View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10718_low_7 (Length: 385)

Name: NF10718_low_7
Description: NF10718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10718_low_7
NF10718_low_7
[»] chr5 (5 HSPs)
chr5 (92-369)||(33036864-33037141)
chr5 (11-60)||(33037767-33037816)
chr5 (11-56)||(2530961-2531006)
chr5 (19-56)||(34425894-34425931)
chr5 (12-56)||(40794392-40794436)
[»] scaffold0007 (1 HSPs)
scaffold0007 (11-56)||(230926-230971)
[»] chr8 (8 HSPs)
chr8 (11-60)||(7944589-7944638)
chr8 (11-56)||(5942687-5942732)
chr8 (12-53)||(8102906-8102947)
chr8 (11-60)||(11290171-11290220)
chr8 (11-56)||(39332472-39332517)
chr8 (17-58)||(5973180-5973221)
chr8 (11-60)||(34789929-34789978)
chr8 (12-56)||(41677242-41677286)
[»] chr1 (4 HSPs)
chr1 (11-60)||(45758492-45758541)
chr1 (11-60)||(5533310-5533359)
chr1 (11-60)||(43235836-43235885)
chr1 (11-56)||(38547102-38547147)
[»] chr7 (5 HSPs)
chr7 (12-56)||(7398442-7398486)
chr7 (11-51)||(23020549-23020589)
chr7 (11-54)||(36891571-36891614)
chr7 (11-60)||(17800287-17800336)
chr7 (12-56)||(27237490-27237534)
[»] chr4 (6 HSPs)
chr4 (17-56)||(15735091-15735130)
chr4 (11-57)||(37744976-37745022)
chr4 (11-56)||(4167957-4168002)
chr4 (11-56)||(40217228-40217273)
chr4 (11-56)||(52468282-52468327)
chr4 (16-56)||(27112026-27112066)
[»] chr2 (2 HSPs)
chr2 (11-56)||(38400788-38400833)
chr2 (11-58)||(16096996-16097043)
[»] chr3 (1 HSPs)
chr3 (11-57)||(789929-789975)
[»] chr6 (3 HSPs)
chr6 (11-52)||(20611788-20611829)
chr6 (11-56)||(21183742-21183787)
chr6 (16-56)||(2477656-2477696)


Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 92 - 369
Target Start/End: Complemental strand, 33037141 - 33036864
Alignment:
Q  92 ttgttttgtgggcttacatataaaaatgacttattattgagtgtactgaagctatcacttcccaacatatatgttttcgtgtaaattgaaattattgatt 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  33037141 ttgttttgtgggcttacatataaaaatgacttattattgagtgtactgaagctatcacttcccaacatatatgctttcgtgtaaattcaaattattgatt 33037042  T
Q  192 agtaacacagttgaagttgagtttgtttatcatttgaatcactttaatgggtagccacataataattgtgcacaaatcctgttctgacaaccatgtgtga 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  33037041 agtaacacagttgaagttgagtttgtttatcatttgaatcactttaatgggtagccacataataattgtgcacaagtcctgttctgacaaccatgtgtga 33036942  T
Q  292 gtaaaacttgtaattagatttttatttcaatacctaaagcttcaattagtgacaaattttacgtgacaacttgagttt 369  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  33036941 gtaaaacttgtaattagatttttatttcaatacctaaagcttcaattagtgacaaattttacgtgacaatttgagttt 33036864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 33037816 - 33037767
Alignment:
Q  11 caaaggtgaaaatcattaccatatacatgaggaacttcaaaccaccatcc 60  Q
    |||||||||||| ||||||| |||||||||||||| ||||||||||||||    
T  33037816 caaaggtgaaaaccattaccgtatacatgaggaacctcaaaccaccatcc 33037767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 2530961 - 2531006
Alignment:
Q  11 caaaggtgaaaatcattaccatatacatgaggaacttcaaaccacc 56  Q
    ||||||||||||||| |||  |||||||||||||| ||||||||||    
T  2530961 caaaggtgaaaatcactactgtatacatgaggaacctcaaaccacc 2531006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 34425931 - 34425894
Alignment:
Q  19 aaaatcattaccatatacatgaggaacttcaaaccacc 56  Q
    |||||||||||| |||||||||||||| ||||||||||    
T  34425931 aaaatcattaccgtatacatgaggaacctcaaaccacc 34425894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 40794392 - 40794436
Alignment:
Q  12 aaaggtgaaaatcattaccatatacatgaggaacttcaaaccacc 56  Q
    |||||||||||||| |||| |||||||||| ||| ||||||||||    
T  40794392 aaaggtgaaaatcactaccgtatacatgagaaacctcaaaccacc 40794436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 230926 - 230971
Alignment:
Q  11 caaaggtgaaaatcattaccatatacatgaggaacttcaaaccacc 56  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||    
T  230926 caaaggtgaaaatcactaccttatacatgaggaacttcaaaccacc 230971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 7944589 - 7944638
Alignment:
Q  11 caaaggtgaaaatcattaccatatacatgaggaacttcaaaccaccatcc 60  Q
    ||||||||||||||| |||| |||||||||||||| ||||||||||||||    
T  7944589 caaaggtgaaaatcactaccgtatacatgaggaacctcaaaccaccatcc 7944638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 5942732 - 5942687
Alignment:
Q  11 caaaggtgaaaatcattaccatatacatgaggaacttcaaaccacc 56  Q
    ||||||||||||||| |||| |||||||||||||| ||||||||||    
T  5942732 caaaggtgaaaatcactaccgtatacatgaggaacctcaaaccacc 5942687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 8102947 - 8102906
Alignment:
Q  12 aaaggtgaaaatcattaccatatacatgaggaacttcaaacc 53  Q
    ||||||||||||||||||| |||||||||||||| |||||||    
T  8102947 aaaggtgaaaatcattaccgtatacatgaggaacctcaaacc 8102906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 11290220 - 11290171
Alignment:
Q  11 caaaggtgaaaatcattaccatatacatgaggaacttcaaaccaccatcc 60  Q
    ||||||||||||||| |||| |||||||||| ||| ||||||||||||||    
T  11290220 caaaggtgaaaatcactaccgtatacatgagcaacctcaaaccaccatcc 11290171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 39332472 - 39332517
Alignment:
Q  11 caaaggtgaaaatcattaccatatacatgaggaacttcaaaccacc 56  Q
    ||||||||||||||| |||| |||||||||||||| ||||||||||    
T  39332472 caaaggtgaaaatcactaccgtatacatgaggaacctcaaaccacc 39332517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 5973180 - 5973221
Alignment:
Q  17 tgaaaatcattaccatatacatgaggaacttcaaaccaccat 58  Q
    |||||||||||||| |||||| ||||||| ||||||||||||    
T  5973180 tgaaaatcattaccgtatacacgaggaacctcaaaccaccat 5973221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 34789929 - 34789978
Alignment:
Q  11 caaaggtgaaaatcattaccatatacatgaggaacttcaaaccaccatcc 60  Q
    ||||||||||||||| |||| |||||||||| ||  ||||||||||||||    
T  34789929 caaaggtgaaaatcactaccgtatacatgagaaatatcaaaccaccatcc 34789978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 41677242 - 41677286
Alignment:
Q  12 aaaggtgaaaatcattaccatatacatgaggaacttcaaaccacc 56  Q
    |||||||||||||| |||  |||||||||||||| ||||||||||    
T  41677242 aaaggtgaaaatcactactgtatacatgaggaacctcaaaccacc 41677286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 45758541 - 45758492
Alignment:
Q  11 caaaggtgaaaatcattaccatatacatgaggaacttcaaaccaccatcc 60  Q
    ||||||||||||||| |||| |||||||||||||| ||||||||||||||    
T  45758541 caaaggtgaaaatcactaccgtatacatgaggaacctcaaaccaccatcc 45758492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 5533359 - 5533310
Alignment:
Q  11 caaaggtgaaaatcattaccatatacatgaggaacttcaaaccaccatcc 60  Q
    ||||||||||||||| |||| |||||||||||||  ||||||||||||||    
T  5533359 caaaggtgaaaatcactaccgtatacatgaggaaactcaaaccaccatcc 5533310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 43235836 - 43235885
Alignment:
Q  11 caaaggtgaaaatcattaccatatacatgaggaacttcaaaccaccatcc 60  Q
    ||||||||||||||| || | |||||||||||||| ||||||||||||||    
T  43235836 caaaggtgaaaatcactatcgtatacatgaggaacctcaaaccaccatcc 43235885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 38547102 - 38547147
Alignment:
Q  11 caaaggtgaaaatcattaccatatacatgaggaacttcaaaccacc 56  Q
    |||| |||||||||| || |||||||||||||||| ||||||||||    
T  38547102 caaatgtgaaaatcactatcatatacatgaggaacctcaaaccacc 38547147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 7398486 - 7398442
Alignment:
Q  12 aaaggtgaaaatcattaccatatacatgaggaacttcaaaccacc 56  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||    
T  7398486 aaaggtgaaaatcactaccatatacatgaggaacctcaaaccacc 7398442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 23020549 - 23020589
Alignment:
Q  11 caaaggtgaaaatcattaccatatacatgaggaacttcaaa 51  Q
    ||||||||||||||| |||| ||||||||||||||||||||    
T  23020549 caaaggtgaaaatcactaccgtatacatgaggaacttcaaa 23020589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 36891614 - 36891571
Alignment:
Q  11 caaaggtgaaaatcattaccatatacatgaggaacttcaaacca 54  Q
    ||||||||||||||| |||| |||||||||||||| ||||||||    
T  36891614 caaaggtgaaaatcactaccgtatacatgaggaacctcaaacca 36891571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 17800287 - 17800336
Alignment:
Q  11 caaaggtgaaaatcattaccatatacatgaggaacttcaaaccaccatcc 60  Q
    |||| |||||||||| |||| ||| ||||||||| |||||||||||||||    
T  17800287 caaaagtgaaaatcactaccgtatgcatgaggaatttcaaaccaccatcc 17800336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 27237490 - 27237534
Alignment:
Q  12 aaaggtgaaaatcattaccatatacatgaggaacttcaaaccacc 56  Q
    |||||||||||||| || | |||||||||||||| ||||||||||    
T  27237490 aaaggtgaaaatcactatcgtatacatgaggaacctcaaaccacc 27237534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 15735130 - 15735091
Alignment:
Q  17 tgaaaatcattaccatatacatgaggaacttcaaaccacc 56  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  15735130 tgaaaatcattaccgtatacatgaggaacttcaaaccacc 15735091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 37744976 - 37745022
Alignment:
Q  11 caaaggtgaaaatcattaccatatacatgaggaacttcaaaccacca 57  Q
    ||||||||||||||| |||| ||||| |||||||| |||||||||||    
T  37744976 caaaggtgaaaatcactaccgtatacttgaggaacctcaaaccacca 37745022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 4167957 - 4168002
Alignment:
Q  11 caaaggtgaaaatcattaccatatacatgaggaacttcaaaccacc 56  Q
    ||||||||||||||| |||| |||||||||||||| ||||| ||||    
T  4167957 caaaggtgaaaatcactaccttatacatgaggaacctcaaatcacc 4168002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 40217273 - 40217228
Alignment:
Q  11 caaaggtgaaaatcattaccatatacatgaggaacttcaaaccacc 56  Q
    ||||| |||||||||||| |||||||||||| ||| ||||||||||    
T  40217273 caaagatgaaaatcattagcatatacatgagtaacctcaaaccacc 40217228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 52468327 - 52468282
Alignment:
Q  11 caaaggtgaaaatcattaccatatacatgaggaacttcaaaccacc 56  Q
    ||||||||||||||| |||| ||| |||||||||| ||||||||||    
T  52468327 caaaggtgaaaatcactaccgtatgcatgaggaacctcaaaccacc 52468282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 27112066 - 27112026
Alignment:
Q  16 gtgaaaatcattaccatatacatgaggaacttcaaaccacc 56  Q
    |||||||||| |||| |||||||||||||| ||||||||||    
T  27112066 gtgaaaatcactaccgtatacatgaggaacctcaaaccacc 27112026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 38400833 - 38400788
Alignment:
Q  11 caaaggtgaaaatcattaccatatacatgaggaacttcaaaccacc 56  Q
    ||||||||||||||| |||| |||||||||||||| ||||||||||    
T  38400833 caaaggtgaaaatcactaccgtatacatgaggaacctcaaaccacc 38400788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 16097043 - 16096996
Alignment:
Q  11 caaaggtgaaaatcattaccatatacatgaggaacttcaaaccaccat 58  Q
    ||||||||||||| | |||| |||||||||||||| ||||||||||||    
T  16097043 caaaggtgaaaattactaccttatacatgaggaacctcaaaccaccat 16096996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 789975 - 789929
Alignment:
Q  11 caaaggtgaaaatcattaccatatacatgaggaacttcaaaccacca 57  Q
    ||||||| |||||||  |||||||||||||||||| |||||||||||    
T  789975 caaaggtaaaaatcaccaccatatacatgaggaacctcaaaccacca 789929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 20611829 - 20611788
Alignment:
Q  11 caaaggtgaaaatcattaccatatacatgaggaacttcaaac 52  Q
    ||||||||||||||| |||| |||||||||||||| ||||||    
T  20611829 caaaggtgaaaatcactaccgtatacatgaggaacctcaaac 20611788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 21183742 - 21183787
Alignment:
Q  11 caaaggtgaaaatcattaccatatacatgaggaacttcaaaccacc 56  Q
    ||||| ||||||||| |||| |||||||||||||| ||||||||||    
T  21183742 caaagttgaaaatcactaccgtatacatgaggaacctcaaaccacc 21183787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 2477656 - 2477696
Alignment:
Q  16 gtgaaaatcattaccatatacatgaggaacttcaaaccacc 56  Q
    |||||||||| |||| |||||||||||||| ||||||||||    
T  2477656 gtgaaaatcactaccgtatacatgaggaacctcaaaccacc 2477696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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