View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10719_low_17 (Length: 321)

Name: NF10719_low_17
Description: NF10719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10719_low_17
NF10719_low_17
[»] chr1 (19 HSPs)
chr1 (1-312)||(35295049-35295363)
chr1 (120-208)||(35213583-35213671)
chr1 (135-270)||(45526140-45526275)
chr1 (138-278)||(35272851-35272991)
chr1 (141-274)||(35203115-35203248)
chr1 (120-208)||(35206425-35206513)
chr1 (120-208)||(35216972-35217060)
chr1 (141-270)||(45534344-45534473)
chr1 (142-274)||(35192775-35192907)
chr1 (141-270)||(35476933-35477062)
chr1 (120-266)||(35145170-35145316)
chr1 (139-225)||(35228428-35228514)
chr1 (143-208)||(8640315-8640380)
chr1 (146-273)||(35265294-35265421)
chr1 (138-208)||(35222789-35222859)
chr1 (137-186)||(35253958-35254007)
chr1 (176-214)||(19267395-19267433)
chr1 (188-274)||(35148863-35148949)
chr1 (6-48)||(35228617-35228659)
[»] chr2 (1 HSPs)
chr2 (138-210)||(33137636-33137708)
[»] chr3 (4 HSPs)
chr3 (138-219)||(17663857-17663938)
chr3 (138-219)||(19246358-19246439)
chr3 (115-225)||(898894-899004)
chr3 (138-210)||(53921108-53921180)
[»] chr7 (1 HSPs)
chr7 (164-209)||(38635326-38635371)


Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 35295049 - 35295363
Alignment:
Q  1 tcgccctatctgatcgccctatgatcattgaccatggtaaaaaggtatcatctgaactgattattgtacaaaaagttggtgtacgttgtttcaaatgaat 100  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  35295049 tcgccctatctgatcgccctataatcattgaccatggtaaaaaggtatcatctgaattaattattgtacaaaaagttggtgtacgttgtttcaaatgaat 35295148  T
Q  101 agttcaaacttcaaaatgctaat---aagctttggaaatattgaaatgcagagctttcaattggagagaaagagtgggaaaaagtgttatatgcttgctg 197  Q
    | |||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35295149 atttcaaacttcaaaatgctaataataagctttggaaatattgaaatgcagagctttcaattggagagaaagagtgggaaaaagtgttatatgcttgctg 35295248  T
Q  198 ctagatctctcactattaattggggtgactctgagcgccattggaactggatttctatgcatgattccaggttagctcttttaagtttatattatattat 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35295249 ctagatctctcactattaattggggtgactctgagcgccattggaactggatttctatgcatgattccaggttagctcttttaagtttatattatattat 35295348  T
Q  298 tacctattacctttg 312  Q
    |||||||||||||||    
T  35295349 tacctattacctttg 35295363  T

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Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 120 - 208
Target Start/End: Complemental strand, 35213671 - 35213583
Alignment:
Q  120 taataagctttggaaatattgaaatgcagagctttcaattggagagaaagagtgggaaaaagtgttatatgcttgctgctagatctctc 208  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||    
T  35213671 taataaactttggaaatattgaaatgcagagctttcaattggagagaaaaagtggaaaaaaatgttatatgcttgctgctagatctctc 35213583  T

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Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 135 - 270
Target Start/End: Complemental strand, 45526275 - 45526140
Alignment:
Q  135 atattgaaatgcagagctttcaattggagagaaagagtgggaaaaagtgttatatgcttgctgctagatctctcactattaattggggtgactctgagcg 234  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||   |||| |||||||||   ||| ||    
T  45526275 atattgaaatgcagagctttcaattggatagaaagagtggaaaaaagtgttacatgcttgctgctagatctctccacattatttggggtgatgatgaccg 45526176  T
Q  235 ccattggaactggatttctatgcatgattccaggtt 270  Q
    | |||||| ||||| | |||||| ||||||||||||    
T  45526175 ctattggatctggactgctatgcctgattccaggtt 45526140  T

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Target: chr1; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 138 - 278
Target Start/End: Complemental strand, 35272991 - 35272851
Alignment:
Q  138 ttgaaatgcagagctttcaattggagagaaagagtgggaaaaagtgttatatgcttgctgctagatctctcactattaattggggtgactctgagcgcca 237  Q
    |||||||||||||| ||||||| |||||||||||||| ||||||||||| |||||| |||||||||||||  | |||  |||||||||   |   ||| |    
T  35272991 ttgaaatgcagagcattcaattagagagaaagagtggaaaaaagtgttacatgctttctgctagatctcttgcaattgtttggggtgatgatagacgcta 35272892  T
Q  238 ttggaactggatttctatgcatgattccaggttagctcttt 278  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  35272891 ttggaactggatttctatgcctgattccaggttagctcttt 35272851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 141 - 274
Target Start/End: Complemental strand, 35203248 - 35203115
Alignment:
Q  141 aaatgcagagctttcaattggagagaaagagtgggaaaaagtgttatatgcttgctgctagatctctcactattaattggggtgactctgagcgccattg 240  Q
    ||||||||||| |||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||| | |||  ||||||| |   ||| ||  ||||    
T  35203248 aaatgcagagcattcaattggatagaaagagtggaaaaaagtgttacatgcttgctgctagatctctctccattgcttggggtaatgatgatcgatattg 35203149  T
Q  241 gaactggatttctatgcatgattccaggttagct 274  Q
    |||||||||| |||||| ||||||||||||||||    
T  35203148 gaactggattgctatgcctgattccaggttagct 35203115  T

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Target: chr1; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 120 - 208
Target Start/End: Complemental strand, 35206513 - 35206425
Alignment:
Q  120 taataagctttggaaatattgaaatgcagagctttcaattggagagaaagagtgggaaaaagtgttatatgcttgctgctagatctctc 208  Q
    ||||||||||||||||||||||||||||||| || |||||||| ||||||||||| ||||||||||| |||||| ||||||||||||||    
T  35206513 taataagctttggaaatattgaaatgcagagtttccaattggatagaaagagtggaaaaaagtgttacatgctttctgctagatctctc 35206425  T

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Target: chr1; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 120 - 208
Target Start/End: Complemental strand, 35217060 - 35216972
Alignment:
Q  120 taataagctttggaaatattgaaatgcagagctttcaattggagagaaagagtgggaaaaagtgttatatgcttgctgctagatctctc 208  Q
    ||||||||||||||||||||||||||||||| || |||||||| ||||||||||| ||||||||||| |||||| ||||||||||||||    
T  35217060 taataagctttggaaatattgaaatgcagagtttccaattggatagaaagagtggaaaaaagtgttacatgctttctgctagatctctc 35216972  T

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Target: chr1; HSP #8
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 141 - 270
Target Start/End: Complemental strand, 45534473 - 45534344
Alignment:
Q  141 aaatgcagagctttcaattggagagaaagagtgggaaaaagtgttatatgcttgctgctagatctctcactattaattggggtgactctgagcgccattg 240  Q
    ||||||||||||||||||| || ||||| ||||||||||||||||| ||||||||||||||||||||| | |||| |||||||||     | ||| | ||    
T  45534473 aaatgcagagctttcaattagatagaaatagtgggaaaaagtgttacatgcttgctgctagatctctcgccattacttggggtgatgacaaccgctactg 45534374  T
Q  241 gaactggatttctatgcatgattccaggtt 270  Q
    |||||||||| |||||| ||||||||||||    
T  45534373 gaactggattgctatgcctgattccaggtt 45534344  T

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Target: chr1; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 142 - 274
Target Start/End: Complemental strand, 35192907 - 35192775
Alignment:
Q  142 aatgcagagctttcaattggagagaaagagtgggaaaaagtgttatatgcttgctgctagatctctcactattaattggggtgactctgagcgccattgg 241  Q
    |||| |||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||| | |||  |||||||||   |   ||| |||||    
T  35192907 aatgtagagctttcaattggataggaagagtggaaaaaagtgttatatgcttgctgctagatctctctccattgcttggggtgatgatcgacgctattgg 35192808  T
Q  242 aactggatttctatgcatgattccaggttagct 274  Q
    |||||||||||||||| | |||| |||||||||    
T  35192807 aactggatttctatgcctaattctaggttagct 35192775  T

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Target: chr1; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 141 - 270
Target Start/End: Complemental strand, 35477062 - 35476933
Alignment:
Q  141 aaatgcagagctttcaattggagagaaagagtgggaaaaagtgttatatgcttgctgctagatctctcactattaattggggtgactctgagcgccattg 240  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| | |||  |||||||||   ||| ||  ||||    
T  35477062 aaatgcagagccttcaattggatagaaagagtgggaaaaagtgttacatgcttgctgctagatctctcgccattgcttggggtgatgatgatcgatattg 35476963  T
Q  241 gaactggatttctatgcatgattccaggtt 270  Q
     ||||||||| || | | ||||||||||||    
T  35476962 caactggattgctgtacctgattccaggtt 35476933  T

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Target: chr1; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 120 - 266
Target Start/End: Complemental strand, 35145316 - 35145170
Alignment:
Q  120 taataagctttggaaatattgaaatgcagagctttcaattggagagaaagagtgggaaaaagtgttatatgcttgctgctagatctctcactattaattg 219  Q
    |||||||||||||||||||||||||||| |||||||||||| | ||| ||||| | ||||||||||| ||| || |||||||||||||| | |||  |||    
T  35145316 taataagctttggaaatattgaaatgcaaagctttcaattgaatagagagagtagaaaaaagtgttacatggtttctgctagatctctcgccattgcttg 35145217  T
Q  220 gggtgactctgagcgccattggaactggatttctatgcatgattcca 266  Q
    | ||||   ||| ||  |||| ||||||||| || ||||||||||||    
T  35145216 gagtgatgatgatcgatattgcaactggattgctgtgcatgattcca 35145170  T

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Target: chr1; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 139 - 225
Target Start/End: Complemental strand, 35228514 - 35228428
Alignment:
Q  139 tgaaatgcagagctttcaattggagagaaagagtgggaaaaagtgttatatgcttgctgctagatctctcactattaattggggtga 225  Q
    ||||||| |||| ||||||||||||||||||||||| || ||||||||||||||| |||||||||||||  | |||| |||||||||    
T  35228514 tgaaatgtagagttttcaattggagagaaagagtggaaagaagtgttatatgctttctgctagatctcttgccattacttggggtga 35228428  T

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Target: chr1; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 143 - 208
Target Start/End: Complemental strand, 8640380 - 8640315
Alignment:
Q  143 atgcagagctttcaattggagagaaagagtgggaaaaagtgttatatgcttgctgctagatctctc 208  Q
    ||||||||| |||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||    
T  8640380 atgcagagcgttcaattggacagaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 8640315  T

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Target: chr1; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 146 - 273
Target Start/End: Complemental strand, 35265421 - 35265294
Alignment:
Q  146 cagagctttcaattggagagaaagagtgggaaaaagtgttatatgcttgctgctagatctctcactattaattggggtgactctgagcgccattggaact 245  Q
    ||||| || |||||||| ||||||||||| ||||||||||| |||||| |||||||||||||  | |||  |||||||||  || ||| | | |||||||    
T  35265421 cagagtttccaattggacagaaagagtggaaaaaagtgttacatgctttctgctagatctcttgcaattgtttggggtgatactaagcactactggaact 35265322  T
Q  246 ggatttctatgcatgattccaggttagc 273  Q
    ||||| || ||| |||||||||||||||    
T  35265321 ggattcctttgcctgattccaggttagc 35265294  T

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Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 35222859 - 35222789
Alignment:
Q  138 ttgaaatgcagagctttcaattggagagaaagagtgggaaaaagtgttatatgcttgctgctagatctctc 208  Q
    |||||||  ||||| |||||||||| ||||||||||| |||||||||   |||||||||||||||||||||    
T  35222859 ttgaaattaagagcgttcaattggatagaaagagtggaaaaaagtgtgtcatgcttgctgctagatctctc 35222789  T

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Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 137 - 186
Target Start/End: Complemental strand, 35254007 - 35253958
Alignment:
Q  137 attgaaatgcagagctttcaattggagagaaagagtgggaaaaagtgtta 186  Q
    |||||||||||||| ||||||||||| ||||||||||| ||||| |||||    
T  35254007 attgaaatgcagagttttcaattggatagaaagagtggaaaaaattgtta 35253958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 214
Target Start/End: Original strand, 19267395 - 19267433
Alignment:
Q  176 aaaaagtgttatatgcttgctgctagatctctcactatt 214  Q
    ||||||||||| || ||||||||||||||||||||||||    
T  19267395 aaaaagtgttacattcttgctgctagatctctcactatt 19267433  T

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Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 274
Target Start/End: Complemental strand, 35148949 - 35148863
Alignment:
Q  188 atgcttgctgctagatctctcactattaattggggtgactctgagcgccattggaactggatttctatgcatgattccaggttagct 274  Q
    |||||| |||||||||||||||  |||  |||||||||   | ||||| ||||||||||||||  ||||| ||| ||||||||||||    
T  35148949 atgctttctgctagatctctcagcattgcttggggtgatgataagcgctattggaactggattaatatgcctgactccaggttagct 35148863  T

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Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 48
Target Start/End: Complemental strand, 35228659 - 35228617
Alignment:
Q  6 ctatctgatcgccctatgatcattgaccatggtaaaaaggtat 48  Q
    ||||||||||||||||| ||||| ||| |||||||||||||||    
T  35228659 ctatctgatcgccctatcatcatcgacaatggtaaaaaggtat 35228617  T

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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 138 - 210
Target Start/End: Original strand, 33137636 - 33137708
Alignment:
Q  138 ttgaaatgcagagctttcaattggagagaaagagtgggaaaaagtgttatatgcttgctgctagatctctcac 210  Q
    ||||||||||||||||||||||| | |||||||||||  |||||||||| |||||||||||||||||||||||    
T  33137636 ttgaaatgcagagctttcaattgcacagaaagagtggacaaaagtgttacatgcttgctgctagatctctcac 33137708  T

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Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 138 - 219
Target Start/End: Original strand, 17663857 - 17663938
Alignment:
Q  138 ttgaaatgcagagctttcaattggagagaaagagtgggaaaaagtgttatatgcttgctgctagatctctcactattaattg 219  Q
    ||||||||||||||||||||||| | |||||||||||  | ||||||||  |||||||||||||||||||||| ||| ||||    
T  17663857 ttgaaatgcagagctttcaattgcaaagaaagagtggacagaagtgttacctgcttgctgctagatctctcaccattgattg 17663938  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 138 - 219
Target Start/End: Original strand, 19246358 - 19246439
Alignment:
Q  138 ttgaaatgcagagctttcaattggagagaaagagtgggaaaaagtgttatatgcttgctgctagatctctcactattaattg 219  Q
    ||||||||||||||||||||||| | |||||||||||  | ||||||||  |||||||||||||||||||||| ||| ||||    
T  19246358 ttgaaatgcagagctttcaattgcaaagaaagagtggacagaagtgttacctgcttgctgctagatctctcaccattgattg 19246439  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 225
Target Start/End: Original strand, 898894 - 899004
Alignment:
Q  115 aatgctaataagctttggaaatat-tgaaatgcagagctttcaattggagagaaagagtgggaaaaagtgttatatgcttgctgctagatctctcactat 213  Q
    ||||||||||||| || ||| ||| |||||| ||||||||| ||||||| || || ||||| ||||  ||||| ||||||||||| ||||||||||| ||    
T  898894 aatgctaataagcctttgaa-tatatgaaattcagagctttaaattggataggaaaagtggaaaaatatgttacatgcttgctgccagatctctcaccat 898992  T
Q  214 taattggggtga 225  Q
    | |||| |||||    
T  898993 tcattgcggtga 899004  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 210
Target Start/End: Original strand, 53921108 - 53921180
Alignment:
Q  138 ttgaaatgcagagctttcaattggagagaaagagtgggaaaaagtgttatatgcttgctgctagatctctcac 210  Q
    ||||||||||||   |||||||||| ||||||||||||||||| ||||  |||||| |||||||  |||||||    
T  53921108 ttgaaatgcagattattcaattggatagaaagagtgggaaaaaatgttgcatgctttctgctagggctctcac 53921180  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 38635371 - 38635326
Alignment:
Q  164 agaaagagtgggaaaaagtgttatatgcttgctgctagatctctca 209  Q
    ||||||||||| ||||||||||| || |||||||||| ||||||||    
T  38635371 agaaagagtggaaaaaagtgttacattcttgctgctaaatctctca 38635326  T

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