View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10718_low_9 (Length: 327)
Name: NF10718_low_9
Description: NF10718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10718_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 11 - 312
Target Start/End: Original strand, 44736069 - 44736370
Alignment:
| Q |
11 |
cagagaacctaggagaggaaaaattggatgatttttccactagctggattttatgcattatataaaatatcttgcacaaatacttaggtgattatcagac |
110 |
Q |
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| T |
44736069 |
cagagaacctaggagaggaaaaattggatgatttttccactagctggattttatgcattatataaaatatcttgcacaaatacttaggtgattatcagac |
44736168 |
T |
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| Q |
111 |
atacactaatgagaaaatacacatttgtaaactggcattcaaaaaagtagtatctcagagaaaatcttaacaaataacatctttgatttcaaaattcaaa |
210 |
Q |
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| T |
44736169 |
atgcactaatgagaaaatacacatttgtaaactggcattcaaaaaagtagtatctcagagaaaatcttaacaaataacatccttgatttcaaaactcaaa |
44736268 |
T |
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| Q |
211 |
cttcaatatagaagtttcaaaatactagtgaacaaggcatttgtgacgcgacaagagttccctctctctgtcactaaaatgataacgacatgtaccagtt |
310 |
Q |
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| T |
44736269 |
cttcaatatagaagtttcaaaatactagtgaacaaggcatttgtgacgcgacaagagttccctctctctgtcactaaaatgataacgacatgtaccagtt |
44736368 |
T |
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| Q |
311 |
at |
312 |
Q |
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|| |
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| T |
44736369 |
at |
44736370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 298
Target Start/End: Complemental strand, 18315549 - 18315492
Alignment:
| Q |
241 |
aacaaggcatttgtgacgcgacaagagttccctctctctgtcactaaaatgataacga |
298 |
Q |
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| T |
18315549 |
aacaaggcatctttgacgcgagaagagttccctttctctgtcactgaaacaataacga |
18315492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 295
Target Start/End: Original strand, 1545533 - 1545591
Alignment:
| Q |
237 |
agtgaacaaggcatttgtgacgcgacaagagttccctctctctgtcactaaaatgataa |
295 |
Q |
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| T |
1545533 |
agtgaacagggcaattttgacgagagaagagttccctctcagtgtcactaaaatgataa |
1545591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 277
Target Start/End: Complemental strand, 45245482 - 45245384
Alignment:
| Q |
179 |
aacaaataacatctttgatttcaaaattcaaacttcaatatagaagtttcaaaatactagtgaacaaggcatttgtgacgcgacaagagttccctctct |
277 |
Q |
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| T |
45245482 |
aacaaaaaacatcttacacttcaaagttcaaacttaagtagagcagtttcagaatgctagcaaacaaggcatccttgacgcgacaagagttcccgctct |
45245384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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