View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10719_low_20 (Length: 298)
Name: NF10719_low_20
Description: NF10719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10719_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 19 - 277
Target Start/End: Complemental strand, 44903796 - 44903538
Alignment:
| Q |
19 |
cagagaacacatcaaaggttgtaggaaaagcacaaggattcataatccctgtggaacagtttcagcaatcagaattcaatgttttgtatctcacttttga |
118 |
Q |
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| T |
44903796 |
cagagaacacatcaaaggttgtaggaaaagcacaaggattcataatccctgtggaacagtttcagcaatcagaattcaatgttttgtatctcacttttga |
44903697 |
T |
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| Q |
119 |
tacaccagatcattcaggtagtttgagtgtgcaagcaatcaaagttgctcatgaggaaagagaagaattcagagtggtaggaggaacaggttcgtttgca |
218 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44903696 |
tacaccagatcattcaggtagcttgagtgtgcaagcaatcaaagttgctcataaggaaagagaagaattcagagtggtaggaggaacaggttcgtttgca |
44903597 |
T |
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| Q |
219 |
tttgttcatggtgttgcagtttttactcaaacagatgaacagacaagtgatgaagctat |
277 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44903596 |
tttgctcatggtgttgcagtttttactcaaacagatgaacagacaagtgatgaagctat |
44903538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 19 - 277
Target Start/End: Complemental strand, 44917268 - 44917010
Alignment:
| Q |
19 |
cagagaacacatcaaaggttgtaggaaaagcacaaggattcataatccctgtggaacagtttcagcaatcagaattcaatgttttgtatctcacttttga |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44917268 |
cagagaacacatcaaaggttgtaggaaaagcacaaggattcataatccctgtggaacagtttcagcaatcagaattcaatgttttgtatctcacttttga |
44917169 |
T |
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| Q |
119 |
tacaccagatcattcaggtagtttgagtgtgcaagcaatcaaagttgctcatgaggaaagagaagaattcagagtggtaggaggaacaggttcgtttgca |
218 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44917168 |
tacaccagatcattcaggtagcttgagtgtgcaagcaatcaaagttgctcataaggaaagagaagaattcagagtggtaggaggaacaggttcgtttgca |
44917069 |
T |
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| Q |
219 |
tttgttcatggtgttgcagtttttactcaaacagatgaacagacaagtgatgaagctat |
277 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44917068 |
tttgctcatggtgttgcagtttttactcaaacagatgaacagacaagtgatgaagctat |
44917010 |
T |
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