View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10719_high_7 (Length: 291)
Name: NF10719_high_7
Description: NF10719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10719_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 6e-83; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 6 - 165
Target Start/End: Original strand, 23827629 - 23827788
Alignment:
| Q |
6 |
agtttgtataagctttgttttgttgatcatatcatgtcaatttcagggttaagttcgaagggtgtgattgtcaatacagaagatcacaatatcccatgtt |
105 |
Q |
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| T |
23827629 |
agtttgtataagctttgttttgttgatcatatcatgtcaatttcagggttaagttcgaagggtgtgattgtcaatacagaagatcacagtatcccatgtt |
23827728 |
T |
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| Q |
106 |
gcaagatttctcatgatatcattagctcaagtagtgaggtatcagccgcttcggtatcgg |
165 |
Q |
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| T |
23827729 |
gcaagatttctcatgatatcattagctcaagtagtgaggtatcagccgcttcggtatcgg |
23827788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 14 - 160
Target Start/End: Original strand, 23823717 - 23823864
Alignment:
| Q |
14 |
taagctttgttttgttg-atcatatcatgtcaatttcagggttaagttcgaagggtgtgattgtcaatacagaagatcacaatatcccatgttgcaagat |
112 |
Q |
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| T |
23823717 |
taagttttgttttattggatcatatgatttaagtttcagggttaagttcaaagagtgtgatagtcaatacagaagatcataatatcctatgttacaaggg |
23823816 |
T |
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| Q |
113 |
ttctcatgatatcattagctcaagtagtgaggtatcagccgcttcggt |
160 |
Q |
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| T |
23823817 |
ttctgatgatctcattagctcaagtagtgaggtatcagcaacttcggt |
23823864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 138
Target Start/End: Original strand, 23831649 - 23831765
Alignment:
| Q |
22 |
gttttgttgatcatatcatgtcaatttcagggttaagttcgaagggtgtgattgtcaatacagaagatcacaatatcccatgttgcaagatttctcatga |
121 |
Q |
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| T |
23831649 |
gttttattgatcatatcatttcagtttcagggttaagttcaaagagtgtgaatgtcaacacagaagatcttagtattccatgtagcaaggtttctggcga |
23831748 |
T |
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| Q |
122 |
tatcattagctcaagta |
138 |
Q |
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| T |
23831749 |
tctcagtagctcaagta |
23831765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 166 - 278
Target Start/End: Complemental strand, 16264341 - 16264229
Alignment:
| Q |
166 |
gggttgcaatacccagttcataccaacatgtcatgcaacataaaccaacttttacaaaatgtaataatgttgagtgtgtagttttgcatattatcacact |
265 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
16264341 |
gggttgcaatacccagttcataccaacatgtcatgcaacataaaccaacttttacaaaatgtaataatgttgagtgtgtagttttgcacattatcatact |
16264242 |
T |
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| Q |
266 |
aatggtctaacct |
278 |
Q |
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| T |
16264241 |
aatggtctaacct |
16264229 |
T |
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