View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10719_low_30 (Length: 247)
Name: NF10719_low_30
Description: NF10719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10719_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 139; Significance: 8e-73; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 85 - 235
Target Start/End: Original strand, 966014 - 966164
Alignment:
| Q |
85 |
ggagacattgaaatcaagcatttgaagttccttaagccacttacaggctaacttttcgtcgtatgatgtcaaagtgtatcttgcatttggattttcaatc |
184 |
Q |
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| T |
966014 |
ggagacattgaaatcaagcatttgaagttccttaagccacttagaggctaacttttcgtcatatgatgtcaaagtgtatcttacatttggattttcaatc |
966113 |
T |
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| Q |
185 |
tctcatctccaagtatctgtgtaaacaatgaaaaggtaaattcattgtcct |
235 |
Q |
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| T |
966114 |
tctcatctccaagtatctgtgtaaacaatgaaaaggtaaattcattgtcct |
966164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 965980 - 966017
Alignment:
| Q |
22 |
catatctctaccggctaggaacgaaaagcaattaggag |
59 |
Q |
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| T |
965980 |
catatctctaccggctaggaacgaaaagcaattaggag |
966017 |
T |
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