View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10719_low_19 (Length: 310)
Name: NF10719_low_19
Description: NF10719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10719_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 14 - 294
Target Start/End: Complemental strand, 35364128 - 35363845
Alignment:
| Q |
14 |
agggagcgaagacagtgacagaaggtgaatgttcaatccataaaagcaattagagggatttcnnnnnnn-tcattggaaggtgattgtcatgatcgttga |
112 |
Q |
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| T |
35364128 |
agggagtgaagacagtgacagaaggtgaatgttcaatacataaaagcaattagagggatttcaaaaaaaatcattggaaggtgattgtcatgatcgttga |
35364029 |
T |
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| Q |
113 |
tgatctagatcggtattcatcgtaatattcattgattttggattggatgtattgatctc--tctcccatctaattatttctctgannnnnnnnnctccct |
210 |
Q |
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| T |
35364028 |
tgatctagatcggcattcatcgtaatattcattgattttggattggatgtattgatctctctctcccatctaattatttctctgatttttttttctccct |
35363929 |
T |
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| Q |
211 |
atattttcttcacctttgcaggttttccttttcggttagattatgtttactaagggatgcataacttaactgtaatattgatgt |
294 |
Q |
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| T |
35363928 |
atattttcttcacctttgcaggttttccttttcggttagattatgtttactgagggatgcataacttaactgtaatattgatgt |
35363845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 20 - 287
Target Start/End: Original strand, 21786651 - 21786917
Alignment:
| Q |
20 |
cgaagacagtgacagaaggtgaatgttcaatccataaaagcaattagagggatttcnnnnnnntcattggaaggtgattgtcatgatcgttgatgatcta |
119 |
Q |
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| T |
21786651 |
cgaagacagtggcggagggtgattattcaatcgatacaagcaattagagggatttttaaaaattcaccggaaggtgattgtcatgatcgttgatgatcta |
21786750 |
T |
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| Q |
120 |
gatcggtattcatcgtaatattcattgattttggattggatgtattgatctctc--tcccatctaattatttctctgannnnnnnnnctccctatatttt |
217 |
Q |
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| T |
21786751 |
gataggtattcttcataatattcattg--gttggattcgatgtatcggtctctctatctcatctaattatgtttctga-ttttttttctccctatatttt |
21786847 |
T |
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| Q |
218 |
cttcacctttgcaggttttccttttcggttagattatgtttactaagggatgcataacttaactgtaata |
287 |
Q |
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| T |
21786848 |
cttcacttttgcaggttttcctttttggtaggattgtgtttattgaggaacgcatagcttgactgtaata |
21786917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 32 - 144
Target Start/End: Original strand, 32662635 - 32662747
Alignment:
| Q |
32 |
cagaaggtgaatgttcaatccataaaagcaattagagggatttcnnnnnnntcattggaaggtgattgtcatgatcgttgatgatctagatcggtattca |
131 |
Q |
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| T |
32662635 |
cagaaggtgaatgttcaatccgtaaaagcaattagatagatttcaaaacattcactagaaggtgattgtcatgatcgttgctgatctagatcggtattca |
32662734 |
T |
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| Q |
132 |
tcgtaatattcat |
144 |
Q |
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|| |||||||||| |
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| T |
32662735 |
tcataatattcat |
32662747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 67
Target Start/End: Original strand, 32656111 - 32656147
Alignment:
| Q |
32 |
cagaaggtgaatgttcaatccat-aaaagcaattaga |
67 |
Q |
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| T |
32656111 |
cagaaggtgaatgttcaatccataaaaagcaattaga |
32656147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 174
Target Start/End: Original strand, 38682039 - 38682108
Alignment:
| Q |
103 |
tgatcgttgatgatctagatcggtattcatcgtaatattcattgattttggattggatgtattgatctctct |
174 |
Q |
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| T |
38682039 |
tgatcgtttatgatctagataggtattcttcataatattcattg--gttggattgaatgtatcggtctctct |
38682108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 294
Target Start/End: Original strand, 38682143 - 38682219
Alignment:
| Q |
218 |
cttcacctttgcaggttttccttttcggttagattatgtttactaagggatgcataacttaactgtaatattgatgt |
294 |
Q |
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| T |
38682143 |
cttcacttttgcaggttttcctttttggtaggattgtgtttatagaggaatgcatagcttgactgtaatactgatgt |
38682219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 174
Target Start/End: Original strand, 38683292 - 38683361
Alignment:
| Q |
103 |
tgatcgttgatgatctagatcggtattcatcgtaatattcattgattttggattggatgtattgatctctct |
174 |
Q |
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| T |
38683292 |
tgatcgtttatgatctagataggtattcttcataatattcattg--gttggattgaatgtatcggtctctct |
38683361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 294
Target Start/End: Original strand, 38683396 - 38683472
Alignment:
| Q |
218 |
cttcacctttgcaggttttccttttcggttagattatgtttactaagggatgcataacttaactgtaatattgatgt |
294 |
Q |
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|||||| |||||||||||||||||| ||| |||| |||||| ||| ||||||| ||| ||||||||| |||||| |
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| T |
38683396 |
cttcacttttgcaggttttcctttttggtaggattgtgtttatagaggaatgcatagcttgactgtaatactgatgt |
38683472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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