 gcttgatcaaacaagctttagtaagaaagataa 7496756  T

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Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 118 - 212
Target Start/End: Original strand, 20077317 - 20077412
Alignment:
Q  118 ctaaggagaatttaatacttggatgatggagggaaa-tattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 212  Q
    |||||| ||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  20077317 ctaaggtgaatttaatgcttggatgatggagggaaaatattaggttaaaattagggtatgatattgcttgaccaaacaagctttagtaagaaagat 20077412  T

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Target: chr7; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 4410826 - 4410741
Alignment:
Q  1 gcacataggagaagctaccaaggatattttcaacttcccttacatttacgatgcagcttatatttattaagataagattagtgcat 86  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||| ||||    
T  4410826 gcacaaaggagaagctaccaaggatattttcaactttccttacatttacgatgcaacttatgtttattaagataagattagcgcat 4410741  T

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Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 118 - 212
Target Start/End: Complemental strand, 4407872 - 4407779
Alignment:
Q  118 ctaaggagaatttaatacttggatgatggagggaaa-tattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 212  Q
    ||||||||||||||||  |||| ||||||||||||| ||||| |||||||||||||||||||||||||||| |  ||| |||||||||||||||||    
T  4407872 ctaaggagaatttaatgtttgggtgatggagggaaaatattaggttaaaattagggtatgatattgcttgacc--agacgctttagtaagaaagat 4407779  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 205
Target Start/End: Complemental strand, 30061581 - 30061499
Alignment:
Q  124 agaatttaatacttggatgatggagggaaa-tattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaa 205  Q
    |||||| |||||||| |  ||||||||||| ||||| | | |||||||||||||| || ||||||||| | ||||||||||||    
T  30061581 agaattaaatacttgtacaatggagggaaaatattagggttaaattagggtatgagatagcttgatcagacaagctttagtaa 30061499  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 116
Target Start/End: Complemental strand, 4407926 - 4407898
Alignment:
Q  88 aagtcacatgttaagaaggtagcaatgaa 116  Q
    |||||||||||||||||||||||||||||    
T  4407926 aagtcacatgttaagaaggtagcaatgaa 4407898  T

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Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 121 - 213
Target Start/End: Complemental strand, 31442609 - 31442516
Alignment:
Q  121 aggagaatttaatacttggatgatggagggaaa-tattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagata 213  Q
    ||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||  ||||||||| |||| ||||||||||||||||||||    
T  31442609 aggagaatttaatgcttggatgatggagggaaaatattaggttaaaattagggtatgtgattgcttgaccaaacaagctttagtaagaaagata 31442516  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 126 - 212
Target Start/End: Original strand, 20915980 - 20916067
Alignment:
Q  126 aatttaatacttggatgatggagggaaa-tattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 212  Q
    |||||||| ||||||||||||||||||| ||||| |||||||||| ||||| |||||||||||||| | |||||||||||||||||||    
T  20915980 aatttaatgcttggatgatggagggaaaatattaggttaaaattaaggtatcatattgcttgatcagacaagctttagtaagaaagat 20916067  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 212
Target Start/End: Original strand, 7867948 - 7868018
Alignment:
Q  143 atggagggaaa-tattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 212  Q
    ||||||||||| ||||| | | |||||||||||||| || |||||| || | |||||||||||||||||||    
T  7867948 atggagggaaaatattagggttaaattagggtatgagatagcttgaccagataagctttagtaagaaagat 7868018  T

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Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 123 - 212
Target Start/End: Complemental strand, 6698025 - 6697935
Alignment:
Q  123 gagaatttaatacttggatgatggagggaaa-tattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 212  Q
    ||||||||||| |||| |||||||||||||| ||||| |||||||||| ||||||| ||||||||| || | ||| |||||||||||||||    
T  6698025 gagaatttaatgcttgcatgatggagggaaaatattaggttaaaattaaggtatgagattgcttgaccagacaagttttagtaagaaagat 6697935  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 118 - 175
Target Start/End: Complemental strand, 9045218 - 9045160
Alignment:
Q  118 ctaaggagaatttaatacttggatgatggaggg-aaatattaagttaaaattagggtat 175  Q
    ||||||||||||||||  || |||||||||||| |||||||| ||||||||||||||||    
T  9045218 ctaaggagaatttaatgttttgatgatggagggaaaatattaggttaaaattagggtat 9045160  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 118 - 187
Target Start/End: Complemental strand, 11582669 - 11582599
Alignment:
Q  118 ctaaggagaatttaatacttggatgatggagggaaa-tattaagttaaaattagggtatgatattgcttga 187  Q
    ||||| ||||||||||  |||||||| ||||||||| ||||| ||||||||||||||||||||||||||||    
T  11582669 ctaagaagaatttaatgtttggatgacggagggaaaatattaggttaaaattagggtatgatattgcttga 11582599  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 215
Target Start/End: Original strand, 2241513 - 2241569
Alignment:
Q  159 agttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagataag 215  Q
    ||||||||||| ||||||| |||||||||  ||| |||||||||||||||| |||||    
T  2241513 agttaaaattaaggtatgaaattgcttgacgaaacaagctttagtaagaaaaataag 2241569  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 214
Target Start/End: Original strand, 39484801 - 39484881
Alignment:
Q  136 ttggatgatggagggaaa-tattaagttaaaattagggt-atgatattgcttgatcaaagaagctttagtaagaaagataa 214  Q
    |||| ||||||||||||| ||||| ||||||| |||||| |  |||| |||||| |||| |||||||||||||||||||||    
T  39484801 ttgggtgatggagggaaaatattaggttaaaactagggtgaacatatagcttgaccaaacaagctttagtaagaaagataa 39484881  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 213
Target Start/End: Complemental strand, 15291530 - 15291460
Alignment:
Q  143 atggagggaaatattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagata 213  Q
    ||||||||||| |||| ||||| |||||||||    || |||||| |||| ||||||||||||||||||||    
T  15291530 atggagggaaaaattaggttaagattagggtaaacaatagcttgaccaaacaagctttagtaagaaagata 15291460  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 141 - 212
Target Start/End: Original strand, 38996518 - 38996590
Alignment:
Q  141 tgatggagggaaa-tattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 212  Q
    ||||||||||||| ||||| |||||||||||||||  |||| ||||||||| | |||||||||||||||||||    
T  38996518 tgatggagggaaaatattaggttaaaattagggtaacatatagcttgatcagacaagctttagtaagaaagat 38996590  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 141 - 213
Target Start/End: Original strand, 22625385 - 22625458
Alignment:
Q  141 tgatggagggaaa-tattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagata 213  Q
    ||||||||||||| ||||| ||||||||||||||||   ||||||||| || | ||| ||||||||||||||||    
T  22625385 tgatggagggaaaatattaggttaaaattagggtatccaattgcttgaccagacaagttttagtaagaaagata 22625458  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 212
Target Start/End: Complemental strand, 28125606 - 28125536
Alignment:
Q  143 atggagggaaa-tattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 212  Q
    ||||||||||| ||||| | | |||||||||||||| || |||||| || | |||||||||||||||||||    
T  28125606 atggagggaaaatattagggttaaattagggtatgagatagcttgaccagacaagctttagtaagaaagat 28125536  T

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