View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10718_low_5 (Length: 419)

Name: NF10718_low_5
Description: NF10718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10718_low_5
NF10718_low_5
[»] chr1 (32 HSPs)
chr1 (20-409)||(9385660-9386057)
chr1 (203-328)||(28455875-28456002)
chr1 (203-328)||(32007075-32007202)
chr1 (203-328)||(45813011-45813138)
chr1 (27-149)||(9232583-9232705)
chr1 (203-326)||(778578-778702)
chr1 (203-328)||(5055788-5055915)
chr1 (203-328)||(29994383-29994510)
chr1 (203-328)||(41808203-41808330)
chr1 (203-328)||(20749-20876)
chr1 (203-328)||(48660023-48660150)
chr1 (203-296)||(7059501-7059595)
chr1 (203-328)||(5943682-5943809)
chr1 (203-328)||(41761411-41761538)
chr1 (204-328)||(35945798-35945924)
chr1 (203-273)||(41039303-41039373)
chr1 (203-322)||(39276357-39276478)
chr1 (206-328)||(2088908-2089032)
chr1 (203-328)||(49783708-49783835)
chr1 (207-328)||(50106200-50106323)
chr1 (203-273)||(4066019-4066089)
chr1 (206-256)||(13183179-13183229)
chr1 (238-326)||(29587255-29587345)
chr1 (203-256)||(13109845-13109898)
chr1 (203-283)||(26032848-26032929)
chr1 (203-328)||(192416-192543)
chr1 (203-273)||(35110099-35110169)
chr1 (203-256)||(13097379-13097432)
chr1 (203-328)||(46447373-46447504)
chr1 (207-271)||(39228492-39228554)
chr1 (206-328)||(7275682-7275806)
chr1 (204-256)||(26264537-26264589)
[»] chr7 (34 HSPs)
chr7 (203-328)||(47557782-47557909)
chr7 (203-328)||(25112247-25112374)
chr7 (203-328)||(25546275-25546402)
chr7 (203-328)||(2146637-2146764)
chr7 (203-328)||(4106739-4106866)
chr7 (203-328)||(23358186-23358313)
chr7 (203-328)||(31770532-31770659)
chr7 (203-328)||(40058239-40058366)
chr7 (204-325)||(43753754-43753878)
chr7 (206-328)||(44083941-44084065)
chr7 (203-328)||(27915580-27915708)
chr7 (203-316)||(4107322-4107437)
chr7 (203-296)||(48146787-48146881)
chr7 (213-323)||(27229487-27229600)
chr7 (203-330)||(47250251-47250380)
chr7 (203-328)||(32606330-32606457)
chr7 (227-328)||(47960979-47961082)
chr7 (203-273)||(38781208-38781278)
chr7 (203-273)||(47570718-47570788)
chr7 (203-326)||(8439081-8439206)
chr7 (203-268)||(11355886-11355951)
chr7 (203-322)||(29484755-29484876)
chr7 (203-328)||(7162790-7162915)
chr7 (203-328)||(25872764-25872891)
chr7 (207-328)||(38033730-38033853)
chr7 (203-273)||(42081619-42081686)
chr7 (216-328)||(25049971-25050085)
chr7 (203-283)||(48444152-48444233)
chr7 (212-260)||(34763513-34763561)
chr7 (203-328)||(5772819-5772946)
chr7 (218-326)||(13887174-13887282)
chr7 (203-313)||(41183831-41183943)
chr7 (203-273)||(5587338-5587408)
chr7 (203-273)||(5592299-5592369)
[»] scaffold0032 (1 HSPs)
scaffold0032 (203-328)||(56482-56609)
[»] chr2 (28 HSPs)
chr2 (203-325)||(11816550-11816675)
chr2 (203-328)||(10639606-10639733)
chr2 (203-328)||(11459716-11459843)
chr2 (203-328)||(33083554-33083681)
chr2 (203-328)||(23839860-23839987)
chr2 (203-328)||(26605625-26605752)
chr2 (203-328)||(39535534-39535661)
chr2 (206-328)||(11708679-11708803)
chr2 (203-328)||(19537308-19537435)
chr2 (203-311)||(37197610-37197720)
chr2 (203-328)||(19048755-19048882)
chr2 (203-282)||(33001751-33001830)
chr2 (203-328)||(34460370-34460497)
chr2 (203-328)||(45125165-45125292)
chr2 (203-328)||(27137918-27138044)
chr2 (203-328)||(39831444-39831570)
chr2 (206-326)||(16654366-16654488)
chr2 (203-283)||(4851367-4851448)
chr2 (203-328)||(7275886-7276014)
chr2 (203-329)||(34239820-34239948)
chr2 (203-273)||(29659218-29659288)
chr2 (203-256)||(42578243-42578296)
chr2 (203-328)||(19816221-19816348)
chr2 (205-326)||(20497592-20497715)
chr2 (206-283)||(4800923-4801001)
chr2 (203-260)||(44181887-44181944)
chr2 (203-328)||(34234531-34234656)
chr2 (234-328)||(45201903-45201999)
[»] scaffold1348 (1 HSPs)
scaffold1348 (203-328)||(862-989)
[»] chr8 (33 HSPs)
chr8 (203-328)||(70523-70650)
chr8 (203-328)||(6602518-6602645)
chr8 (203-328)||(6677971-6678098)
chr8 (203-328)||(32333115-32333242)
chr8 (203-328)||(45264640-45264766)
chr8 (203-328)||(1078648-1078775)
chr8 (203-328)||(28817257-28817384)
chr8 (203-328)||(31969720-31969847)
chr8 (203-328)||(35779497-35779624)
chr8 (203-328)||(42192639-42192766)
chr8 (203-328)||(10963242-10963367)
chr8 (203-328)||(1340-1467)
chr8 (203-328)||(4530982-4531109)
chr8 (203-328)||(7792662-7792789)
chr8 (204-328)||(40911222-40911347)
chr8 (203-311)||(42885192-42885302)
chr8 (206-328)||(7813323-7813447)
chr8 (203-328)||(3822397-3822524)
chr8 (213-283)||(5385385-5385456)
chr8 (203-325)||(39303313-39303438)
chr8 (203-328)||(12534720-12534845)
chr8 (204-324)||(41849233-41849354)
chr8 (206-259)||(31532128-31532181)
chr8 (204-290)||(18752381-18752468)
chr8 (203-328)||(39435283-39435410)
chr8 (203-272)||(13891149-13891218)
chr8 (203-291)||(2907054-2907142)
chr8 (204-290)||(7403696-7403782)
chr8 (203-253)||(42364702-42364752)
chr8 (233-328)||(18386709-18386806)
chr8 (203-260)||(29425422-29425479)
chr8 (203-268)||(31695269-31695334)
chr8 (203-271)||(9775042-9775110)
[»] chr6 (17 HSPs)
chr6 (203-328)||(33621495-33621622)
chr6 (203-328)||(33704217-33704344)
chr6 (203-328)||(21000693-21000820)
chr6 (203-328)||(28322933-28323060)
chr6 (203-304)||(4464152-4464255)
chr6 (203-328)||(21037292-21037418)
chr6 (203-272)||(361070-361139)
chr6 (203-296)||(19145505-19145598)
chr6 (203-268)||(29009650-29009715)
chr6 (203-260)||(35218640-35218697)
chr6 (203-328)||(2959150-2959277)
chr6 (233-290)||(11572048-11572106)
chr6 (213-254)||(10999418-10999459)
chr6 (203-296)||(16518457-16518549)
chr6 (203-257)||(28592128-28592182)
chr6 (203-268)||(32289408-32289473)
chr6 (203-282)||(24619079-24619159)
[»] chr5 (19 HSPs)
chr5 (203-328)||(13203958-13204085)
chr5 (213-328)||(27721432-27721549)
chr5 (203-328)||(35317697-35317824)
chr5 (203-328)||(21018224-21018351)
chr5 (203-328)||(29265876-29266003)
chr5 (203-296)||(31909385-31909479)
chr5 (203-330)||(4824939-4825068)
chr5 (206-328)||(1191543-1191667)
chr5 (203-328)||(2970985-2971112)
chr5 (203-328)||(12257357-12257484)
chr5 (227-328)||(9576985-9577088)
chr5 (206-326)||(6020995-6021117)
chr5 (203-325)||(8734000-8734125)
chr5 (203-268)||(35545996-35546061)
chr5 (203-260)||(32143414-32143471)
chr5 (203-328)||(11124653-11124780)
chr5 (206-328)||(40177625-40177749)
chr5 (203-328)||(2786272-2786398)
chr5 (206-272)||(17984745-17984811)
[»] chr4 (39 HSPs)
chr4 (203-328)||(1173952-1174079)
chr4 (203-328)||(34739281-34739408)
chr4 (203-328)||(53457825-53457952)
chr4 (203-334)||(55400223-55400356)
chr4 (203-328)||(19849503-19849630)
chr4 (203-328)||(26424858-26424984)
chr4 (203-328)||(28798388-28798515)
chr4 (203-328)||(43139906-43140033)
chr4 (204-333)||(55214648-55214779)
chr4 (203-328)||(18257330-18257457)
chr4 (203-328)||(45874056-45874183)
chr4 (213-308)||(39807865-39807962)
chr4 (203-328)||(54768432-54768559)
chr4 (203-290)||(12735471-12735559)
chr4 (203-328)||(238458-238585)
chr4 (203-328)||(12867842-12867969)
chr4 (203-271)||(2075565-2075633)
chr4 (203-321)||(23417483-23417603)
chr4 (203-270)||(1966611-1966678)
chr4 (207-328)||(23710337-23710460)
chr4 (203-328)||(11277983-11278106)
chr4 (203-327)||(19225261-19225387)
chr4 (203-296)||(22608019-22608113)
chr4 (203-296)||(29581044-29581137)
chr4 (213-328)||(37134049-37134166)
chr4 (203-328)||(19673929-19674056)
chr4 (213-260)||(23532118-23532165)
chr4 (244-328)||(32441125-32441211)
chr4 (203-273)||(50033440-50033510)
chr4 (203-256)||(31015057-31015110)
chr4 (203-290)||(51287641-51287730)
chr4 (203-256)||(52171990-52172043)
chr4 (203-271)||(33770628-33770696)
chr4 (227-328)||(12767088-12767191)
chr4 (216-296)||(32778159-32778238)
chr4 (203-256)||(16555382-16555435)
chr4 (207-283)||(19814152-19814229)
chr4 (206-328)||(2864751-2864875)
chr4 (203-271)||(37620677-37620745)
[»] chr3 (29 HSPs)
chr3 (203-328)||(7824454-7824581)
chr3 (203-328)||(29689482-29689609)
chr3 (203-328)||(54158267-54158394)
chr3 (206-311)||(9349679-9349786)
chr3 (203-328)||(42392805-42392932)
chr3 (203-328)||(43247650-43247777)
chr3 (203-328)||(51665925-51666052)
chr3 (203-328)||(54151681-54151808)
chr3 (213-328)||(55018044-55018161)
chr3 (203-328)||(4601426-4601553)
chr3 (203-296)||(475281-475374)
chr3 (203-311)||(36228994-36229104)
chr3 (203-311)||(3112995-3113105)
chr3 (204-296)||(38257304-38257397)
chr3 (204-328)||(40756728-40756855)
chr3 (203-328)||(43775224-43775351)
chr3 (203-328)||(50729525-50729652)
chr3 (203-328)||(50783197-50783324)
chr3 (228-328)||(35461504-35461606)
chr3 (203-328)||(28844505-28844633)
chr3 (203-328)||(32001424-32001551)
chr3 (203-328)||(33334609-33334736)
chr3 (203-328)||(52500839-52500966)
chr3 (203-328)||(28458664-28458790)
chr3 (206-273)||(7958627-7958694)
chr3 (203-328)||(47635005-47635132)
chr3 (203-253)||(27230744-27230794)
chr3 (213-258)||(448885-448930)
chr3 (205-328)||(1778852-1778977)
[»] scaffold0119 (2 HSPs)
scaffold0119 (203-328)||(13951-14078)
scaffold0119 (203-328)||(19631-19758)
[»] scaffold0044 (1 HSPs)
scaffold0044 (203-328)||(9973-10100)
[»] scaffold0038 (1 HSPs)
scaffold0038 (203-328)||(114253-114380)
[»] scaffold0067 (1 HSPs)
scaffold0067 (203-325)||(34822-34947)
[»] scaffold0053 (1 HSPs)
scaffold0053 (203-283)||(22210-22291)
[»] scaffold0352 (1 HSPs)
scaffold0352 (203-272)||(8943-9012)


Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 20 - 409
Target Start/End: Complemental strand, 9386057 - 9385660
Alignment:
Q  20 tgtgatttgtgaagatagatgtggaaaggagacaagttgtgaggttgttgatgaagatagtggagaagttcaatgtgataagcgattctgtcattatgta 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9386057 tgtgatttgtgaagatagatgtggaaaggagacaagttgtgaggttgttgatgaagatagtggagaagttcaatgtgataagcgattctgtcattatgta 9385958  T
Q  120 taccaaacaaccgaaaagtgtggtacgtataattgcctcagtttacagatgtgatgagtannnnnnnnnnnnnnnnnnnnnnngtcttagataaagtggt 219  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||                       |||||| ||||||||||    
T  9385957 taccaaacaaccgaaaaatgtggtacgtataattgcctcagtttacagatgtgatgagtatttgtttattttttattttttttgtcttatataaagtggt 9385858  T
Q  220 aa-------ttcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccggtcacgacgtctgaccttgtaattcggcatttaccagtta 312  Q
    ||       |||||| |||||||||| ||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||| |||||||    
T  9385857 aattggtaattcactaaaattaaaccgacatacaactgtgaggtcccgcgtttgaacccggtcacgacgtccgaccttgtaattcggcatttgccagtta 9385758  T
Q  313 agttaggacttctagattaatattttgttgatatatac-nnnnnnnnnngcggcgcatcctctcggatgaccctccgggatgatcctctgtacctatg 409  Q
    ||||||||||| ||||||||||||||||||||||||||           |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9385757 agttaggacttttagattaatattttgttgatatatactttttttttttgcggcgcatcctttcggatgaccctccgggatgatcctctgtacctatg 9385660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 28456002 - 28455875
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| |||||||| ||||| |||| ||||||||||||||||| |||||||||| |||||| ||||| | ||||| || ||||||    
T  28456002 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcacaacgtccggccttgcaatttcggc 28455903  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| || |||||||||||||    
T  28455902 atttgccagttgagctaggacttctaga 28455875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 32007202 - 32007075
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| |||||||| ||||| |||| ||||||||||||||||| |||||||||| ||||| |||||| | ||||| || ||||||    
T  32007202 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggc 32007103  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| || |||||||||||||    
T  32007102 atttgccagttgagctaggacttctaga 32007075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 203 - 328
Target Start/End: Original strand, 45813011 - 45813138
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| |||||||| ||||| |||| ||||||||||||||||| |||||||||| |||||||| ||| ||||||| || ||||||    
T  45813011 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcacgatgtccgaccttgcaatttcggc 45813110  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    ||||  ||||| || |||||||||||||    
T  45813111 atttgtcagttgagctaggacttctaga 45813138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 27 - 149
Target Start/End: Original strand, 9232583 - 9232705
Alignment:
Q  27 tgtgaagatagatgtggaaaggagacaagttgtgaggttgttgatgaagatagtggagaagttcaatgtgataagcgattctgtcattatgtataccaaa 126  Q
    ||||||||||||||||||||||  ||||||||| |||||||||||||||| |  ||||||||||||||| ||||||  || ||||||||||  |||||||    
T  9232583 tgtgaagatagatgtggaaagggaacaagttgtaaggttgttgatgaagaaaaaggagaagttcaatgtaataagcagttatgtcattatgcttaccaaa 9232682  T
Q  127 caaccgaaaagtgtggtacgtat 149  Q
    |||| || ||||| |||| ||||    
T  9232683 caactgataagtgcggtatgtat 9232705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 203 - 326
Target Start/End: Complemental strand, 778702 - 778578
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccg-gtcacgacgtctgaccttgtaattcggca 301  Q
    ||||||||| || |||||||||||||||||||||| |||| |||||||| ||||||   ||||||||| | ||||||||||  |||||||||||||||||    
T  778702 gtcttagatgaattggtaattcactgaaattaaactcacacacaactgtcaggtcctaggttcgaacctgagtcacgacgttcgaccttgtaattcggca 778603  T
Q  302 tttaccagttaagttaggacttcta 326  Q
    ||| |||||| || ||| |||||||    
T  778602 ttttccagttgagctagaacttcta 778578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 203 - 328
Target Start/End: Original strand, 5055788 - 5055915
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| |||||||| ||||| |||| ||||||||||||||||| |||||||||| ||||| |||||| | ||||| || ||||||    
T  5055788 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggc 5055887  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||| | || |||||||||||||    
T  5055888 atttgccagctgagctaggacttctaga 5055915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 203 - 328
Target Start/End: Original strand, 29994383 - 29994510
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccgg-tcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||  |||||||||||||| |||| |||| ||||||||| || |||||||||||| ||| |||||||| ||||| || ||||||    
T  29994383 gtcttagatgaagtggtaaaccactgaaattaaactcacacacaattgtgaggtctcgggttcgaacccggatcatgacgtctggccttgcaatttcggc 29994482  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| || |||||||||||||    
T  29994483 atttgccagttgagctaggacttctaga 29994510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 41808330 - 41808203
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| |||||||| ||||| |||| ||||||||||||| ||| |||||||||| ||||| |||||| | ||||| || ||||||    
T  41808330 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggttccgggttcgaacccgggtcatgacgtccggccttgcaatttcggc 41808231  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| || |||||||||||||    
T  41808230 atttgccagttgagctaggacttctaga 41808203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 20876 - 20749
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaa-cccggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| |||| ||| ||||| |||| ||||||||||||||||| ||||||| || ||||||| ||||   ||||| || ||||||    
T  20876 gtcttagatgaagtggtaatccactaaaaataaactcacacacaactgtgaggtcccgggttcgaatccgggtcacggcgtcctgccttgcaatttcggc 20777  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| ||||||||||||||||    
T  20776 atttgccagttgagttaggacttctaga 20749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 48660150 - 48660023
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| |||||||| ||||| |||| ||||||||||| ||||| |||||||||| |||||  ||||| | ||||| || ||||||    
T  48660150 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgagatcccgggttcgaacccgggtcataacgtccggccttgcaatttcggc 48660051  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| || |||||||||||||    
T  48660050 atttgccagttgagctaggacttctaga 48660023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 203 - 296
Target Start/End: Complemental strand, 7059595 - 7059501
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaatt 296  Q
    |||||||||||||||||||| |||| ||||||||| |||| |||||||||||||| |   ||||||||| |||||||||||||||||||| ||||    
T  7059595 gtcttagataaagtggtaatccacttaaattaaactcacacacaactgtgaggtctcagattcgaacccgggtcacgacgtctgaccttgcaatt 7059501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 5943809 - 5943682
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| ||||| |||| || ||||||||||| |||| ||||||||||||||| | |||||||||| |||||||||||| | ||||| || ||||||    
T  5943809 gtcttagatgaagtgataatccattgaaattaaactcacaaacaactgtgaggtcctgagttcgaacccgggtcacgacgtccggccttgcaatttcggc 5943710  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    ||||  ||||| || ||||| |||||||    
T  5943709 atttgtcagttgagctaggaattctaga 5943682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 203 - 328
Target Start/End: Original strand, 41761411 - 41761538
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||| ||| |||||||||| |||||||| ||||| |||| ||||||||||||||| | |||||||||| |||||| ||||| | ||||| || ||||||    
T  41761411 gtcttggatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcctgggttcgaacccgggtcacaacgtccggccttgcaatttcggc 41761510  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| |  |||||||||||||    
T  41761511 atttgccagttgaactaggacttctaga 41761538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 204 - 328
Target Start/End: Complemental strand, 35945924 - 35945798
Alignment:
Q  204 tcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggca 301  Q
    |||||||| |||||||||| |||||||| ||||  |||| ||||||||||||| ||| |||||||||| |||||| |||||   ||||  || |||||||    
T  35945924 tcttagatgaagtggtaatccactgaaaataaattcacacacaactgtgaggttccgggttcgaacccaggtcacaacgtccagccttacaatttcggca 35945825  T
Q  302 tttaccagttaagttaggacttctaga 328  Q
    |||||||||| || |||||||||||||    
T  35945824 tttaccagttgagctaggacttctaga 35945798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 203 - 273
Target Start/End: Original strand, 41039303 - 41039373
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccgg 273  Q
    ||||||||| |||||||||| |||||||| ||||| |||| ||||||||||||||||| ||||||||||||    
T  41039303 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgg 41039373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 203 - 322
Target Start/End: Complemental strand, 39276478 - 39276357
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    |||||| || |||||||||| |||||||| ||||| |||| | ||||||||||||||| |||||||||| |||||| ||||| | ||||| || ||||||    
T  39276478 gtcttaaatgaagtggtaatccactgaaaataaactcacacataactgtgaggtcccgggttcgaacccgggtcacaacgtccggccttgcaatttcggc 39276379  T
Q  301 atttaccagttaagttaggact 322  Q
    |||| |||||| || |||||||    
T  39276378 atttgccagttgagctaggact 39276357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 206 - 328
Target Start/End: Original strand, 2088908 - 2089032
Alignment:
Q  206 ttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccg-gtcacgacgtctgaccttgtaa-ttcggcatt 303  Q
    |||||| |||||||||| |||||||||| ||| ||||||||| |||||||| | | ||||||||||| ||||||| ||||||||||  || ||||  |||    
T  2088908 ttagatgaagtggtaatccactgaaattgaactcacatacaattgtgaggttctgagttcgaacccgagtcacgatgtctgaccttacaatttcgatatt 2089007  T
Q  304 taccagttaagttaggacttctaga 328  Q
    | |||||| || |||||||||||||    
T  2089008 tgccagttgagctaggacttctaga 2089032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 49783835 - 49783708
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccg-gtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||  |||||||||||||  |||||||||||||||||| ||| |||||||||||  ||| |||||  ||||||| || |||| |    
T  49783835 gtcttagatgaagtggtaaaccactgaaattaaattcacatacaactgtgaggttccgggttcgaacccgaatcatgacgttcgaccttgcaatttcgac 49783736  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| ||| || ||||||||||| ||||    
T  49783735 atttgccaattgagttaggacttataga 49783708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 207 - 328
Target Start/End: Original strand, 50106200 - 50106323
Alignment:
Q  207 tagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccgg-tcacgacgtctgaccttgtaat-tcggcattt 304  Q
    ||||| || ||| ||| |||||||| ||||| |||| | ||||||||||||||| |||||||||||| |||| ||||  | ||||| ||| ||  |||||    
T  50106200 tagatgaaatggcaatccactgaaaataaactcacacataactgtgaggtcccgggttcgaacccgggtcacaacgttcggccttgcaatctcaacattt 50106299  T
Q  305 accagttaagttaggacttctaga 328  Q
    ||||||||| ||||||||||||||    
T  50106300 accagttaaattaggacttctaga 50106323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 203 - 273
Target Start/End: Complemental strand, 4066089 - 4066019
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccgg 273  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||| ||| ||||| |   |||||||||||    
T  4066089 gtcttagatgaagtggtaattcactgaaattaaactcacatacaattgtaaggtctcagattcgaacccgg 4066019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 206 - 256
Target Start/End: Original strand, 13183179 - 13183229
Alignment:
Q  206 ttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggt 256  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||| ||||    
T  13183179 ttagatgaagtggtaattcactgaaattaaactcacatacaactgtaaggt 13183229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 238 - 326
Target Start/End: Complemental strand, 29587345 - 29587255
Alignment:
Q  238 ccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggcatttaccagttaagttaggacttcta 326  Q
    ||||| |||| |||||||||||| |||||||||| |||||||||||| | ||||| || |||||||||| |||||| || |||||||||||    
T  29587345 ccacacacaattgtgaggtcccgggttcgaacccaggtcacgacgtccggccttgcaatttcggcatttgccagttgagctaggacttcta 29587255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 256
Target Start/End: Complemental strand, 13109898 - 13109845
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggt 256  Q
    ||||||||| |||||||||| |||||||||||||| |||| |||||||||||||    
T  13109898 gtcttagatgaagtggtaatccactgaaattaaactcacacacaactgtgaggt 13109845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 283
Target Start/End: Complemental strand, 26032929 - 26032848
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtc 283  Q
    ||||||||| ||| |||||| |||||||||||||| |||| | ||||||||||| ||  |||||||||| ||||||||||||    
T  26032929 gtcttagatgaagcggtaatccactgaaattaaactcacacaaaactgtgaggttccaggttcgaacccgggtcacgacgtc 26032848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 192543 - 192416
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccgg-tcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| | |||||| ||||| |||| ||||||||||||||| | |||||||| ||| |||| ||||| | ||||| || ||  ||    
T  192543 gtcttagatgaagtggtaatccgctgaaaataaactcacacacaactgtgaggtcctgggttcgaacacggatcacaacgtccggccttgcaattttagc 192444  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    ||||  ||||| || |||||||||||||    
T  192443 atttgtcagttgagctaggacttctaga 192416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 203 - 273
Target Start/End: Original strand, 35110099 - 35110169
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccgg 273  Q
    ||||||||| |||||||||| | || ||||||||| |||| |||||||| |||||| | ||||||||||||    
T  35110099 gtcttagatgaagtggtaatcctctcaaattaaactcacacacaactgtaaggtcctgggttcgaacccgg 35110169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 203 - 256
Target Start/End: Complemental strand, 13097432 - 13097379
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggt 256  Q
    ||||||||| |||||||||| || | ||||||||| ||||||||||||||||||    
T  13097432 gtcttagatgaagtggtaatccaataaaattaaactcacatacaactgtgaggt 13097379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 328
Target Start/End: Original strand, 46447373 - 46447504
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaa----ttaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-tt 296  Q
    ||||||||| | |||||||| ||||||||    |||||| |||| | ||||||||||||||| |||||||||| ||| ||||||||   ||||| || ||    
T  46447373 gtcttagatgatgtggtaatccactgaaaataattaaactcacacataactgtgaggtcccgggttcgaacccgggttacgacgtcgagccttgcaattt 46447472  T
Q  297 cggcatttaccagttaagttaggacttctaga 328  Q
    |||||||| |||||| |  ||| |||||||||    
T  46447473 cggcatttgccagttgaactagaacttctaga 46447504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 271
Target Start/End: Complemental strand, 39228554 - 39228492
Alignment:
Q  207 tagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc 271  Q
    ||||||||||||||||| | | ||||||||| ||||  ||||||||| || ||||||||||||||    
T  39228554 tagataaagtggtaatttattaaaattaaactcaca--caactgtgatgttccgtgttcgaaccc 39228492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 328
Target Start/End: Complemental strand, 7275806 - 7275682
Alignment:
Q  206 ttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccg-gtcacgacgtctgaccttgtaa-ttcggcatt 303  Q
    |||||| |||||||||  |||||||||||||| || | |||||||||| || ||| ||||||| ||| ||||  ||||| ||||||  || |||| ||||    
T  7275806 ttagatgaagtggtaaaccactgaaattaaactcatacacaactgtgaagttccgggttcgaatccgagtcataacgtccgaccttacaatttcgacatt 7275707  T
Q  304 taccagttaagttaggacttctaga 328  Q
    | |||||| ||||| || |||||||    
T  7275706 tgccagttgagttaagatttctaga 7275682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 256
Target Start/End: Original strand, 26264537 - 26264589
Alignment:
Q  204 tcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggt 256  Q
    |||||||| ||||| |||| || ||||||||||| |||| |||||||||||||    
T  26264537 tcttagatgaagtgataatacattgaaattaaactcacacacaactgtgaggt 26264589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 47557909 - 47557782
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||  |||||||||||||| |||||||||||||||||| ||| |||||||||| ||||| |||||  |||||||||| ||||||    
T  47557909 gtcttagatgaagtggtaaaccactgaaattaaactcacatacaactgtgaggttccgggttcgaacccgggtcatgacgtgcgaccttgtaatttcggc 47557810  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    ||||||||||| ||||||||||||||||    
T  47557809 atttaccagttgagttaggacttctaga 47557782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 203 - 328
Target Start/End: Original strand, 25112247 - 25112374
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| |||||||| |||||||||| ||||||||||||||||| |||||||||| ||||| |||||| ||||||| || |||||     
T  25112247 gtcttagatgaagtggtaatccactgaaaataaacccacacacaactgtgaggtcccgggttcgaacccaggtcatgacgtccgaccttgcaatttcggt 25112346  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| || |||||||||||||    
T  25112347 atttgccagttgagctaggacttctaga 25112374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 203 - 328
Target Start/End: Original strand, 25546275 - 25546402
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||  |||||||||||||| |||| |||||||||||||||||  ||||||||| ||||| |||||| | ||||| || ||||||    
T  25546275 gtcttagatgaagtggtaaaccactgaaattaaactcacacacaactgtgaggtcccggattcgaacccgggtcatgacgtccggccttgcaatttcggc 25546374  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    ||||||||||| || |||||||||||||    
T  25546375 atttaccagttgagctaggacttctaga 25546402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 2146764 - 2146637
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| |||||||| |||||||||| ||||||||||||||  | |||||||||| |||||| ||||| | ||||| || ||||||    
T  2146764 gtcttagatgaagtggtaatccactgaaaataaacccacacacaactgtgaggtcttgggttcgaacccgggtcacaacgtccggccttgcaatttcggc 2146665  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| || |||||||||||||    
T  2146664 attttccagttgagctaggacttctaga 2146637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 4106866 - 4106739
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| |||||||| ||||| |||| ||||||||||||||||| |||||||||| ||||| |||||| | ||||| || ||||||    
T  4106866 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggc 4106767  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| ||||||  | |||||||||||||    
T  4106766 atttgccagttgggctaggacttctaga 4106739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 23358313 - 23358186
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| |||||||| ||||| |||| ||||||||||||||||| |||||||||| ||| |||||||| | ||||| || |||||     
T  23358313 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggttacgacgtccggccttgcaatttcggt 23358214  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| || |||||||||||||    
T  23358213 atttgccagttgagctaggacttctaga 23358186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 203 - 328
Target Start/End: Original strand, 31770532 - 31770659
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| |||||||| ||||| |||| ||||||||||||||||| |||||||||| ||||| ||| || | ||||| || ||||||    
T  31770532 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcatgacatccggccttgcaatttcggc 31770631  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| || |||||||||||||    
T  31770632 atttgccagttgagctaggacttctaga 31770659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 40058366 - 40058239
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| |||||||| ||||| || | ||||||||||||||||| |||||||||| |||||| ||||| | ||||| || || |||    
T  40058366 gtcttagatgaagtggtaatccactgaaaataaactcatacacaactgtgaggtcccgggttcgaacccgggtcacaacgtccggccttgcaattttggc 40058267  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| ||||||||||||||||    
T  40058266 atttgccagttgagttaggacttctaga 40058239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 204 - 325
Target Start/End: Original strand, 43753754 - 43753878
Alignment:
Q  204 tcttagataaagtggtaattcactgaaattaaacc-cacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    |||||||| |||||||||| ||||||||||||| | |||||||||||||||||| ||| |||||||||| |||||||||||| | ||||| || ||||||    
T  43753754 tcttagatgaagtggtaatccactgaaattaaaactcacatacaactgtgaggttccgggttcgaacccaggtcacgacgtccggccttgcaatttcggc 43753853  T
Q  301 atttaccagttaagttaggacttct 325  Q
    |||| |||||| |  ||||||||||    
T  43753854 atttgccagttgaactaggacttct 43753878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 206 - 328
Target Start/End: Complemental strand, 44084065 - 44083941
Alignment:
Q  206 ttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggcatt 303  Q
    |||||| |||||||||| |||||||| ||||| |||| ||||||||||||||||| |||||||||| |||||| ||||| | ||||| || || ||||||    
T  44084065 ttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcacaacgtccggccttgcaattttggcatt 44083966  T
Q  304 taccagttaagttaggacttctaga 328  Q
    | |||||| || |||||||||||||    
T  44083965 tgccagttgagctaggacttctaga 44083941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 203 - 328
Target Start/End: Original strand, 27915580 - 27915708
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc--ggtcacgacgtctgaccttgtaatt-cgg 299  Q
    ||||||||| ||||||||||||| ||||||||||| || | ||||||||||| ||    |||||||| |  |||||||||||| ||||||| |||| | |    
T  27915580 gtcttagatgaagtggtaattcattgaaattaaactcatacacaactgtgagatcttaggttcgaactcaaggtcacgacgtccgaccttgcaatttcag 27915679  T
Q  300 catttaccagttaagttaggacttctaga 328  Q
    |||||||||||| ||||||||||||||||    
T  27915680 catttaccagttgagttaggacttctaga 27915708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 203 - 316
Target Start/End: Complemental strand, 4107437 - 4107322
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| |||||||| ||||| |||| ||||||||||||||||| |||||||||| ||||  |||||| | ||||| || ||||||    
T  4107437 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcgtgacgtccggccttgcaatttcggc 4107338  T
Q  301 atttaccagttaagtt 316  Q
    |||| |||||| ||||    
T  4107337 atttgccagttgagtt 4107322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 203 - 296
Target Start/End: Complemental strand, 48146881 - 48146787
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaatt 296  Q
    ||||||||| |||||||||| || ||||| | ||| |||| ||||||||||||||||| |||||||||| ||||||||| |||||||||| ||||    
T  48146881 gtcttagatgaagtggtaatccaatgaaaattaactcacacacaactgtgaggtcccgggttcgaacccgggtcacgacatctgaccttgcaatt 48146787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 213 - 323
Target Start/End: Original strand, 27229487 - 27229600
Alignment:
Q  213 aagtggtaattcactgaaattaaacc-cacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggcatttaccag 309  Q
    |||||||||| ||||||||||||| | |||| ||||||||||||||||| |||||||||| |||||||||||| | ||||| || |||| |||||  |||    
T  27229487 aagtggtaatccactgaaattaaaactcacacacaactgtgaggtcccgggttcgaacccaggtcacgacgtccggccttgcaatttcgacatttgtcag 27229586  T
Q  310 ttaagttaggactt 323  Q
    || |||||||||||    
T  27229587 ttgagttaggactt 27229600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 203 - 330
Target Start/End: Original strand, 47250251 - 47250380
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| |||||||| ||||| |||| ||||||  ||| ||||  |||||||||| ||||| |||||| | ||||| || ||||||    
T  47250251 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactaagagatcccaggttcgaacccgggtcatgacgtccggccttgcaatttcggc 47250350  T
Q  301 atttaccagttaagttaggacttctagatt 330  Q
    |||| |||||| || |||||||||||||||    
T  47250351 atttgccagttgagctaggacttctagatt 47250380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 203 - 328
Target Start/End: Original strand, 32606330 - 32606457
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacc-cggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| || |||||||||||||||||||||  |||||| |||||| ||||| || |||||||||  |||||||||||| | ||||| || |||||     
T  32606330 gtcttagatgaattggtaattcactgaaattaaattcacataaaactgtaaggtctcgggttcgaacctgggtcacgacgtccggccttgcaatttcggt 32606429  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    ||||  ||||| |||||| |||||||||    
T  32606430 atttgtcagttgagttagaacttctaga 32606457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 227 - 328
Target Start/End: Original strand, 47960979 - 47961082
Alignment:
Q  227 tgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccgg-tcacgacgtctgaccttgtaa-ttcggcatttaccagttaagttaggacttc 324  Q
    ||||||||||| |||| ||||||  ||||||||| |||||||||||| ||| ||||||||||||||||| || ||||||| | |||| ||||| ||||||    
T  47960979 tgaaattaaactcacacacaactacgaggtcccgggttcgaacccggttcatgacgtctgaccttgtaattttggcatttgcaagttgagttaagacttc 47961078  T
Q  325 taga 328  Q
    ||||    
T  47961079 taga 47961082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 203 - 273
Target Start/End: Original strand, 38781208 - 38781278
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccgg 273  Q
    ||||||||| |||||||||| |||||||| ||||| |||| ||||||||||||||||| ||||||| ||||    
T  38781208 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaatccgg 38781278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 203 - 273
Target Start/End: Original strand, 47570718 - 47570788
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccgg 273  Q
    ||||||||| |||||||||| |||||||| ||||| |||| ||||||||||| ||||| ||||||||||||    
T  47570718 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgagatcccgggttcgaacccgg 47570788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 203 - 326
Target Start/End: Complemental strand, 8439206 - 8439081
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaa-cccggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| |||||||| ||||  |||| ||||||||||||||| | ||||||| || |||||| ||||| ||||||| || || |||    
T  8439206 gtcttagatgaagtggtaatccactgaaaataaattcacacacaactgtgaggtcctgggttcgaatccgggtcacaacgtccgaccttgcaattttggc 8439107  T
Q  301 atttaccagttaagttaggacttcta 326  Q
    |||| |||||| |  |||||||||||    
T  8439106 atttgccagttgaactaggacttcta 8439081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 203 - 268
Target Start/End: Complemental strand, 11355951 - 11355886
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaa 268  Q
    ||||||||| |||||||||| |||||||||||||| |||| ||||||||||| ||||| |||||||    
T  11355951 gtcttagatgaagtggtaatccactgaaattaaactcacacacaactgtgagatcccgggttcgaa 11355886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 203 - 322
Target Start/End: Original strand, 29484755 - 29484876
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    |||||| || ||||| |||| |||||||||||||| ||||||||| |||||||||||| |||| ||||| | ||| |||||| | ||||| || ||||||    
T  29484755 gtcttatatgaagtgataatccactgaaattaaactcacatacaattgtgaggtcccgggttcaaacccagatcatgacgtccggccttgcaatttcggc 29484854  T
Q  301 atttaccagttaagttaggact 322  Q
    |||| |||||| || |||||||    
T  29484855 atttgccagttgagctaggact 29484876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 203 - 328
Target Start/End: Original strand, 7162790 - 7162915
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| |||||||| ||||| ||||  ||| |||||||||||| |||||||||| |||||| ||||| | ||||  || ||||||    
T  7162790 gtcttagatgaagtggtaatccactgaaaataaactcaca--caattgtgaggtcccgagttcgaacccgggtcacaacgtccggccttacaatttcggc 7162887  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| || |||||||| ||||    
T  7162888 atttgccagttgagctaggacttttaga 7162915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 25872891 - 25872764
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccgg-tcacgacgtctgaccttgtaat-tcggc 300  Q
    ||||||||| ||||||||| |||| |||| ||||| || | |||| ||| |||||    ||||||||| || |||||||||| ||||||||||| |||||    
T  25872891 gtcttagatgaagtggtaaatcacagaaaataaactcatacacaattgtaaggtcataggttcgaacctggatcacgacgtccgaccttgtaatatcggc 25872792  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| ||| || ||||||||||||||||    
T  25872791 atttgccaattgagttaggacttctaga 25872764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 207 - 328
Target Start/End: Complemental strand, 38033853 - 38033730
Alignment:
Q  207 tagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccgg-tcacgacgtctgaccttgtaa-ttcggcattt 304  Q
    ||||| |||||||| | |||||||| ||||| |||| |||||||||||||||||  || |||||||| |||| | ||| ||||||  || ||||||||||    
T  38033853 tagatgaagtggtactccactgaaaataaactcacacacaactgtgaggtcccggatttgaacccggatcacaatgtccgaccttacaatttcggcattt 38033754  T
Q  305 accagttaagttaggacttctaga 328  Q
     |||||| |||||| |||||||||    
T  38033753 gccagttgagttagaacttctaga 38033730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 203 - 273
Target Start/End: Original strand, 42081619 - 42081686
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccgg 273  Q
    ||||||||||||||||||||||||||||| ||||| |||  ||||||||||||||| | ||||||||||||    
T  42081619 gtcttagataaagtggtaattcactgaaaataaactcac--acaactgtgaggtccag-gttcgaacccgg 42081686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 216 - 328
Target Start/End: Original strand, 25049971 - 25050085
Alignment:
Q  216 tggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaa-cccggtcacgacgtctgaccttgtaa-ttcggcatttaccagttaa 313  Q
    ||||||| |||| ||||||||| |||||||||||||||| ||  | |||| || || |||||||||||||||||||  || |||||||||| | |||| |    
T  25049971 tggtaatccacttaaattaaactcacatacaactgtgagatcatgagttcaaatccaggtcacgacgtctgacctttcaatttcggcattttctagttga 25050070  T
Q  314 gttaggacttctaga 328  Q
    ||||| |||||||||    
T  25050071 gttagaacttctaga 25050085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 283
Target Start/End: Original strand, 48444152 - 48444233
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtc 283  Q
    ||||||||| |||||||||||||||||||||||||  ||| |||||||||| || | | |||||||||| | ||||||||||    
T  48444152 gtcttagatgaagtggtaattcactgaaattaaacttacacacaactgtgaagtacagggttcgaacccagatcacgacgtc 48444233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 212 - 260
Target Start/End: Complemental strand, 34763561 - 34763513
Alignment:
Q  212 aaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccg 260  Q
    ||||||||||| |||||||||||||| |||| |||||||||||||||||    
T  34763561 aaagtggtaatccactgaaattaaactcacacacaactgtgaggtcccg 34763513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 328
Target Start/End: Original strand, 5772819 - 5772946
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    |||||| || |||||||||  |||||||||||||| |||| |||||||||||||  || |||||||||| ||||||   ||| ||||||| || ||||||    
T  5772819 gtcttaaatgaagtggtaaaccactgaaattaaactcacacacaactgtgaggtttcgagttcgaacccgggtcacattgtccgaccttgcaatttcggc 5772918  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| || ||| || || ||||||||||    
T  5772919 atttgcccgttgagctaagacttctaga 5772946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 218 - 326
Target Start/End: Complemental strand, 13887282 - 13887174
Alignment:
Q  218 gtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacc-cggtcacgacgtctgaccttgtaa-ttcggcatttaccagttaagt 315  Q
    ||||| |||||||||||||| ||  |||||||||||||| ||| |||||||||  |||||||||||| |  |||| || |||||||||| |||||| |||    
T  13887282 gtaatccactgaaattaaactca--tacaactgtgaggttccgggttcgaacctgggtcacgacgtccggtcttgcaagttcggcatttgccagttgagt 13887185  T
Q  316 taggacttcta 326  Q
    || ||||||||    
T  13887184 taagacttcta 13887174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 313
Target Start/End: Complemental strand, 41183943 - 41183831
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| ||||| |||| |||||||| ||||| |||| | |||||||||||   | |||||||||| ||||| |||||| | ||||| || ||||||    
T  41183943 gtcttagatgaagtgataatccactgaaaataaactcacacataactgtgaggtattgggttcgaacccaggtcaagacgtccggccttgcaatttcggc 41183844  T
Q  301 atttaccagttaa 313  Q
    |||| ||||||||    
T  41183843 atttgccagttaa 41183831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 273
Target Start/End: Complemental strand, 5587408 - 5587338
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccgg 273  Q
    ||||||||| |||||||||| |||| ||||||||| ||||   || |||||||||| | ||||||||||||    
T  5587408 gtcttagatgaagtggtaatccactaaaattaaactcacacgtaaatgtgaggtcctgggttcgaacccgg 5587338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 273
Target Start/End: Complemental strand, 5592369 - 5592299
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccgg 273  Q
    ||||||||| |||||||||| |||| ||||||||| ||||   || |||||||||| | ||||||||||||    
T  5592369 gtcttagatgaagtggtaatccactaaaattaaactcacacgtaaatgtgaggtcctgggttcgaacccgg 5592299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 56609 - 56482
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| |||||||| ||||| |||| ||||||||||||||||| |||||||||| |||||| ||||| ||||||| || ||||||    
T  56609 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcacaacgtccgaccttgcaatttcggc 56510  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| || |||||||||||||    
T  56509 atttgccagttgagctaggacttctaga 56482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 203 - 325
Target Start/End: Original strand, 11816550 - 11816675
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaatt-aaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcgg 299  Q
    ||||||||| |||||||||| |||||||||| |||| |||||||||||||||||| ||| |||||||||| |||||||||||| ||||||| || |||||    
T  11816550 gtcttagatgaagtggtaatccactgaaattaaaactcacatacaactgtgaggttccgggttcgaacccaggtcacgacgtccgaccttgcaatttcgg 11816649  T
Q  300 catttaccagttaagttaggacttct 325  Q
    ||||| |||||| || ||||||||||    
T  11816650 catttgccagttgagctaggacttct 11816675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 203 - 328
Target Start/End: Original strand, 10639606 - 10639733
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| |||||||| ||||| |||| ||||||||||||||||| |||||||||| ||||| |||||| | ||||| || ||||||    
T  10639606 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggc 10639705  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| || |||||||||||||    
T  10639706 atttgccagttgagctaggacttctaga 10639733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 11459843 - 11459716
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| || ||||| ||||| |||| ||||||||||||||||| |||||||||| ||||| |||||| ||||||| || ||||||    
T  11459843 gtcttagatgaagtggtaatccattgaaaataaacacacacacaactgtgaggtcccgggttcgaacccgggtcatgacgtccgaccttgcaatttcggc 11459744  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| || |||||||||||||    
T  11459743 atttgccagttgagctaggacttctaga 11459716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 203 - 328
Target Start/End: Original strand, 33083554 - 33083681
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| |||||||| ||||| |||| ||||||||||||||||| |||||||||| ||||| |||||| | ||||| || ||||||    
T  33083554 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggc 33083653  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| || |||||||||||||    
T  33083654 atttgccagttgagctaggacttctaga 33083681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 23839987 - 23839860
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| |||||||| ||||| |||| ||||||||||||||||  |||||||||| |||||| ||||| | ||||| || || |||    
T  23839987 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccaggttcgaacccaggtcacaacgtccggccttgcaattttggc 23839888  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| ||||||||||||||||    
T  23839887 atttgccagttgagttaggacttctaga 23839860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 26605752 - 26605625
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| |||||||| ||||  |||| ||||||||||||||||| |||||||||| |||||| ||||| | ||||| || ||||||    
T  26605752 gtcttagatgaagtggtaatccactgaaaataaattcacacacaactgtgaggtcccgggttcgaacccgggtcacaacgtccggccttgcaatttcggc 26605653  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| || |||||||||||||    
T  26605652 atttgccagttgagctaggacttctaga 26605625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 203 - 328
Target Start/End: Original strand, 39535534 - 39535661
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| | || ||||||||| |||||| ||||||||||||||| |||||||||| |||||||||||| | ||||| || |||| |    
T  39535534 gtcttagatgaagtggtaatccgctcaaattaaactcacataaaactgtgaggtcccgggttcgaacccgggtcacgacgtccggccttgcaatttcgac 39535633  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| | |||| ||||||||||||||||    
T  39535634 atttgctagttgagttaggacttctaga 39535661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 206 - 328
Target Start/End: Complemental strand, 11708803 - 11708679
Alignment:
Q  206 ttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggcatt 303  Q
    |||||| |||||||||| |||||||| |||||||||| ||||||||||||||| | |||||||||| |||||| ||||| | ||||  || |||||||||    
T  11708803 ttagatgaagtggtaatccactgaaaataaacccacacacaactgtgaggtcctgggttcgaacccgggtcacaacgtccggccttacaatttcggcatt 11708704  T
Q  304 taccagttaagttaggacttctaga 328  Q
    | |||||| || |||||||||||||    
T  11708703 tgccagttgagctaggacttctaga 11708679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 19537435 - 19537308
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccgg-tcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| |||||||| ||||| |||| ||||||||||||| ||| |||||||||||| |||| ||||| | ||||| || ||||||    
T  19537435 gtcttagatgaagtggtaatccactgaaaataaacacacacacaactgtgaggttccgggttcgaacccggatcacaacgtccggccttgcaatttcggc 19537336  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| |  |||||||||||||    
T  19537335 atttgccagttgaactaggacttctaga 19537308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 203 - 311
Target Start/End: Original strand, 37197610 - 37197720
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| |||||||| ||||| |||| ||||||||||||||||| |||||||||| ||||||||||||   ||||| || ||||||    
T  37197610 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcacgacgtccagccttgcaatttcggc 37197709  T
Q  301 atttaccagtt 311  Q
    |||| ||||||    
T  37197710 atttgccagtt 37197720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 19048882 - 19048755
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccgg-tcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||  |||||||| ||||| |||| |||| |||||||||||| |||||||||||| ||| |||||| | ||||  || ||||||    
T  19048882 gtcttagatgaagtggtaaaccactgaaactaaactcacacacaattgtgaggtcccgggttcgaacccggatcatgacgtccggccttacaatttcggc 19048783  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| || |||||||||||||    
T  19048782 atttgccagttgagctaggacttctaga 19048755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 203 - 282
Target Start/End: Complemental strand, 33001830 - 33001751
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccggtcacgacgt 282  Q
    ||||||||| || ||||||| |||||||||||||| |||||| ||||||||||||| |||||||||||| ||||| ||||    
T  33001830 gtcttagatgaaatggtaatccactgaaattaaactcacatataactgtgaggtcctgtgttcgaacccagtcacaacgt 33001751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 34460497 - 34460370
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| |||||||| ||||| |||| ||||||||||||| | | |||||||||| |||||| ||||| | ||||| || ||||||    
T  34460497 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggttctgggttcgaacccgggtcacaacgtccggccttgcaatttcggc 34460398  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    ||||  ||||| || |||||||||||||    
T  34460397 atttgtcagttgagctaggacttctaga 34460370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 203 - 328
Target Start/End: Original strand, 45125165 - 45125292
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| |||||||| ||||| |||| ||||||||||||| ||| ||||||||||  ||||| ||||| | ||||  || ||||||    
T  45125165 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggttccgagttcgaacccaagtcacaacgtccggccttacaatttcggc 45125264  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| || |||||||||||||    
T  45125265 atttgccagttgagctaggacttctaga 45125292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 203 - 328
Target Start/End: Original strand, 27137918 - 27138044
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaattcggca 301  Q
    ||||||||| |||||||||| |||||||||||||| |||||| |||||| |||||||| |||||||||| |||||||| ||  | ||||  | ||| |||    
T  27137918 gtcttagatgaagtggtaatccactgaaattaaactcacataaaactgtaaggtcccgggttcgaacccaggtcacgatgttcggccttcaatttcagca 27138017  T
Q  302 tttaccagttaagttaggacttctaga 328  Q
    |||  ||||| || |||||||||||||    
T  27138018 tttgtcagttgagctaggacttctaga 27138044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 203 - 328
Target Start/End: Original strand, 39831444 - 39831570
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccgg-tcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||  |||||||||||||| |||| |||| |||||||||||| |||||||||||| ||| |||||| | ||||| || |||||     
T  39831444 gtcttagatgaagtggtaaaccactgaaattaaactcacacacaattgtgaggtcccg-gttcgaacccggatcatgacgtccggccttgcaatttcggt 39831542  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| || |||||||| ||||    
T  39831543 atttgccagttgagctaggacttataga 39831570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 206 - 326
Target Start/End: Complemental strand, 16654488 - 16654366
Alignment:
Q  206 ttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccgg-tcacgacgtctgaccttgtaa-ttcggcatt 303  Q
    |||||| ||| || |||||||| ||| ||||| |||| ||||||||||||| ||| |||||||| ||| ||||| |||| | ||||| || |||||||||    
T  16654488 ttagatgaaggggcaattcactaaaaataaactcacacacaactgtgaggttccgggttcgaactcggatcacggcgtccggccttgcaatttcggcatt 16654389  T
Q  304 taccagttaagttaggacttcta 326  Q
    || ||||| ||||||||||||||    
T  16654388 tatcagttgagttaggacttcta 16654366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 203 - 283
Target Start/End: Complemental strand, 4851448 - 4851367
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccgg-tcacgacgtc 283  Q
    ||||| ||| |||||||||| |||| ||||||||| |||| ||||||||||||||||| ||| |||||||| ||||||||||    
T  4851448 gtcttggatgaagtggtaatccactaaaattaaactcacacacaactgtgaggtcccgggtttgaacccggatcacgacgtc 4851367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 203 - 328
Target Start/End: Original strand, 7275886 - 7276014
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| || | ||||||||   ||| ||||||||||||||||| |||||||||| || |||||| || ||||||| || ||||||    
T  7275886 gtcttagatgaagtggtaatccattaaaattaaatttacacacaactgtgaggtcccgggttcgaacccgggccacgacatccgaccttgcaatttcggc 7275985  T
Q  301 a-tttaccagttaagttaggacttctaga 328  Q
    | |||  ||||| ||||||||||||||||    
T  7275986 attttgtcagttgagttaggacttctaga 7276014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 203 - 329
Target Start/End: Original strand, 34239820 - 34239948
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccg-gtcacgacgtctgaccttgtaa-ttcggc 300  Q
    |||||| || ||||||||||| | ||||||||||| || | |||||||| |||| | | |||||||| || ||||||||||||||||||  || ||||||    
T  34239820 gtcttaaatgaagtggtaatttattgaaattaaactcatacacaactgtaaggttctgagttcgaactcgagtcacgacgtctgaccttacaatttcggc 34239919  T
Q  301 atttaccagttaagttaggacttctagat 329  Q
    |||| | |||  |||||||||||||||||    
T  34239920 atttgctagtagagttaggacttctagat 34239948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 203 - 273
Target Start/End: Original strand, 29659218 - 29659288
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccgg 273  Q
    ||||||||| |||||||||| |||||||| ||||| |||| ||||||||||||||  | ||||||||||||    
T  29659218 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcatgggttcgaacccgg 29659288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 203 - 256
Target Start/End: Complemental strand, 42578296 - 42578243
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggt 256  Q
    ||||||||| |||||||||| |||||||| ||||| |||| |||||||||||||    
T  42578296 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggt 42578243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 19816348 - 19816221
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccgg-tcacgacgtctgaccttgtaatt-cggc 300  Q
    ||||||||| |||| |||||  ||||||| ||||| || | ||||||| ||||| ||| |||| ||||||| |||| ||||| | ||||| |||| |||     
T  19816348 gtcttagatgaagttgtaatctactgaaaataaactcatacacaactgcgaggttccgggttcaaacccgggtcacaacgtccggccttgcaatttcggt 19816249  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| || |||||||||||||    
T  19816248 atttgccagttgagctaggacttctaga 19816221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 205 - 326
Target Start/End: Original strand, 20497592 - 20497715
Alignment:
Q  205 cttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccgg-tcacgacgtctgaccttgtaatt-cggcat 302  Q
    ||||||| |||||||||  ||||||||| |||| ||||||||| |||||||| ||| ||| ||||| |  |||||||||   ||||| ||||| || |||    
T  20497592 cttagatgaagtggtaaaccactgaaataaaactcacatacaattgtgaggttccgggtttgaacctgaatcacgacgttcaaccttataatttcgacat 20497691  T
Q  303 ttaccagttaagttaggacttcta 326  Q
    || | |||| ||||||||||||||    
T  20497692 tttctagttgagttaggacttcta 20497715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 283
Target Start/End: Complemental strand, 4801001 - 4800923
Alignment:
Q  206 ttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaac-ccggtcacgacgtc 283  Q
    |||||| |||||||||||||||| |||||||| |||| | ||| | ||||| ||| |||||||| | ||||||||||||    
T  4801001 ttagatgaagtggtaattcactggaattaaactcacacataaccgcgaggttccgggttcgaactcaggtcacgacgtc 4800923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 260
Target Start/End: Original strand, 44181887 - 44181944
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccg 260  Q
    ||||||||| ||||| |||| |||||||| ||||| |||| ||||||||||| |||||    
T  44181887 gtcttagattaagtgataatccactgaaaataaactcacacacaactgtgagatcccg 44181944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 34234656 - 34234531
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccgg-tcacgacgtctgaccttgtaatt-cggc 300  Q
    ||||||||| ||||||| ||  ||||||||||||| ||||  ||||| ||||||| || |||| ||| | | |||| || || ||||||| |||| ||||    
T  34234656 gtcttagatgaagtggtgatctactgaaattaaactcaca--caactatgaggtctcgggttcaaactcagatcacaacatccgaccttgcaatttcggc 34234559  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| || |||||||||||||    
T  34234558 atttgccagttgagctaggacttctaga 34234531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 328
Target Start/End: Original strand, 45201903 - 45201999
Alignment:
Q  234 aaacccacatacaactgtgaggtcccgtgttcgaacccgg-tcacgacgtctgaccttgtaa-ttcggcatttaccagttaagttaggacttctaga 328  Q
    |||| |||| ||||||||||||| ||| |||||||| ||| |||||||| | ||||||  || |||| ||||| ||| || ||||||||||||||||    
T  45201903 aaactcacacacaactgtgaggttccgagttcgaactcggatcacgacgaccgaccttacaatttcgacatttgccaattgagttaggacttctaga 45201999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1348 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold1348
Description:

Target: scaffold1348; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 203 - 328
Target Start/End: Original strand, 862 - 989
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| |||||||| ||||| |||| ||||||||||||||||| |||||||||| ||||| |||||| | ||||| || ||||||    
T  862 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggc 961  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| || |||||||||||||    
T  962 atttgccagttgagctaggacttctaga 989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 203 - 328
Target Start/End: Original strand, 70523 - 70650
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| |||||||| ||||| |||| ||||||||||||||||| |||| ||||| ||||| |||||| ||||||| || ||||||    
T  70523 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcaaacccgggtcatgacgtccgaccttgcaatttcggc 70622  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| || |||||||||||||    
T  70623 atttgccagttgagctaggacttctaga 70650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 203 - 328
Target Start/End: Original strand, 6602518 - 6602645
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| |||||||| ||||| |||| ||||||||||||||||| |||||||||| ||||| |||||| | ||||| || ||||||    
T  6602518 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggc 6602617  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| || |||||||||||||    
T  6602618 atttgccagttgagctaggacttctaga 6602645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 203 - 328
Target Start/End: Original strand, 6677971 - 6678098
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| |||||||| ||||| |||| ||||||||||||||||| |||||||||| ||||| |||||| | ||||| || ||||||    
T  6677971 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggc 6678070  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| || |||||||||||||    
T  6678071 atttgccagttgagctaggacttctaga 6678098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 32333242 - 32333115
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| |||||||| ||||| |||| ||||||||||||||||| |||||||||| |||||| ||||| | ||||| || ||||||    
T  32333242 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcacaacgtccggccttgcaatttcggc 32333143  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| || |||||||||||||    
T  32333142 atttgccagttgagctaggacttctaga 32333115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 203 - 328
Target Start/End: Original strand, 45264640 - 45264766
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccg-gtcacgacgtctgaccttgtaattcggca 301  Q
    ||||||||  |||||||||| |||||||||||||| |||| | ||||||||||||||| ||||||||||| ||||||||||  |||||   | |||||||    
T  45264640 gtcttagaggaagtggtaatccactgaaattaaactcacacaaaactgtgaggtcccgggttcgaacccgagtcacgacgttcgacctgcaatttcggca 45264739  T
Q  302 tttaccagttaagttaggacttctaga 328  Q
    ||| |||||| ||||||||||||||||    
T  45264740 tttgccagttgagttaggacttctaga 45264766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 203 - 328
Target Start/End: Original strand, 1078648 - 1078775
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacc-cggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| |||||||| ||||| |||| ||||||||||||||||| |||||||||  ||||| |||||| | ||||| || ||||||    
T  1078648 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacctgggtcatgacgtccggccttgcaatttcggc 1078747  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    ||||||||||| || || ||||||||||    
T  1078748 atttaccagttgagctacgacttctaga 1078775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 28817384 - 28817257
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| |||||||| ||||| |||| ||||||||||| ||||| |||||||||| |||||| ||||| | ||||| || ||||||    
T  28817384 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgagatcccgggttcgaacccgggtcacaacgtccggccttgcaatttcggc 28817285  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| || |||||||||||||    
T  28817284 atttgccagttgagctaggacttctaga 28817257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 203 - 328
Target Start/End: Original strand, 31969720 - 31969847
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccgg-tcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||  |||||||||||||  |||| |||||| ||||||||||||||||||||||| ||| |||||||| ||||| || ||||||    
T  31969720 gtcttagatgaagtggtaaaccactgaaattaaattcacacacaactttgaggtcccgtgttcgaacccggatcatgacgtctggccttgaaatttcggc 31969819  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| ||| ||||| || ||||||||||    
T  31969820 atttgccaattaagctatgacttctaga 31969847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 203 - 328
Target Start/End: Original strand, 35779497 - 35779624
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| |||||||| ||||| |||| ||||||||||||||||| |||||||||| |||||| ||||| | ||||| || || |||    
T  35779497 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcacaacgtccggccttgcaattttggc 35779596  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| || |||||||||||||    
T  35779597 atttgccagttgagctaggacttctaga 35779624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 203 - 328
Target Start/End: Original strand, 42192639 - 42192766
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaac-ccggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| |||||||| ||||| |||| ||||||||||| ||||| |||||||| | ||||| |||||| | ||||| || ||||||    
T  42192639 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgagatcccgggttcgaactcgggtcatgacgtccggccttgcaatttcggc 42192738  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| || |||||||||||||    
T  42192739 atttgccagttgagctaggacttctaga 42192766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 203 - 328
Target Start/End: Original strand, 10963242 - 10963367
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccgg-tcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| |||||||| ||||| ||||  |||||||||||||||| ||||||||| || |||| ||||  | |||||||| ||||||    
T  10963242 gtcttagatgaagtggtaatccactgaaaataaactcaca--caactgtgaggtcccgggttcgaacctggatcacaacgttcggccttgtaatttcggc 10963339  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| || |||||||||||||    
T  10963340 atttgccagttgagctaggacttctaga 10963367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 203 - 328
Target Start/End: Original strand, 1340 - 1467
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacc-cggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| |||||||| ||||| |||| ||||||||||||||||| |||||||||  |||||| ||||| | ||||| || || |||    
T  1340 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaaccagggtcacaacgtccggccttgcaattttggc 1439  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| || ||| |||||||||    
T  1440 atttgccagttgagctagaacttctaga 1467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 203 - 328
Target Start/End: Original strand, 4530982 - 4531109
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||  |||||||||||||| |||| ||| ||||||||||||| |||||||||| ||||| ||||||   ||||| || ||||||    
T  4530982 gtcttagatgaagtggtaaaccactgaaattaaactcacacacagctgtgaggtcccgggttcgaacccgggtcatgacgtccagccttgcaatttcggc 4531081  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| ||| || || |||||||||||||    
T  4531082 atttgccaattgagctaggacttctaga 4531109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 7792789 - 7792662
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccg-gtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||| ||||| |||||||| ||||| |||| ||||||||||| ||||| ||||||||||| ||||| |||||   ||||| || ||||||    
T  7792789 gtcttagatgaagtagtaatccactgaaaataaactcacacacaactgtgagatcccgggttcgaacccgagtcacaacgtccagccttgcaatttcggc 7792690  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| || |||||||||||||    
T  7792689 atttgccagttgagctaggacttctaga 7792662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 204 - 328
Target Start/End: Complemental strand, 40911347 - 40911222
Alignment:
Q  204 tcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggca 301  Q
    |||||||| |||||||||  |||||||||||||| |||| |||  |||||||||||| |||||||||| |||||||||||| | ||||| || |||||||    
T  40911347 tcttagatgaagtggtaagccactgaaattaaactcacacacagttgtgaggtcccg-gttcgaacccgggtcacgacgtccggccttgcaatttcggca 40911249  T
Q  302 tttaccagttaagttaggacttctaga 328  Q
    ||| |||||| || ||| |||||||||    
T  40911248 tttgccagttgagctagcacttctaga 40911222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 203 - 311
Target Start/End: Complemental strand, 42885302 - 42885192
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| |||||||| ||||| |||| ||||||||||| ||||| |||||||||| ||||| |||||| | ||||| || ||||||    
T  42885302 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgagatcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggc 42885203  T
Q  301 atttaccagtt 311  Q
    |||| ||||||    
T  42885202 atttgccagtt 42885192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 206 - 328
Target Start/End: Complemental strand, 7813447 - 7813323
Alignment:
Q  206 ttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccg-gtcacgacgtctgaccttgtaa-ttcggcatt 303  Q
    |||||| |||||||||| |||||||| ||||| |||| ||||||||||||||||| ||||||||||| ||||| || || | ||||| || ||| |||||    
T  7813447 ttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgagtcacaacatccggccttgcaatttcagcatt 7813348  T
Q  304 taccagttaagttaggacttctaga 328  Q
    | || ||| || |||||||||||||    
T  7813347 tgccggttgagctaggacttctaga 7813323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 3822524 - 3822397
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||  ||||||||||||||| ||||||||| |||| ||||||||||| ||| | |||||||||| |||||| ||||| ||||||  || ||||||    
T  3822524 gtcttagaagaagtggtaattcactaaaattaaactcacacacaactgtgagatcctgggttcgaacccgggtcacaacgtccgaccttacaatttcggc 3822425  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| |  ||| |||||||||    
T  3822424 atttgccagttgaactagaacttctaga 3822397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 213 - 283
Target Start/End: Complemental strand, 5385456 - 5385385
Alignment:
Q  213 aagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacc-cggtcacgacgtc 283  Q
    ||||||||| ||||||||||||||| |||| ||||||||||||||||| |||||||||  ||||||||||||    
T  5385456 aagtggtaaatcactgaaattaaactcacacacaactgtgaggtcccgggttcgaacctgggtcacgacgtc 5385385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 203 - 325
Target Start/End: Complemental strand, 39303438 - 39303313
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaatt-aaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcgg 299  Q
    ||||||||| |||||||||| |||||||||| |||| |||| |||||||||||||| || |||| |||||  |||| |||||| | ||||| || |||||    
T  39303438 gtcttagatgaagtggtaatccactgaaattaaaactcacacacaactgtgaggtctcgggttcaaacccatgtcatgacgtccggccttgcaatttcgg 39303339  T
Q  300 catttaccagttaagttaggacttct 325  Q
    ||||| |||||| || ||||||||||    
T  39303338 catttgccagttgagctaggacttct 39303313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 203 - 328
Target Start/End: Original strand, 12534720 - 12534845
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccgg-tcacgacgtctgaccttgtaatt-cggc 300  Q
    ||||||||| ||||||||||  ||||||| ||||| |||   |||||||||| ||| | |||||||||||| |||||||||| | ||||| |||| ||||    
T  12534720 gtcttagatgaagtggtaatctactgaaaataaactcacg--caactgtgagatcctgggttcgaacccggatcacgacgtccggccttgcaatttcggc 12534817  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| || |||||||||||||    
T  12534818 atttgccagttgagctaggacttctaga 12534845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 204 - 324
Target Start/End: Original strand, 41849233 - 41849354
Alignment:
Q  204 tcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggca 301  Q
    |||||||| || ||||||| |||||||||||||| |||| ||||| ||||||| |||  ||||||||| | |||||||||| ||||||| || |||||||    
T  41849233 tcttagatgaaatggtaat-cactgaaattaaactcacacacaacagtgaggttccggattcgaacccagatcacgacgtccgaccttgcaatttcggca 41849331  T
Q  302 tttaccagttaagttaggacttc 324  Q
    ||| |||||| | ||| ||||||    
T  41849332 tttgccagttgaattaagacttc 41849354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 259
Target Start/End: Original strand, 31532128 - 31532181
Alignment:
Q  206 ttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtccc 259  Q
    |||||| |||||||||| |||||||||||||| |||| ||||||||||||||||    
T  31532128 ttagatgaagtggtaatccactgaaattaaactcacacacaactgtgaggtccc 31532181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 204 - 290
Target Start/End: Complemental strand, 18752468 - 18752381
Alignment:
Q  204 tcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaa-cccggtcacgacgtctgacctt 290  Q
    ||||| || |||||  ||| ||||||||||||||||||| |||||||| |||| ||| ||||||| |||| |||||||||| ||||||    
T  18752468 tcttanatgaagtgtcaatccactgaaattaaacccacacacaactgtaaggttccgggttcgaaccccgatcacgacgtccgacctt 18752381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 39435410 - 39435283
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||| ||||| |||  ||||||||| |||| |||||||||||||| || |||||||||| | ||| |||||| ||||||| || || | |    
T  39435410 gtcttagatgaagtcgtaatccacataaattaaactcacacacaactgtgaggtctcgggttcgaacccagatcatgacgtccgaccttgcaattttgac 39435311  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| || ||| |||||||||    
T  39435310 atttgccagttgagctagaacttctaga 39435283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 203 - 272
Target Start/End: Complemental strand, 13891218 - 13891149
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccg 272  Q
    ||||||||| |||||||||  |||||||| ||||| |||| |||||||||||||||   |||||||||||    
T  13891218 gtcttagatgaagtggtaaaccactgaaaataaactcacacacaactgtgaggtcctaggttcgaacccg 13891149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 203 - 291
Target Start/End: Complemental strand, 2907142 - 2907054
Alignment:
Q  203 gtcttagataaagtggtaattcact-gaaattaaacccacatacaactgtgaggtcccgtgttcgaacccgg-tcacgacgtctgaccttg 291  Q
    ||||||||  |||||||||| |||| |||||||||| | ||||  |||||||||||||| |||| ||||||| |||||||||| |||||||    
T  2907142 gtcttagacgaagtggtaatccacttgaaattaaactcccata--actgtgaggtcccgggttcaaacccggatcacgacgtccgaccttg 2907054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 204 - 290
Target Start/End: Original strand, 7403696 - 7403782
Alignment:
Q  204 tcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccg-gtcacgacgtctgacctt 290  Q
    |||||||| |||||||||| |||||||||||| | |||| |||||||||| ||| ||  ||||||| || ||||||||||| ||||||    
T  7403696 tcttagatgaagtggtaat-cactgaaattaagctcacaaacaactgtgatgtctcggattcgaactcgagtcacgacgtccgacctt 7403782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 253
Target Start/End: Original strand, 42364702 - 42364752
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtga 253  Q
    |||||||||||||||||||   ||||||||||||| |||| ||||||||||    
T  42364702 gtcttagataaagtggtaaactactgaaattaaactcacacacaactgtga 42364752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 328
Target Start/End: Complemental strand, 18386806 - 18386709
Alignment:
Q  233 taaacccacatacaactgtgaggtcccgtgttcgaacccg-gtcacgacgtctgaccttgtaa-ttcggcatttaccagttaagttaggacttctaga 328  Q
    ||||| |||| ||||||||||||||||| ||||||||||| |||| ||| || ||||||| || ||| ||||||  ||||| || ||| |||||||||    
T  18386806 taaactcacacacaactgtgaggtcccgggttcgaacccgagtcatgacatccgaccttgcaatttcagcatttgtcagttgagctagaacttctaga 18386709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 260
Target Start/End: Complemental strand, 29425479 - 29425422
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccg 260  Q
    ||||||||| |||||||||| |||||||||||||| |||| |||| || ||| |||||    
T  29425479 gtcttagatgaagtggtaatccactgaaattaaactcacacacaattgcgagatcccg 29425422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 268
Target Start/End: Original strand, 31695269 - 31695334
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaa 268  Q
    ||||||||| |||||||||  || ||||||||||| |||| |||| |||||||||||  |||||||    
T  31695269 gtcttagatgaagtggtaaaccattgaaattaaactcacacacaattgtgaggtcccaggttcgaa 31695334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 271
Target Start/End: Original strand, 9775042 - 9775110
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc 271  Q
    ||||||||| |||| ||||| || | ||||||||| |||| | ||||||||||| ||| ||||||||||    
T  9775042 gtcttagatgaagttgtaatccattcaaattaaactcacacataactgtgaggttccgggttcgaaccc 9775110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 33621622 - 33621495
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||  |||||||||||||| |||| ||||||||||||||||| |||||||||| ||||| |||||| | ||||| || ||||||    
T  33621622 gtcttagatgaagtggtaaaccactgaaattaaactcacacacaactgtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggc 33621523  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| || |||||||||||||    
T  33621522 atttgccagttgagctaggacttctaga 33621495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 33704344 - 33704217
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    |||||| || |||||||||| |||||||| ||||| |||| ||||||||||||||||| |||||||||| ||||| |||||| | ||||| || ||||||    
T  33704344 gtcttaaatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggc 33704245  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| || |||||||||||||    
T  33704244 atttgccagttgagctaggacttctaga 33704217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 21000820 - 21000693
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    |||| |||| |||||||||  ||||||||||||||||||| |||| |||||||||||| |||||||||| ||||| |||||  | ||||| || ||||||    
T  21000820 gtctcagatgaagtggtaaaccactgaaattaaacccacacacaattgtgaggtcccgggttcgaacccaggtcatgacgtacggccttgcaatttcggc 21000721  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| || |||||||||||||    
T  21000720 atttgccagttgagctaggacttctaga 21000693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 28323060 - 28322933
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccgg-tcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||  |||||||| ||||| |||| |||| |||||||||||| |||||||||||| ||| |||||| | ||||  || ||||||    
T  28323060 gtcttagatgaagtggtaaaccactgaaactaaactcacacacaattgtgaggtcccgggttcgaacccggatcatgacgtccggccttacaatttcggc 28322961  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| || |||||||||||||    
T  28322960 atttgccagttgagctaggacttctaga 28322933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 203 - 304
Target Start/End: Complemental strand, 4464255 - 4464152
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccgg-tcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||  |||||||||||||| |||| ||||||||||||||||  |||||||||||| ||| |||||| | ||||| || ||||||    
T  4464255 gtcttagatgaagtggtaaaccactgaaattaaactcacacacaactgtgaggtcccaggttcgaacccggatcatgacgtccggccttgcaatttcggc 4464156  T
Q  301 attt 304  Q
    ||||    
T  4464155 attt 4464152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 21037418 - 21037292
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccg-gtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| ||||||||||||||||||| ||||| |||| ||||||||||||| |||  |||||||||| ||||| ||||| | ||||| || ||| ||    
T  21037418 gtcttagatgaagtggtaattcactgaaaataaactcacacacaactgtgaggt-ccggattcgaacccgagtcacaacgtccggccttgcaatttcagc 21037320  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| || ||| |||||||||    
T  21037319 atttgccagttgagctagaacttctaga 21037292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 203 - 272
Target Start/End: Complemental strand, 361139 - 361070
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccg 272  Q
    ||||||||| ||||| |||| |||||||||||||| |||||| ||||||||||| ||| |||||||||||    
T  361139 gtcttagatgaagtgttaatccactgaaattaaactcacatataactgtgaggttccgggttcgaacccg 361070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 203 - 296
Target Start/End: Complemental strand, 19145598 - 19145505
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccggtcacgacgtctgaccttgtaatt 296  Q
    ||||||||| |||||||||| |||||||||||||  |||| |||| |||||||||||| |||| || | |||||||||||| | ||||| ||||    
T  19145598 gtcttagatgaagtggtaatccactgaaattaaattcacacacaattgtgaggtcccgggttcaaaacgggtcacgacgtccggccttgcaatt 19145505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 268
Target Start/End: Original strand, 29009650 - 29009715
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaa 268  Q
    ||||||||| ||||||||||||||| ||| ||||| |||| ||||||||||||||||  |||||||    
T  29009650 gtcttagatgaagtggtaattcactaaaaataaactcacacacaactgtgaggtcccaggttcgaa 29009715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 260
Target Start/End: Original strand, 35218640 - 35218697
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccg 260  Q
    ||||||||| |||||||||| |||||||| ||||| |||| |||||||||||||||||    
T  35218640 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccg 35218697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 2959277 - 2959150
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacc-cggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    |||| |||| |||||||| | ||| |||||||||| |||| |||||||||||||| || |||||||||   |||||||  || | ||||| || ||||||    
T  2959277 gtctaagatgaagtggtattccacggaaattaaactcacacacaactgtgaggtctcgggttcgaacctaagtcacgatatccggccttgcaatttcggc 2959178  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| | |||| ||||||||||||||||    
T  2959177 atttgctagttgagttaggacttctaga 2959150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 233 - 290
Target Start/End: Complemental strand, 11572106 - 11572048
Alignment:
Q  233 taaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgacctt 290  Q
    ||||| |||| ||||||||||||||||| |||||||||| |||||||||||||| ||||    
T  11572106 taaactcacacacaactgtgaggtcccgggttcgaacccgggtcacgacgtctggcctt 11572048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 213 - 254
Target Start/End: Original strand, 10999418 - 10999459
Alignment:
Q  213 aagtggtaattcactgaaattaaacccacatacaactgtgag 254  Q
    |||||||||| |||||||||||||| ||||||||||||||||    
T  10999418 aagtggtaatccactgaaattaaactcacatacaactgtgag 10999459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 203 - 296
Target Start/End: Complemental strand, 16518549 - 16518457
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaatt 296  Q
    ||||||||| || ||||||| |||||||| ||||| ||||  |||||||||| ||| | |||||||||| |||||| ||||| ||||||| ||||    
T  16518549 gtcttagatgaaatggtaatccactgaaaataaactcaca--caactgtgagctcctgggttcgaacccaggtcacaacgtccgaccttgcaatt 16518457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 257
Target Start/End: Original strand, 28592128 - 28592182
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtc 257  Q
    |||||||||||| ||||||| || ||||| ||||| |||| ||||||||||||||    
T  28592128 gtcttagataaattggtaatccattgaaaataaactcacacacaactgtgaggtc 28592182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 268
Target Start/End: Complemental strand, 32289473 - 32289408
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaa 268  Q
    ||||| ||| ||||||||||||||||| | |||||  ||| |||||||||||||| || |||||||    
T  32289473 gtctttgatgaagtggtaattcactgataataaacttacacacaactgtgaggtctcgagttcgaa 32289408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 282
Target Start/End: Original strand, 24619079 - 24619159
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaac-ccggtcacgacgt 282  Q
    ||||||||| ||||||||||  ||||||||||||| |||| |||| | ||||||| || | |||||| | |||||||||||    
T  24619079 gtcttagatgaagtggtaatcgactgaaattaaactcacacacaattatgaggtcacgggatcgaactcgggtcacgacgt 24619159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 13204085 - 13203958
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| |||||||| ||||| |||| | ||||||||||||||| |||||||||| |||||||||||| | ||||| || ||||||    
T  13204085 gtcttagatgaagtggtaatccactgaaaataaactcacacataactgtgaggtcccgggttcgaacccgggtcacgacgtccggccttgcaatttcggc 13203986  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| || |||||||||||||    
T  13203985 atttgccagttgagctaggacttctaga 13203958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 213 - 328
Target Start/End: Complemental strand, 27721549 - 27721432
Alignment:
Q  213 aagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggcatttaccagt 310  Q
    |||||||||| |||||||||||||  |||||||||||||||||||||| |||| ||||| |||||||||||| ||| ||| || |||||||||| |||||    
T  27721549 aagtggtaatccactgaaattaaattcacatacaactgtgaggtcccgggttcaaacccgggtcacgacgtccgactttgcaatttcggcattttccagt 27721450  T
Q  311 taagttaggacttctaga 328  Q
    | || |||||||||||||    
T  27721449 tgagctaggacttctaga 27721432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 203 - 328
Target Start/End: Original strand, 35317697 - 35317824
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| |||||||| ||||| |||| ||||||||||||||||| |||||| ||| |||||  ||||| ||||||| || ||||||    
T  35317697 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaccccaggtcataacgtccgaccttgcaatttcggc 35317796  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| || |||||||||||||    
T  35317797 atttgccagttgagctaggacttctaga 35317824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 21018351 - 21018224
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| |||||||| ||||| |||| ||||||||||||||||| |||||||||| |||||| ||||| | ||| | || || |||    
T  21018351 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcacaacgtccggcctcgcaattttggc 21018252  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| || |||||||||||||    
T  21018251 atttgccagttgagctaggacttctaga 21018224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 29266003 - 29265876
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaa-cccggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| |||||||| ||||| |||| ||||||||||||||||| ||||||| || |||||| || |  |||||||||| |||| |    
T  29266003 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaatccgggtcacaacattcgaccttgtaatttcgac 29265904  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| | |||| ||||||||||||||||    
T  29265903 attttctagttgagttaggacttctaga 29265876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 203 - 296
Target Start/End: Original strand, 31909385 - 31909479
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaatt 296  Q
    ||||||||| |||||||||| |||||||| ||||| |||| ||||||||||||||||| |||||||||| ||||| |||||||| ||||| ||||    
T  31909385 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcatgacgtctggccttgcaatt 31909479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 203 - 330
Target Start/End: Original strand, 4824939 - 4825068
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacc-cggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| || ||||| ||||| |||| ||||||||||||||||| ||| |||||  |||||| ||||| | ||||| || ||||||    
T  4824939 gtcttagatgaagtggtaatccattgaaaataaactcacacacaactgtgaggtcccgggtttgaacctgggtcacaacgtccggccttgcaatttcggc 4825038  T
Q  301 atttaccagttaagttaggacttctagatt 330  Q
    |||| |||||| || |||||||||||||||    
T  4825039 atttgccagttgagctaggacttctagatt 4825068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 206 - 328
Target Start/End: Original strand, 1191543 - 1191667
Alignment:
Q  206 ttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccgg-tcacgacgtctgaccttgtaa-ttcggcatt 303  Q
    |||||| |||| ||||  |||||||||||||| |||| |||| |||||||||||| |||||||||||| |||||||||| | ||||| || |||| ||||    
T  1191543 ttagatgaagttgtaagccactgaaattaaactcacacacaattgtgaggtcccgggttcgaacccggatcacgacgtccggccttgcaatttcgtcatt 1191642  T
Q  304 taccagttaagttaggacttctaga 328  Q
    | |||||| || |||||||||||||    
T  1191643 tgccagttgagctaggacttctaga 1191667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 2971112 - 2970985
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| ||| |||| ||||| |||| |||||||||||||| |  |||||||||| |||||| ||||||||||||  || |||| |    
T  2971112 gtcttagatgaagtggtaatccaccgaaaataaactcacacacaactgtgaggtctcaggttcgaacccgggtcacaacgtctgaccttacaatttcgac 2971013  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    ||||| ||||| || |||||||||||||    
T  2971012 atttatcagttgagctaggacttctaga 2970985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 12257484 - 12257357
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaatt-cggc 300  Q
    ||||||||| |||||||||| |||||||| ||||| |||| |||| | |||||||| | |||||||||| |||||| ||||||| ||||  |||| ||||    
T  12257484 gtcttagatgaagtggtaatccactgaaaataaactcacacacaattatgaggtcctgggttcgaacccaggtcacaacgtctggccttacaatttcggc 12257385  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| || |||||||||||||    
T  12257384 atttgccagttgagctaggacttctaga 12257357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 227 - 328
Target Start/End: Original strand, 9576985 - 9577088
Alignment:
Q  227 tgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggcatttaccagttaagttaggacttc 324  Q
    ||||||||||| |||||||||||||||||| | | |||||||||| ||||| |||||||| ||||| || ||| |||||| |||||| || |||||||||    
T  9576985 tgaaattaaactcacatacaactgtgaggttctgggttcgaacccaggtcatgacgtctggccttgcaatttcagcatttgccagttgagctaggacttc 9577084  T
Q  325 taga 328  Q
    ||||    
T  9577085 taga 9577088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 206 - 326
Target Start/End: Complemental strand, 6021117 - 6020995
Alignment:
Q  206 ttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaa-cccggtcacgacgtctgaccttgtaa-ttcggcatt 303  Q
    ||||||||||||||||| |||||||| ||||| |||| ||||||| ||||||||| ||||||| || |||||| ||||| | ||||| || || | ||||    
T  6021117 ttagataaagtggtaatccactgaaaataaactcacacacaactgagaggtcccgggttcgaatccgggtcacaacgtcaggccttgcaattttgacatt 6021018  T
Q  304 taccagttaagttaggacttcta 326  Q
    | ||| || ||||||||||||||    
T  6021017 tgccaattgagttaggacttcta 6020995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 203 - 325
Target Start/End: Complemental strand, 8734125 - 8734000
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacc-cacatacaactgtgaggtcccgtgttcgaacc-cggtcacgacgtctgaccttgtaa-ttcgg 299  Q
    ||||||||| |||||||||| ||||||| ||||| | ||| |||||||||||||| ||| |||||||||  |||||||||||| | ||||| || ||| |    
T  8734125 gtcttagatgaagtggtaatccactgaagttaaaactcacgtacaactgtgaggttccgggttcgaacctaggtcacgacgtccggccttgcaatttcag 8734026  T
Q  300 catttaccagttaagttaggacttct 325  Q
    ||||| |||||| || ||||||||||    
T  8734025 catttgccagttgagctaggacttct 8734000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 203 - 268
Target Start/End: Complemental strand, 35546061 - 35545996
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaa 268  Q
    ||||||||| ||||| |||| |||| |||||||||||||||||||||||||||||||  |||||||    
T  35546061 gtcttagatgaagtgataatccacttaaattaaacccacatacaactgtgaggtcccaggttcgaa 35545996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 260
Target Start/End: Original strand, 32143414 - 32143471
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccg 260  Q
    ||||||||| |||||||||| |||||||| ||||| |||| |||||||||||||||||    
T  32143414 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccg 32143471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 11124780 - 11124653
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaa-cccggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| |||| |||||||||||||||| || | |||||| | | ||||||| |  |||||||||||| | ||||| || || | |    
T  11124780 gtcttagatgaagtggtaatccactcaaattaaacccacataaaattatgaggttctgggttcgaatcaaggtcacgacgtccggccttgcaattttgac 11124681  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| || |||||||||||||    
T  11124680 atttgccagttgagctaggacttctaga 11124653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 328
Target Start/End: Complemental strand, 40177749 - 40177625
Alignment:
Q  206 ttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaatt-cggcatt 303  Q
    |||||| |||||||||| |||||||| ||||| |||| ||||| |||| || ||| ||| ||| || |||||| ||||| | ||||| |||| || ||||    
T  40177749 ttagatgaagtggtaatccactgaaaataaactcacacacaacggtgaagttccgggttggaatccaggtcacaacgtccggccttgcaatttcgacatt 40177650  T
Q  304 taccagttaagttaggacttctaga 328  Q
    |  |||||||| |||||||||||||    
T  40177649 tgtcagttaagctaggacttctaga 40177625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 2786398 - 2786272
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccgg-tcacgacgtctgaccttgtaatt-cggc 300  Q
    ||||||||| |||||||||| ||||||| |||||| || | ||||||||||||||||  ||| |||  ||| ||||| |||| ||||||  |||| ||||    
T  2786398 gtcttagatgaagtggtaatccactgaa-ttaaactcatacacaactgtgaggtcccaggtttgaattcggatcacggcgtccgaccttacaatttcggc 2786300  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| ||| || | ||||||||||||||    
T  2786299 atttgccaattgaattaggacttctaga 2786272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 272
Target Start/End: Original strand, 17984745 - 17984811
Alignment:
Q  206 ttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccg 272  Q
    |||||| ||||| |||  |||| ||||||||| |||| ||||||||||||| ||| |||||||||||    
T  17984745 ttagatgaagtgataagccactaaaattaaactcacacacaactgtgaggttccgggttcgaacccg 17984811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 1174079 - 1173952
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| |||||||| ||||| |||| ||||||||||||||||| |||||||||| ||||| |||||| | ||||| || ||||||    
T  1174079 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccaggtcatgacgtccggccttgcaatttcggc 1173980  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| || |||||||||||||    
T  1173979 atttgccagttgagctaggacttctaga 1173952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 34739408 - 34739281
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| |||||||| ||||| |||| ||||||||||||||||| |||||||||| ||||| |||||| | ||||| || ||||||    
T  34739408 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggc 34739309  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| || |||||||||||||    
T  34739308 atttgccagttgagctaggacttctaga 34739281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 53457952 - 53457825
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| |||||||| ||||| |||| |||||||||||||||||  ||||||||| ||||| |||||| ||||||| || ||||||    
T  53457952 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccggattcgaacccgggtcatgacgtccgaccttgcaatttcggc 53457853  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| || |||||||||||||    
T  53457852 atttgccagttgagctaggacttctaga 53457825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 203 - 334
Target Start/End: Complemental strand, 55400356 - 55400223
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccgg-tcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| |||||||| ||||| ||||||||||| |||||| ||| ||||||| |||| ||| |||||| | ||||| || ||||||    
T  55400356 gtcttagatgaagtggtaatccactgaaaataaactcacatacaactatgaggttccgagttcgaatccggatcatgacgtccggccttgcaatttcggc 55400257  T
Q  301 atttaccagttaagttaggacttctagattaata 334  Q
    ||||||||||| |||||||| ||||||| |||||    
T  55400256 atttaccagttgagttaggatttctagactaata 55400223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 203 - 328
Target Start/End: Original strand, 19849503 - 19849630
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccgg-tcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||  || ||||| ||||| |||| ||||||||||||||||| |||||||||||| |||||||||| | ||||| || ||||||    
T  19849503 gtcttagatgaagtggtaaaccattgaaaataaactcacacacaactgtgaggtcccgggttcgaacccggatcacgacgtccggccttgcaatttcggc 19849602  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| || |||||||||||||    
T  19849603 atttgccagttgagctaggacttctaga 19849630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 203 - 328
Target Start/End: Original strand, 26424858 - 26424984
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| |||||||| ||||| |||| ||||||||||||||||| |||||||||| ||||| |||||| | ||||| || ||||||    
T  26424858 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcatgacgtccg-ccttgcaatttcggc 26424956  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| || |||||||||||||    
T  26424957 atttgccagttgagctaggacttctaga 26424984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 203 - 328
Target Start/End: Original strand, 28798388 - 28798515
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| |||||||| ||||| |||| |||||||| |||||||| |||||||||| |||||||||||| | ||||| || ||||||    
T  28798388 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtaaggtcccgggttcgaacccgggtcacgacgtccggccttgcaatttcggc 28798487  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| |  |||||||||||||    
T  28798488 atttgccagttgaactaggacttctaga 28798515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 203 - 328
Target Start/End: Original strand, 43139906 - 43140033
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| |||||||| ||||| |||| ||||||||||||||||| |||||||||| ||||| |||||| | ||||| || ||||||    
T  43139906 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggc 43140005  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| || ||| |||||||||    
T  43140006 atttgccagttgagctagaacttctaga 43140033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 204 - 333
Target Start/End: Complemental strand, 55214779 - 55214648
Alignment:
Q  204 tcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggca 301  Q
    ||||||||||||||||||| |||||||| ||||| || | ||||||||||||||||| |||||||||| |||||||||||| | ||||| || || ||||    
T  55214779 tcttagataaagtggtaatccactgaaaataaactcatacacaactgtgaggtcccgggttcgaacccgggtcacgacgtccggccttgcaattttggca 55214680  T
Q  302 tttaccagttaagttaggacttctagattaat 333  Q
    |||  ||||| ||||| |||||||||| ||||    
T  55214679 tttgacagttgagttaagacttctagactaat 55214648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 18257457 - 18257330
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccgg-tcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| |||||||| ||||| |||  ||||||||||||||||| | |||||||||| ||| |||||| | ||||| || ||||||    
T  18257457 gtcttagatgaagtggtaatccactgaaaataaactcacgcacaactgtgaggtcccgggctcgaacccggatcatgacgtccggccttgcaatttcggc 18257358  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| || |||||||||||||    
T  18257357 atttgccagttgagctaggacttctaga 18257330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 45874183 - 45874056
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| |||||||| ||||| |||| ||||||||||||||||| |||||||||| |||||| ||||| | ||||| || || |||    
T  45874183 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcacaacgtccggccttgcaattttggc 45874084  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    ||||  ||||| || |||||||||||||    
T  45874083 atttgtcagttgagctaggacttctaga 45874056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 213 - 308
Target Start/End: Complemental strand, 39807962 - 39807865
Alignment:
Q  213 aagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaac-ccggtcacgacgtctgaccttgtaa-ttcggcatttacca 308  Q
    |||||||||| |||||||||||||| |||| ||||||||||||||||| |||||||| | |||||||| ||||| ||||| || ||||||||||||||    
T  39807962 aagtggtaatccactgaaattaaactcacacacaactgtgaggtcccgagttcgaactcgggtcacgatgtctggccttgcaatttcggcatttacca 39807865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 203 - 328
Target Start/End: Original strand, 54768432 - 54768559
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| ||||||||  |||| | || ||||||||||||||| | |||||||||| ||||| |||||| | ||||| || ||||||    
T  54768432 gtcttagatgaagtggtaatccactgaaaaaaaactcgcacacaactgtgaggtcctgggttcgaacccgggtcatgacgtccggccttgcaatttcggc 54768531  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| || |||||||||||||    
T  54768532 atttgccagttgagctaggacttctaga 54768559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 203 - 290
Target Start/End: Complemental strand, 12735559 - 12735471
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgacctt 290  Q
    ||||||||| |||||||||| |||||||| ||||| |||| ||||||||||||||| | |||||||||| |||||| ||||||| ||||    
T  12735559 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcctgggttcgaacccgggtcacaacgtctggcctt 12735471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 203 - 328
Target Start/End: Original strand, 238458 - 238585
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||| ||| |||||||||| |||||||| ||||| |||| ||||||||||||||||| |||||||||| ||||| | ||||   ||||| || ||||||    
T  238458 gtcttcgatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccaggtcatggcgtccagccttgcaatttcggc 238557  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    ||||  ||||| || |||||||||||||    
T  238558 atttgacagttgagctaggacttctaga 238585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 12867969 - 12867842
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaac-ccggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| |||||||| ||||| |||  ||||||||||| ||||  |||||||| | |||||||||||| ||||||| || ||||||    
T  12867969 gtcttagatgaagtggtaatccactgaaaataaactcactcacaactgtgagatcccaggttcgaactcgggtcacgacgtccgaccttgcaatttcggc 12867870  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    ||||  ||||| || ||| |||||||||    
T  12867869 atttgacagttgagctagaacttctaga 12867842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 203 - 271
Target Start/End: Complemental strand, 2075633 - 2075565
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc 271  Q
    ||||||||||||||| ||| ||| ||||||||||| |||| | ||||||||||||||| ||||||||||    
T  2075633 gtcttagataaagtgataaatcattgaaattaaactcacacataactgtgaggtcccgggttcgaaccc 2075565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 203 - 321
Target Start/End: Original strand, 23417483 - 23417603
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| |||||||| ||||| |||| |||||||| | |||||| |||||||||| |||||| ||||| | ||||| || || |||    
T  23417483 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtaaagtcccgggttcgaacccgggtcacaacgtccggccttgcaattttggc 23417582  T
Q  301 atttaccagttaagttaggac 321  Q
    |||| |||||| || ||||||    
T  23417583 atttgccagttgagctaggac 23417603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 203 - 270
Target Start/End: Complemental strand, 1966678 - 1966611
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacc 270  Q
    ||||||||| |||| ||||| |||||||||||||| |||| |||||||||||||||||  ||||||||    
T  1966678 gtcttagatgaagttgtaatccactgaaattaaactcacacacaactgtgaggtcccgaattcgaacc 1966611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 207 - 328
Target Start/End: Original strand, 23710337 - 23710460
Alignment:
Q  207 tagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaa-cccggtcacgacgtctgaccttgtaa-ttcggcattt 304  Q
    ||||| |||||||||| |||||||||||||| ||||   ||||||||||| ||  ||||||| || |||||||||||| | ||||| || |||| |||||    
T  23710337 tagatgaagtggtaatccactgaaattaaactcacacgtaactgtgaggttccaggttcgaatccgggtcacgacgtccggccttgcaatttcgacattt 23710436  T
Q  305 accagttaagttaggacttctaga 328  Q
    ||||||| || || ||||||||||    
T  23710437 accagttgagctatgacttctaga 23710460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 11278106 - 11277983
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||  |||||||||||||| |    ||||||||||||||||| ||| |||||| ||||| || ||| | ||||| || ||||||    
T  11278106 gtcttagatgaagtggtaaaccactgaaattaaactc----acaactgtgaggtcccgggtttgaacccgggtcatgatgtccggccttgcaatttcggc 11278011  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| || |||||||||||||    
T  11278010 atttgccagttgagctaggacttctaga 11277983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 203 - 327
Target Start/End: Complemental strand, 19225387 - 19225261
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccgg-tcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||  |||||||| ||||| |||  |||| |||||||||||| |||||||||||| ||| |||||| | | ||  || ||||||    
T  19225387 gtcttagatgaagtggtaaaccactgaaactaaactcacgcacaattgtgaggtcccgggttcgaacccggatcatgacgtccggctttacaatttcggc 19225288  T
Q  301 atttaccagttaagttaggacttctag 327  Q
    |||| |||||| || ||||||||||||    
T  19225287 atttgccagttgagctaggacttctag 19225261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 203 - 296
Target Start/End: Complemental strand, 22608113 - 22608019
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaatt 296  Q
    |||| |||| |||| ||||| || ||||||||||| || | ||||||||||||||||| |||||||||| |||||||||||| | ||||| ||||    
T  22608113 gtctcagatgaagtagtaatccattgaaattaaactcagacacaactgtgaggtcccgggttcgaacccgggtcacgacgtccggccttgcaatt 22608019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 203 - 296
Target Start/End: Original strand, 29581044 - 29581137
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacc-cggtcacgacgtctgaccttgtaatt 296  Q
    ||||||||| |||||||||| |||| ||||||||| |||| |||||||||||||| || |||||||||  |||||||||||| | ||||| ||||    
T  29581044 gtcttagatgaagtggtaatccact-aaattaaactcacacacaactgtgaggtctcgggttcgaacctaggtcacgacgtccggccttgcaatt 29581137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 328
Target Start/End: Complemental strand, 37134166 - 37134049
Alignment:
Q  213 aagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccgg-tcacgacgtctgaccttgtaa-ttcggcatttaccagt 310  Q
    |||||||||  |||||||||||||| |||| |||||||||| ||  || |||||||||||| ||| ||| || |||||||||| ||| |||||| |||||    
T  37134166 aagtggtaaaccactgaaattaaactcacacacaactgtgaagtttcgggttcgaacccggatcatgacatccgaccttgtaatttcagcatttgccagt 37134067  T
Q  311 taagttaggacttctaga 328  Q
    | |  |||||||||||||    
T  37134066 tgaactaggacttctaga 37134049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 328
Target Start/End: Original strand, 19673929 - 19674056
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    |||||| || |||||||||| |||||||||||||| | || | || |||||||||||| |||||||||| |||||| ||||  | ||||| || |||  |    
T  19673929 gtcttaaatgaagtggtaatccactgaaattaaactcgcacataattgtgaggtcccgggttcgaacccaggtcacaacgttcggccttgcaatttctac 19674028  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    ||||||||||| || || ||||||||||    
T  19674029 atttaccagttgagctaagacttctaga 19674056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 213 - 260
Target Start/End: Complemental strand, 23532165 - 23532118
Alignment:
Q  213 aagtggtaattcactgaaattaaacccacatacaactgtgaggtcccg 260  Q
    ||||||||||||||||||||||||| |||| |||||||||| ||||||    
T  23532165 aagtggtaattcactgaaattaaactcacacacaactgtgaagtcccg 23532118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 328
Target Start/End: Original strand, 32441125 - 32441211
Alignment:
Q  244 acaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggcatttaccagttaagttaggacttctaga 328  Q
    ||||||||||||||||| |||||||||| ||||| || ||||| ||||| || |||| ||||| |||||| || |||||||||||||    
T  32441125 acaactgtgaggtcccgggttcgaacccgggtcatgatgtctggccttgcaatttcgacatttgccagttgagctaggacttctaga 32441211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 203 - 273
Target Start/End: Complemental strand, 50033510 - 50033440
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccgg 273  Q
    |||||| || ||||||||||||| |||||||||||  ||| |||||||||| ||| | |||||||||||||    
T  50033510 gtcttatatgaagtggtaattcattgaaattaaacttacacacaactgtgatgtctcatgttcgaacccgg 50033440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 203 - 256
Target Start/End: Complemental strand, 31015110 - 31015057
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggt 256  Q
    ||||||||| |||||||||  |||||||||||||| |||| |||||||||||||    
T  31015110 gtcttagatgaagtggtaaagcactgaaattaaactcacacacaactgtgaggt 31015057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 203 - 290
Target Start/End: Complemental strand, 51287730 - 51287641
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaatt-aaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgacctt 290  Q
    ||||||||| || |||||||||||||||||| |||| |||| |||||||||||||  || |||  ||||| | |||||||||||||||||    
T  51287730 gtcttagatgaaatggtaattcactgaaattaaaactcacacacaactgtgaggtttcgggtttaaacccagatcacgacgtctgacctt 51287641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 203 - 256
Target Start/End: Original strand, 52171990 - 52172043
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggt 256  Q
    |||||| ||||||||||||| |||||||||||||| |||| |||| ||||||||    
T  52171990 gtcttaaataaagtggtaatccactgaaattaaactcacacacaattgtgaggt 52172043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 271
Target Start/End: Complemental strand, 33770696 - 33770628
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc 271  Q
    ||||||||| ||| |||||  |||||||||||||| |||| |||||| ||| |||||| ||||||||||    
T  33770696 gtcttagatgaagcggtaaaccactgaaattaaactcacacacaactatgaagtcccgggttcgaaccc 33770628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 227 - 328
Target Start/End: Complemental strand, 12767191 - 12767088
Alignment:
Q  227 tgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggcatttaccagttaagttaggacttc 324  Q
    ||||||||||| |||| |||||||||||||  ||  ||||||||| | ||| |||||| || |||  || ||||||||||||||||| || |||||||||    
T  12767191 tgaaattaaactcacacacaactgtgaggtttcggattcgaacccagatcatgacgtccgatcttacaatttcggcatttaccagttgagctaggacttc 12767092  T
Q  325 taga 328  Q
    ||||    
T  12767091 taga 12767088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 296
Target Start/End: Complemental strand, 32778238 - 32778159
Alignment:
Q  216 tggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccgg-tcacgacgtctgaccttgtaatt 296  Q
    ||||||| |||| ||| ||||| ||||  ||| ||||||||| ||||||||||||||| |||||||||| ||||||| ||||    
T  32778238 tggtaatccactaaaaataaactcaca--caattgtgaggtctcgtgttcgaacccggatcacgacgtccgaccttgcaatt 32778159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 256
Target Start/End: Complemental strand, 16555435 - 16555382
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggt 256  Q
    ||||||||| ||||||||||||| | ||||||||  |||| |||||||||||||    
T  16555435 gtcttagatgaagtggtaattcattaaaattaaattcacacacaactgtgaggt 16555382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 283
Target Start/End: Complemental strand, 19814229 - 19814152
Alignment:
Q  207 tagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtc 283  Q
    ||||| ||||||||||  ||||||||||||| |||| | || |||||||||||  ||| |||||| ||||||||||||    
T  19814229 tagatgaagtggtaatcaactgaaattaaactcacacataattgtgaggtcccaggtttgaacccaggtcacgacgtc 19814152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 328
Target Start/End: Original strand, 2864751 - 2864875
Alignment:
Q  206 ttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccgg-tcacgacgtctgaccttgtaattc-ggcatt 303  Q
    |||||| |||||||||  |  ||||||||| | |||| |||||| |||||| |   |||||||||||| ||||||||||   ||||| ||||  ||||||    
T  2864751 ttagatgaagtggtaaacctttgaaattaagctcacacacaactctgaggttctaggttcgaacccgggtcacgacgtcccgccttgcaatttaggcatt 2864850  T
Q  304 taccagttaagttaggacttctaga 328  Q
    | |||||| ||||||||||||||||    
T  2864851 tgccagttgagttaggacttctaga 2864875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 271
Target Start/End: Complemental strand, 37620745 - 37620677
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc 271  Q
    ||||| ||| |||||||||| |||||||||||||| |||| | | ||||||  ||||| ||||||||||    
T  37620745 gtctttgatgaagtggtaatccactgaaattaaactcacacaaacctgtgatatcccgggttcgaaccc 37620677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 203 - 328
Target Start/End: Original strand, 7824454 - 7824581
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| |||||||| ||||| |||| ||||||||||||||||| |||||||||| ||||| |||||| | ||||| || ||||||    
T  7824454 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggc 7824553  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| || |||||||||||||    
T  7824554 atttgccagttgagctaggacttctaga 7824581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 203 - 328
Target Start/End: Original strand, 29689482 - 29689609
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| |||||||| ||||| |||| ||||||||||||||||| |||||||||| ||||| |||||| | ||||| || ||||||    
T  29689482 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggc 29689581  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| || |||||||||||||    
T  29689582 atttgccagttgagctaggacttctaga 29689609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 54158394 - 54158267
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccgg-tcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| |||||||| ||||| |||| ||||||||||||||||| |||||||||||| ||| |||||| | ||||| || ||||||    
T  54158394 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccggatcatgacgtccggccttgcaatttcggc 54158295  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| || |||||||||||||    
T  54158294 atttgccagttgagctaggacttctaga 54158267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 206 - 311
Target Start/End: Original strand, 9349679 - 9349786
Alignment:
Q  206 ttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccgg-tcacgacgtctgaccttgtaa-ttcggcatt 303  Q
    |||||| |||||||||| |||||||| ||||| |||| ||||||||||||||||| |||||||||||| |||||||||| ||||||| || |||||||||    
T  9349679 ttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccggatcacgacgtccgaccttgcaatttcggcatt 9349778  T
Q  304 taccagtt 311  Q
    | ||||||    
T  9349779 tgccagtt 9349786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 203 - 328
Target Start/End: Original strand, 42392805 - 42392932
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccgg-tcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||  |||||||||||||| |||| |||| |||||||||||| |||||| ||||| ||| |||||| ||||||| || ||||||    
T  42392805 gtcttagatgaagtggtaaaccactgaaattaaactcacacacaattgtgaggtcccgggttcgagcccggatcatgacgtccgaccttgcaatttcggc 42392904  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| || |||||||||||||    
T  42392905 atttgccagttgagctaggacttctaga 42392932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 203 - 328
Target Start/End: Original strand, 43247650 - 43247777
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| |||||||| ||||| |||| ||||||||||||||||| |||||||||| |||||| ||||| | ||||| || || |||    
T  43247650 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccaggtcacaacgtccggccttgcaattttggc 43247749  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| || |||||||||||||    
T  43247750 atttgccagttgagctaggacttctaga 43247777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 203 - 328
Target Start/End: Original strand, 51665925 - 51666052
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaatt-cggc 300  Q
    ||||||||| |||||||||| |||||||| ||||| |||| |||||||| |||||||| |||||||||| ||||| |||||| | ||||| |||| ||||    
T  51665925 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtaaggtcccgggttcgaacccaggtcatgacgtccggccttgcaatttcggc 51666024  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| || |||||||||||||    
T  51666025 atttgccagttgagctaggacttctaga 51666052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 203 - 328
Target Start/End: Original strand, 54151681 - 54151808
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| |||||||| ||||| || | ||||||||||||||||| |||||||||| ||||| |||||| | ||||| || ||||||    
T  54151681 gtcttagatgaagtggtaatccactgaaaataaactcatacacaactgtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggc 54151780  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| || |||||||||||||    
T  54151781 atttgccagttgagctaggacttctaga 54151808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 213 - 328
Target Start/End: Original strand, 55018044 - 55018161
Alignment:
Q  213 aagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggcatttaccagt 310  Q
    |||||||||| |||||||| ||||| |||| ||||||||||||||||| |||||||||| |||||||||||| | ||||| || || | ||||| |||||    
T  55018044 aagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcacgacgtccggccttgcaattttgacatttgccagt 55018143  T
Q  311 taagttaggacttctaga 328  Q
    | ||||||||||||||||    
T  55018144 tgagttaggacttctaga 55018161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 4601553 - 4601426
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| || ||||||| |||||||| ||||| |||| ||||||||||||| ||| |||||||||| ||||| |||||| | ||||| || ||||||    
T  4601553 gtcttagatgaactggtaatccactgaaaataaactcacacacaactgtgaggttccgggttcgaacccgggtcatgacgtccggccttgcaatttcggc 4601454  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| || |||||||||||||    
T  4601453 atttgccagttgagctaggacttctaga 4601426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 203 - 296
Target Start/End: Original strand, 475281 - 475374
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccgg-tcacgacgtctgaccttgtaatt 296  Q
    ||||||||| |||||||||||||||||| |||||| |||| ||||||||||||| ||| |||||||||||| ||| |||||| ||||||| ||||    
T  475281 gtcttagatgaagtggtaattcactgaa-ttaaactcacacacaactgtgaggttccgagttcgaacccggatcatgacgtccgaccttgcaatt 475374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 203 - 311
Target Start/End: Original strand, 36228994 - 36229104
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccgg-tcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| || ||||| ||||| |||| ||||||||||||||||| |||||||||||| ||| |||||| | ||||| || ||||||    
T  36228994 gtcttagatgaagtggtaatccattgaaaataaactcacacacaactgtgaggtcccgggttcgaacccggatcatgacgtccggccttgcaatttcggc 36229093  T
Q  301 atttaccagtt 311  Q
    |||| ||||||    
T  36229094 atttgccagtt 36229104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 203 - 311
Target Start/End: Original strand, 3112995 - 3113105
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaac-ccggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| |||||||| ||||| |||| ||||||||||| ||||| |||||||| | ||| |||||||| | ||||| || ||||||    
T  3112995 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgagatcccgggttcgaactcgggttacgacgtccggccttgcaatttcggc 3113094  T
Q  301 atttaccagtt 311  Q
    |||| ||||||    
T  3113095 atttgccagtt 3113105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 204 - 296
Target Start/End: Original strand, 38257304 - 38257397
Alignment:
Q  204 tcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaatt 296  Q
    |||||||| |||||||||| | |||||||||||| |||| |||| |||||||| | | |||||||||| |||||||||||| ||||||| ||||    
T  38257304 tcttagatgaagtggtaatccgctgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtcacgacgtccgaccttgcaatt 38257397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 204 - 328
Target Start/End: Original strand, 40756728 - 40756855
Alignment:
Q  204 tcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccgg-tcacga-cgtctgaccttgtaa-ttcggc 300  Q
    |||||||| |||||||||   ||||||||||||| ||||  ||||||||||||| || ||||||| |||| ||| || |||||||||||| || || |||    
T  40756728 tcttagatgaagtggtaaactactgaaattaaactcacacgcaactgtgaggtctcgggttcgaatccggatcatgatcgtctgaccttgcaattttggc 40756827  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    ||||  ||||| ||||||||||||||||    
T  40756828 atttttcagttgagttaggacttctaga 40756855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 43775351 - 43775224
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaac-ccggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| |||||||||||||| || ||||||||||||| | |||  ||||||| |  ||||| ||||| ||||||  || ||||||    
T  43775351 gtcttagatgaagtggtaatccactgaaattaaactcaaatacaactgtgagattccggattcgaacgcaagtcacaacgtccgaccttacaatttcggc 43775252  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| |||||| |||| ||||    
T  43775251 atttgccagttgagttagaacttttaga 43775224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 50729652 - 50729525
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaa-cccggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| ||||||||||  | ||||||||||| |||||| ||||| |||||| | |||||||| || | |||||||||||||||||  || ||||||    
T  50729652 gtcttagatgaagtggtaatctattgaaattaaactcacataaaactgcgaggtctcatgttcgaatccagatcacgacgtctgaccttacaatttcggc 50729553  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    ||||  ||||| || ||| |||||||||    
T  50729552 atttgtcagttgagctagaacttctaga 50729525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 203 - 328
Target Start/End: Original strand, 50783197 - 50783324
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaa-cccggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| ||||||||||  | ||||||||||| |||||| ||||| |||||| | |||||||| || | |||||||||||||||||  || ||||||    
T  50783197 gtcttagatgaagtggtaatctattgaaattaaactcacataaaactgcgaggtctcatgttcgaatccagatcacgacgtctgaccttacaatttcggc 50783296  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    ||||  ||||| || ||| |||||||||    
T  50783297 atttgtcagttgagctagaacttctaga 50783324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 228 - 328
Target Start/End: Original strand, 35461504 - 35461606
Alignment:
Q  228 gaaattaaacccacatacaactgtgaggtcccgtgttcgaacccgg-tcacgacgtctgaccttgtaa-ttcggcatttaccagttaagttaggacttct 325  Q
    |||| ||||| |||| ||||||||||||| ||| |||||||||||| |||| ||||| ||||||| || |||||||||| |||||| || ||| ||||||    
T  35461504 gaaaataaactcacacacaactgtgaggttccgggttcgaacccggatcacaacgtccgaccttgcaatttcggcatttgccagttgagctagaacttct 35461603  T
Q  326 aga 328  Q
    |||    
T  35461604 aga 35461606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 28844633 - 28844505
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaat-taaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcgg 299  Q
    ||||||||| |||||||||| ||||||||  ||||| |||| ||||||||||||| ||  |||||||||| |||||| ||||| | ||||| || |||||    
T  28844633 gtcttagatgaagtggtaatccactgaaaaataaactcacacacaactgtgaggttccaggttcgaacccgggtcacaacgtccggccttgcaatttcgg 28844534  T
Q  300 catttaccagttaagttaggacttctaga 328  Q
    |||||  ||||| || ||| |||||||||    
T  28844533 catttgtcagttgagctagaacttctaga 28844505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 328
Target Start/End: Original strand, 32001424 - 32001551
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccgg-tcacgacgtctgaccttgtaa-ttcggc 300  Q
    |||||| || ||||||||| ||||||||| ||||| |||| ||||||||||| || || ||||||||| || ||| || ||  | ||||  || ||||||    
T  32001424 gtcttatatgaagtggtaaatcactgaaaataaactcacacacaactgtgagatctcgagttcgaacctggttcaagatgttcggccttacaatttcggc 32001523  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    ||||||||||| || |||||||||||||    
T  32001524 atttaccagttgaggtaggacttctaga 32001551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 33334736 - 33334609
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaac-ccggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    |||||| || ||||| ||||  ||||||||||||| |||| |||||||||||||||||  ||||||| | |||||| ||||| | | ||| || ||||||    
T  33334736 gtcttatatgaagtgataatctactgaaattaaactcacacacaactgtgaggtcccggattcgaactcaggtcacaacgtccggctttgcaatttcggc 33334637  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| | |||| || |||||||||||||    
T  33334636 atttgcaagttgagctaggacttctaga 33334609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 52500966 - 52500839
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccgg-tcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| ||||||||||  ||||||| ||||| |||| |||||||||||||  |  |||||||||||| ||| |||||| | ||||  || |||| |    
T  52500966 gtcttagatgaagtggtaatctactgaaaataaactcacacacaactgtgaggtttcaggttcgaacccggatcatgacgtccggccttacaatttcgac 52500867  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| || |||||||||||||    
T  52500866 atttgccagttgagctaggacttctaga 52500839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 28458790 - 28458664
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccggtcacgacgtctgaccttgtaa-ttcggca 301  Q
    ||||||||| ||||||||||| | |||| ||||||  |||  |||||||||||| | | |||| |||| | ||||||| |||| ||||| || |||| ||    
T  28458790 gtcttagatgaagtggtaatttattgaagttaaacttacacgcaactgtgaggttctgggttcaaaccggatcacgacatctggccttgcaatttcgaca 28458691  T
Q  302 tttaccagttaagttaggacttctaga 328  Q
    |||  ||||| ||||||||||||||||    
T  28458690 tttgtcagttgagttaggacttctaga 28458664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 206 - 273
Target Start/End: Complemental strand, 7958694 - 7958627
Alignment:
Q  206 ttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccgg 273  Q
    |||||| |||||||||| |||| ||| |||||  ||| | ||||||||||||||| ||||||||||||    
T  7958694 ttagatgaagtggtaatccactaaaaataaacttacacataactgtgaggtcccgggttcgaacccgg 7958627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 203 - 328
Target Start/End: Original strand, 47635005 - 47635132
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaatt-cggc 300  Q
    ||||||||| ||||||||||  |||||||||||||  ||| | ||||| ||||||| |  ||||||||| |||||| | ||| ||||||| |||| |       
T  47635005 gtcttagatgaagtggtaatcaactgaaattaaacttacacataactgcgaggtcctggattcgaacccaggtcacaatgtccgaccttgcaattccaaa 47635104  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    ||||||||||| | ||||||||||||||    
T  47635105 atttaccagttgaattaggacttctaga 47635132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 253
Target Start/End: Complemental strand, 27230794 - 27230744
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtga 253  Q
    |||| |||| ||||||||||||||||||||||||  |||| ||||||||||    
T  27230794 gtctgagatgaagtggtaattcactgaaattaaattcacacacaactgtga 27230744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 258
Target Start/End: Original strand, 448885 - 448930
Alignment:
Q  213 aagtggtaattcactgaaattaaacccacatacaactgtgaggtcc 258  Q
    |||||||||| |||| ||||||||| |||| |||||||||||||||    
T  448885 aagtggtaatccactaaaattaaactcacaaacaactgtgaggtcc 448930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 328
Target Start/End: Complemental strand, 1778977 - 1778852
Alignment:
Q  205 cttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggcat 302  Q
    ||||||| |||||||||| || ||||| ||||  || | |||| |||||||| ||| |||||||||| |||||| | ||| | ||||| || ||||||||    
T  1778977 cttagatgaagtggtaatccattgaaaataaattcaaacacaattgtgaggttccgggttcgaacccgggtcacaatgtccggccttgcaatttcggcat 1778878  T
Q  303 ttaccagttaagttaggacttctaga 328  Q
    ||  ||||| || |||||||||||||    
T  1778877 ttgtcagttgagctaggacttctaga 1778852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 203 - 328
Target Start/End: Original strand, 13951 - 14078
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccgg-tcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| |||||||| ||||| |||| ||||||||||||||||| |||||||||||| |||| ||||| | ||||| || |||||     
T  13951 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccggatcacaacgtccggccttgcaatttcggt 14050  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| || |||||||||||||    
T  14051 atttgccagttgagctaggacttctaga 14078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 203 - 328
Target Start/End: Original strand, 19631 - 19758
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccgg-tcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| |||||||| ||||| |||| ||||||||||||||||| |||||||||||| |||| ||||| | ||||| || |||||     
T  19631 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccggatcacaacgtccggccttgcaatttcggt 19730  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| || |||||||||||||    
T  19731 atttgccagttgagctaggacttctaga 19758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 203 - 328
Target Start/End: Original strand, 9973 - 10100
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||| |||||||| ||||| |||| |||||| |||||||||| |||||||||| ||| |||||||| | ||||| || ||||||    
T  9973 gtcttagatgaagtggtaatccactgaaaataaactcacacacaactatgaggtcccgggttcgaacccgggttacgacgtccggccttgcaatttcggc 10072  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| || |||||||||||||    
T  10073 atttgccagttgagctaggacttctaga 10100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 114380 - 114253
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccgg-tcacgacgtctgaccttgtaa-ttcggc 300  Q
    ||||||||| |||||||||  |||||||| ||||| |||| |||| |||||||||||| |||||||||||| ||| |||||| | ||||  || ||||||    
T  114380 gtcttagatgaagtggtaaaccactgaaactaaactcacacacaattgtgaggtcccgggttcgaacccggatcatgacgtccggccttacaatttcggc 114281  T
Q  301 atttaccagttaagttaggacttctaga 328  Q
    |||| |||||| || |||||||||||||    
T  114280 atttgccagttgagctaggacttctaga 114253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 203 - 325
Target Start/End: Complemental strand, 34947 - 34822
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaatt-aaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtctgaccttgtaa-ttcgg 299  Q
    ||||||||| |||||||||| |||||||||| |||| |||||||||||| ||||||| |  |||||||||  ||||||||||| | ||||| || |||||    
T  34947 gtcttagatgaagtggtaatccactgaaattaaaactcacatacaactgcgaggtcctggattcgaacccatgtcacgacgtccggccttgcaatttcgg 34848  T
Q  300 catttaccagttaagttaggacttct 325  Q
    ||||| |||||| || ||||||||||    
T  34847 catttgccagttgagctaggacttct 34822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 203 - 283
Target Start/End: Complemental strand, 22291 - 22210
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaaccc-ggtcacgacgtc 283  Q
    ||||||||| |||||||||| |||||||||||||| ||||  |||||||||||||||| | |||||||| ||||||||||||    
T  22291 gtcttagatgaagtggtaatccactgaaattaaactcacacgcaactgtgaggtcccgggctcgaacccgggtcacgacgtc 22210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 203 - 272
Target Start/End: Original strand, 8943 - 9012
Alignment:
Q  203 gtcttagataaagtggtaattcactgaaattaaacccacatacaactgtgaggtcccgtgttcgaacccg 272  Q
    ||||||||| ||||||||| ||||||||||||||| |||| |||||||||||||||   |||||||||||    
T  8943 gtcttagatgaagtggtaaatcactgaaattaaactcacacacaactgtgaggtcctaggttcgaacccg 9012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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