View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10718_low_8 (Length: 337)

Name: NF10718_low_8
Description: NF10718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10718_low_8
NF10718_low_8
[»] chr4 (3 HSPs)
chr4 (16-326)||(34344082-34344394)
chr4 (16-61)||(18912956-18913001)
chr4 (200-269)||(18913128-18913197)
[»] chr6 (1 HSPs)
chr6 (16-319)||(3017805-3018102)
[»] chr5 (1 HSPs)
chr5 (15-326)||(37278434-37278739)
[»] chr7 (2 HSPs)
chr7 (224-326)||(46420229-46420331)
chr7 (24-133)||(46420089-46420196)


Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 16 - 326
Target Start/End: Complemental strand, 34344394 - 34344082
Alignment:
Q  16 gaaacaacccctggcaaattgcaagcgggaaaattgaaattgaaattgagacatgagcacatgggagtggcagagagtacagaccatttgtttacttttt 115  Q
    ||||||||||| |||||||||||||||||||| |||||||| ||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||    
T  34344394 gaaacaaccccgggcaaattgcaagcgggaaagttgaaatttaaattgagacaagagcagatggaagtggcagagagtacagaccatttgtttacttttt 34344295  T
Q  116 cactcctttattacttaannnnnnnnnnnnnattgaaacaaatacccaccacacacgttatctttccttcannnnnnn--ggattcattgatttggtgga 213  Q
    ||||  |||||| |||||             ||||||||||||| |||| |||||||||||||||||||||         ||||||||||||||||||||    
T  34344294 cactattttattgcttaatttttatttttttattgaaacaaatatccacaacacacgttatctttccttcatttttttttggattcattgatttggtgga 34344195  T
Q  214 ccatacaaatacacacatttcaacattttattttatcacttgttatctctccaaagtccaaagaacacaagtccaaaactcataaagcttaccattcttc 313  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34344194 ccatacaaatacacacattagaacattttattttatcacttgttatctctccaaagtccaaagaacacaagtccaaaactcataaagcttaccattcttc 34344095  T
Q  314 cttcttccttctt 326  Q
    |||||||||||||    
T  34344094 cttcttccttctt 34344082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 18912956 - 18913001
Alignment:
Q  16 gaaacaacccctggcaaattgcaagcgggaaaattgaaattgaaat 61  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||    
T  18912956 gaaacaacccctggtaaattgcaagcgggaaaattgaaattcaaat 18913001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 200 - 269
Target Start/End: Original strand, 18913128 - 18913197
Alignment:
Q  200 attgatttggtggaccatacaaatacacacatttcaacattttattttatcacttgttatctctccaaag 269  Q
    ||||| |||||||||| |||||||||||| ||  |||| || | ||||| ||||||||||||||||||||    
T  18913128 attgagttggtggaccttacaaatacacatatcacaaccttatcttttaccacttgttatctctccaaag 18913197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 16 - 319
Target Start/End: Complemental strand, 3018102 - 3017805
Alignment:
Q  16 gaaacaacccctggcaaattgcaagcgggaaaattgaaattgaaattgagacatgagcacatgggagtggcagagagtacagaccatttgtttacttttt 115  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||        ||||||||||||    
T  3018102 gaaacaacccctggcaaattgcaagcgggaaaattgaaacttaaattgagacatgagcacatgggagtggcagagagtac--------tgtttacttttt 3018011  T
Q  116 cactcctttattacttaannnnnnnnnnnnnattgaaacaaatacccaccacacacgttatctttccttcannnnnnng--gattcattgatttggtgga 213  Q
    ||||||||||||||||||             ||||||||||||||||||||||||| ||||||||||||||          |||||||||||||||||||    
T  3018010 cactcctttattacttaatttttatttttttattgaaacaaatacccaccacacacattatctttccttcattttttttttgattcattgatttggtgga 3017911  T
Q  214 ccatacaaatacacacatttcaacattttattttatcacttgttatctctccaaagtccaaagaacacaagtccaaaactcataaagcttaccattcttc 313  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3017910 ccatacaaatacacacattacaacattttattttatcacttgttatctctccaaagtccaaagaacacaagtccaaaactcataaagcttaccattcttc 3017811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 15 - 326
Target Start/End: Original strand, 37278434 - 37278739
Alignment:
Q  15 agaaacaacccctggcaaattgcaagcgggaaaattgaaattgaaattgagacatgagcacatgggagtggcagagagtacagaccatttgtttactttt 114  Q
    |||||||| || |||||| ||  ||||||||||||||||||| |||| |||||| |||||||||||||||||||||||| || |||||||||||||||||    
T  37278434 agaaacaatccttggcaatttataagcgggaaaattgaaatttaaatagagacaagagcacatgggagtggcagagagtgcaaaccatttgtttactttt 37278533  T
Q  115 tcactcctttattacttaannnnnnnnnnnnnattgaaacaaatacccaccacacacg-ttatctttccttcannnnnnnggattcattgatttggtgga 213  Q
    |||||| |||||| ||||              ||||||||||||||  || |||| || ||||||||||||||       | || |||||||||||||||    
T  37278534 tcactcttttattgctta------ttttttttattgaaacaaatacaaacaacacgcggttatctttccttcatttttt-gtatccattgatttggtgga 37278626  T
Q  214 ccatacaaatacacacatttcaacattttattttatcacttgttatctctccaaagtccaaagaacacaagtccaaaactcataaagcttaccattcttc 313  Q
     |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  37278627 tcatacaaatacacacattacaacattttcttttatcacttgttatctctccaaagtccaaagaacacaagtccaaaactcataaagcttgccattcttc 37278726  T
Q  314 cttcttccttctt 326  Q
    ||| |||||||||    
T  37278727 ctttttccttctt 37278739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 99; Significance: 8e-49; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 224 - 326
Target Start/End: Original strand, 46420229 - 46420331
Alignment:
Q  224 acacacatttcaacattttattttatcacttgttatctctccaaagtccaaagaacacaagtccaaaactcataaagcttaccattcttccttcttcctt 323  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46420229 acacacattacaacattttattttatcacttgttatctctccaaagtccaaagaacacaagtccaaaactcataaagcttaccattcttccttcttcctt 46420328  T
Q  324 ctt 326  Q
    |||    
T  46420329 ctt 46420331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 24 - 133
Target Start/End: Original strand, 46420089 - 46420196
Alignment:
Q  24 ccctggcaaattgcaagcgggaaaattgaaattgaaattgagacatgagcacatgggagtggcagagagtacagaccatttgtttactttttcactcctt 123  Q
    |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||    
T  46420089 ccctggcaaattgcaagcggaaaaattgaaatttaaattgagacatgagcacatgggagtggc--agagtacataccatttgtttactttttcactcctt 46420186  T
Q  124 tattacttaa 133  Q
    |||| |||||    
T  46420187 tattgcttaa 46420196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University