View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10719_low_18 (Length: 313)
Name: NF10719_low_18
Description: NF10719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10719_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 10 - 294
Target Start/End: Original strand, 28450287 - 28450571
Alignment:
| Q |
10 |
aaatccaaatccaacagaagaaaaagaaaagcccttaaaagcgaaccaactaatgtttaaaacaactagggttttacaggtaaatatggtactaggcaat |
109 |
Q |
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| T |
28450287 |
aaatccaaatccaacagaagaaaaagaaaagcccttaaaagcgaaccaactaatgtttaaaacaactagggttttacaggtaaatatggtactaggcaat |
28450386 |
T |
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| Q |
110 |
ttgggggttagggttttgcgatgttgaacatcaaccaatagagcattgagaaaattgagatgaagattgagatacttaacattgcgtttaccaaggaggt |
209 |
Q |
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| T |
28450387 |
ttgggggttagggttttgcgatgttgaacatcaaccaatagagcattgagaaaattgagatgaagattgagatacttaacattgcgtttaccaaggaggt |
28450486 |
T |
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| Q |
210 |
aaagccaattgttgagacggagaatgctaaaatatttgagatgagcatattgaatgtcgagggagaaactgtcgattgaattaga |
294 |
Q |
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| T |
28450487 |
aaagccaattgttgagacggagaatgctaaaatagttgagatgagcatattgaatgtcgagggagaaactgtcgattgaattaga |
28450571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 97
Target Start/End: Original strand, 48675973 - 48676068
Alignment:
| Q |
2 |
agtgaaggaaatccaaatccaacagaagaaaaagaaaagcccttaaaagcgaaccaactaatgtttaaaacaactagggttttacaggtaaatatg |
97 |
Q |
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| T |
48675973 |
agtgagggaaatccaaattgaacagaagaaacacaaaagccctctacacggaaccaactaagctttagaacctctagggttttacagctaaatatg |
48676068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 1025563 - 1025609
Alignment:
| Q |
1 |
gagtgaaggaaatccaaatccaacagaagaaaaagaaaagcccttaa |
47 |
Q |
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| T |
1025563 |
gagtgatggaaatccaaatccaatggaagaaaaagaaaaacccttaa |
1025609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 1407267 - 1407226
Alignment:
| Q |
1 |
gagtgaaggaaatccaaatccaacagaagaaaaagaaaagcc |
42 |
Q |
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| T |
1407267 |
gagtgatggaaatccaaatccaatagaagaaaaagagaagcc |
1407226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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