View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10719_low_11 (Length: 362)
Name: NF10719_low_11
Description: NF10719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10719_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 4 - 341
Target Start/End: Original strand, 41652392 - 41652729
Alignment:
| Q |
4 |
tagttaagcaggtagatatgacttgcctaagcaatcttattattgagaatgggagaaaagataaggaagttctttagtttttaatggcgcttatgttata |
103 |
Q |
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| T |
41652392 |
tagttaagcaggtagatatgacttgcctaagcaatcttattattgagaatgggagaaaagataaggaagttctttagtttttaatggcgcttatgttata |
41652491 |
T |
|
| Q |
104 |
acatgtggaaagggttttcgctgcaagtcatccagattctgtggagcttgagaaagcaaagcagatgctgaaagtacagtcactaaccatcctgaattta |
203 |
Q |
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| T |
41652492 |
acatgtggaaagggttttcgctgcaagtcatccagattctgtggagcttgagaaagcaaagccgatgctgaaagtacagtcactaaccatcctgaattta |
41652591 |
T |
|
| Q |
204 |
cttattgtcaattttatcgttcatattttctgattattgattgtaatgttgtataggagcatgagcaggctcttgtcgacataatttcaaggattgcaga |
303 |
Q |
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| T |
41652592 |
cttattgtcaattttatcgttcatattttctgattattgattgtaaagttgtataggagcatgagcaggctcttgtcgacataatttcaaggattgcaga |
41652691 |
T |
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| Q |
304 |
tgcatctgatggtgaaaatggtaacaattagatgtcta |
341 |
Q |
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| T |
41652692 |
tgcatctgatggtgaaagtggtaacaattagatgtcta |
41652729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 183; Significance: 6e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 4 - 341
Target Start/End: Original strand, 22879559 - 22879910
Alignment:
| Q |
4 |
tagttaagcaggtagatatgacttgcctaagcaatcttattattgagaat-gggagaaaagataaggaagttctttagtttttaatggcgcttatgttat |
102 |
Q |
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|||||||| ||||||||||||||| |||||| || |||||| ||||| ||| |||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
22879559 |
tagttaaggaggtagatatgacttacctaagaaaccttatt---gagaaacgggtgaaaagataaggaagttctttagtttttaatgccgcttatgttat |
22879655 |
T |
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| Q |
103 |
a--acatgtggaaagggttttcgctgcaagtcatccagattctgtggagcttgagaaagcaaagcagatgctgaaagtacagtcactaaccatcctgaat |
200 |
Q |
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| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||| |
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| T |
22879656 |
ataacaggtggaaagggtttttgctgcaagtcatccagattctgtggagcttgagaaagcaaagcaaatgctgaaagtacagtcgctaaccatcatgaaa |
22879755 |
T |
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| Q |
201 |
ttacttattgtcaatt--------------ttatcgttcatattttctgattattgattgtaatgttgtataggagcatgagcaggctcttgtcgacata |
286 |
Q |
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|||||||||||||| | |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| | |
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| T |
22879756 |
ttacttattgtcaactttaatgccacatggttattgttcatattttctgattgttgattgtaatgttgtataggagcatgagcaggctctcgtcgacgca |
22879855 |
T |
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| Q |
287 |
atttcaaggattgcagatgcatctgatggtgaaaatggtaacaattagatgtcta |
341 |
Q |
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||||| ||||||||||||||||| |||||||||| |||||| ||||||||||||| |
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| T |
22879856 |
atttcgaggattgcagatgcatcagatggtgaaagtggtaataattagatgtcta |
22879910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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