View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10719_low_1 (Length: 570)
Name: NF10719_low_1
Description: NF10719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10719_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 494; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 18 - 560
Target Start/End: Complemental strand, 38342635 - 38342089
Alignment:
| Q |
18 |
ataccaaattcaattacaccactagaagccaaaaaacttctgcggtgtgtagcagaacagaaccaa----gtatgctcacttctttctcaatcaaagaat |
113 |
Q |
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| T |
38342635 |
ataccaaattcaattgcaccactccaagccaaaaaacttctgcggtgtgtagcagaacagaaccaaccaagtatgctcacttctttctcaatcaaagaat |
38342536 |
T |
|
| Q |
114 |
tgtatccacatagatgcatcttatgaataatcacaatgacacaacttgttgtattaaatatattcaagccatcacagacaattgaattcattacatacct |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38342535 |
tgtatccacatagatgcatcttatgaataatcacaatgacacaacttgttgtattaaatatattcaagccatcacagacaattgaattcattacataccc |
38342436 |
T |
|
| Q |
214 |
ggacctatttaccacaaccattttcttggtatcccaacacagtctccgtgactgggctctatcaaaacaatatgcagaattattctccaattttgtgccc |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38342435 |
agacctatttaccacaaccattttcttggtatcccaacacagtctctgtgactgggctctatcaaaacaatatgcagaattattctccaattttgtgccc |
38342336 |
T |
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| Q |
314 |
agataatctccaacatcctactagaatatatgccacgccacaacatcagcatgcattcacgcccaaagcaccaactctagattatagctcagctttgttc |
413 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38342335 |
aaataatctccaacatcctactagaatatatgccacgccacaacatcagcacgcattcacgcccaaagcaccaactctagattatagctcagctttgttc |
38342236 |
T |
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| Q |
414 |
cagctgctatccgccaaagaaattataattctcagctgctctctcaaccaactcgaagctttatcttttcttctacctcaaaataagcactaccctgaca |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38342235 |
cagctgctatccgccaaagaaattataattctcagctgctctctcaaccaactcgaagctttatcttttcttctacctcaaaataagcactaccctgaca |
38342136 |
T |
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| Q |
514 |
tgtgtaaatatatgttattatgatttgtcatctttttcacgtctctg |
560 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
38342135 |
tgtgtaaatatatgttattatgatttgtcatctttttcacttctctg |
38342089 |
T |
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