View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10719_high_3 (Length: 340)
Name: NF10719_high_3
Description: NF10719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10719_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 3644989 - 3645312
Alignment:
| Q |
1 |
cctcccttggttaagattatctgcaatccatgttttacttggacctgttattttattcactgtagacactaataaagagctgaagaaaaatcctaaggat |
100 |
Q |
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| T |
3644989 |
cctcccttggttaagattatctgcaatccatggtttacttggacctgttattttattcactgtagacactaataaagagctgaagaaaaatcctaaggat |
3645088 |
T |
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| Q |
101 |
cttgaactcaagaatagtcccatgctcatagttttcatcccatctggacattctctgagaaaaaagtctagttgtcccatatacatgaaggactctcccg |
200 |
Q |
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| T |
3645089 |
cttgaactcaagaatagtcccatgctcatagttttcatcccatctggacattctctgagaaaaaagtctagttgtcccatatacatgaaagactctcccg |
3645188 |
T |
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| Q |
201 |
atcccacgatgaaaaattgcggtatcaaccagaaaacacttaatggaatctttgccgttggatcattcaccaaaccatgtgattgtgcaaatattaatcg |
300 |
Q |
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| T |
3645189 |
atcccacaatgaaaaattgcggtatcaaccagaaaacacttaatggaatctttgccgttggatcattcaccaaaccatgtgattgtgcaaatattaatcg |
3645288 |
T |
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| Q |
301 |
cttttcttcgacaagagctgctgc |
324 |
Q |
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| T |
3645289 |
cttttcttcgacaagagctgctgc |
3645312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 3655663 - 3655945
Alignment:
| Q |
1 |
cctcccttggttaagattatctgcaatccatgttttacttggacctgttattttattcactgtagacactaataaagagctgaagaaaaatcctaaggat |
100 |
Q |
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||||||||| | ||||||||| |||||||||| |||| ||||||| || | || |||||| || ||||||||| ||||| |||||||| |||| || |
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| T |
3655663 |
cctcccttgatcaagattatccgcaatccatggtttatttggaccggtcacattgttcactagagtcactaataatgagctaaagaaaaaccctattgag |
3655762 |
T |
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| Q |
101 |
cttgaactcaagaatagtcccatgctcatagttttcatcccatctggacattctctgagaaaaaagtctagttgtcccatatacatgaaggactctcccg |
200 |
Q |
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| T |
3655763 |
agtgtgctcaagaacaaccctgtactcatagttttcattcctttaggacattctcttagaaaaaagtctaattgtcccatatacataaaggcctctccag |
3655862 |
T |
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| Q |
201 |
atcccacgatgaaaaattgcggtatcaaccagaaaacacttaatggaatctttgccgttggatcattcaccaaaccatgtgat |
283 |
Q |
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| || || | ||||||||| || | |||||| || ||||| ||||| ||||||||||||||||| | || |||||||||||| |
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| T |
3655863 |
acccaacaaagaaaaattgtggcaccaaccaaaacacactcaatggcatctttgccgttggatcgtctacaaaaccatgtgat |
3655945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 9572139 - 9572228
Alignment:
| Q |
1 |
cctcccttggttaagattatctgcaatccatgttttacttggacctgttattttattcactgtagacactaataaagagctgaagaaaaa |
90 |
Q |
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||||||||||||||| | ||||| |||||||| |||||||||||||||||| ||||| ||| |||| | ||||||| || |||||||| |
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| T |
9572139 |
cctcccttggttaaggtaatctgtaatccatggcttacttggacctgttattgtattccctgctgacagtgataaagaactaaagaaaaa |
9572228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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