View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10719_high_1 (Length: 546)
Name: NF10719_high_1
Description: NF10719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10719_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 18 - 536
Target Start/End: Complemental strand, 31870153 - 31869639
Alignment:
| Q |
18 |
ccacaaaccttaaagaggattcaaaggtgaccctgcttaatcttggtttttgttttagttaattttgattttagttaaaaggagtttgaagtaaattgat |
117 |
Q |
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| T |
31870153 |
ccacaaaccttaaagaggattcaaaggtgaccctgcttaatcttggtttttgttttagttaattttgattttagttaaaaggagtttgaagtaaattgat |
31870054 |
T |
|
| Q |
118 |
ttgtgctgaaaagtaacttaacaacaaaacaaaattgtgcacggtttagtttatattggctttgtatagttt-gcttgatgttgaaactttaaacatgca |
216 |
Q |
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| T |
31870053 |
ttgtgttgaaaagtaacttaacaacaaaa-----ttgtgcacggtttagtttatattggctttgtatagttttgcttgatgttgaaactttaaacatgca |
31869959 |
T |
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| Q |
217 |
tcggggtaatgtagtgtaacgttttaaattgtggtcgcgccatggtccttgatataacagagaattgcactcaaatgtgaccgatgctatctcaattata |
316 |
Q |
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| T |
31869958 |
tcggggtaatgtagtgtaacgttttaaattgtggtcgcgccatggtccttgatataacagagaattgcactcaaatgcgaccgatgctatctcaattata |
31869859 |
T |
|
| Q |
317 |
gtcacagtaacaacaaaaaccctgatgttgctgcccagatctcagtcacagacttctgtttaaaacctttgcagctgcattacatgatgcaatctaaagg |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
31869858 |
gtcacagtaacaacaaaaaccctgatgttgctgcccagatctcagtcacaaacttctgtttaaaacctttgcagctgcattacatgatgcaatctaaaag |
31869759 |
T |
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| Q |
417 |
tctgctggcaaatgtagtgtaacctttacactgccatttaaaacatcgnnnnnnnttattttttgaagtcgatgtttgtggttgagaattattaacactc |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31869758 |
tctgctggcaaatgtagtgtaacctttacactgccatttaaaacatcgaaaaaaattattttttgaagtcgatgtttgtggttgagaattattaacactc |
31869659 |
T |
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| Q |
517 |
aaatatcttgctggtctgtg |
536 |
Q |
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|||||||||||||||||||| |
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| T |
31869658 |
aaatatcttgctggtctgtg |
31869639 |
T |
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