View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10718_low_6 (Length: 407)
Name: NF10718_low_6
Description: NF10718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10718_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 18 - 386
Target Start/End: Complemental strand, 51037387 - 51037019
Alignment:
| Q |
18 |
tagagaataattatatttattgattttgagcgaaggtgatcaaggatggctgcctgtattgattttgagcttgaaggaaagcgataagcagacaagaaga |
117 |
Q |
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| T |
51037387 |
tagagaataattatatttattgattttgagcgaaggtgatcaaggatggctgcctgtattgattttgagcttgaaggaaagcgataagcagacaagaaga |
51037288 |
T |
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| Q |
118 |
cctgcagttgttttccttcacagtacaaattcgcataaagaatctctgcgtccattgcttgaggttattataccgcattttcactgcttcactcattgct |
217 |
Q |
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| T |
51037287 |
cctgcagttgttttccttcacagtacaaattcgcataaagaatctctgcgtccattgcttgaggttattataccgcattttcactgcttcactcattgct |
51037188 |
T |
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| Q |
218 |
cattttgttcaactcctatgaaataagatttgtgattgtttaattattatattgtggatttaatttgtctttggtttctatttttgtgcttcttgtttca |
317 |
Q |
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| T |
51037187 |
cattttgttcaactcctatgaaataagatttgtgattgtttaattattatattgtggatttaatttgtctttggtttctatttttgtgcttcttgtttca |
51037088 |
T |
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| Q |
318 |
ggcatatgcttcgcggggatatatagcaatttcagttgattctcgttaccatggtgaacgtgcgcagga |
386 |
Q |
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| T |
51037087 |
ggcatatgcttcgcggggatatatagcaatttcagttgattctcgttaccatggtgaacgtgcgaagga |
51037019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 49 - 380
Target Start/End: Complemental strand, 51045256 - 51044922
Alignment:
| Q |
49 |
gaaggtgatcaaggatggctgcctgtattgattttgagcttgaaggaaagcgataagcagacaagaagacctgcagttgttttccttcacagtacaaatt |
148 |
Q |
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| T |
51045256 |
gaaggagatcaaggacggttgcctgtgttgattttgagcttgaaggaaagcgataagcagacaagaagacctgcagttgttttccttcacagtacaaaca |
51045157 |
T |
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| Q |
149 |
cgcataaagaatctctgcgtccattgcttgaggttattataccgcattttcactgcttcactcattgctcattttgttcaactcctatgaaataagattt |
248 |
Q |
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| T |
51045156 |
agtataaagaatatctgcgtccgttgcttgaggttgct-tactacattttctcagcttcaatcatcactcattttgttctactcctatgaaatatgattt |
51045058 |
T |
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| Q |
249 |
---gtgattgttta-attattat-attgtggatttaatttgtctttggtttctatttttgtgcttcttgtttcaggcatatgcttcgcggggatatatag |
343 |
Q |
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| T |
51045057 |
atcatgattcattagcttataataatcgtcaattt-ttttggctttggtttccatttttggtcttcgtgtttcaggcatatgcttcgcgaggatatataa |
51044959 |
T |
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| Q |
344 |
caatttcagttgattctcgttaccatggtgaacgtgc |
380 |
Q |
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| T |
51044958 |
caatttcggttgattctcgttaccatggtgaacgtgc |
51044922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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