View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10719_low_31 (Length: 246)
Name: NF10719_low_31
Description: NF10719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10719_low_31 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 31869662 - 31869427
Alignment:
| Q |
1 |
actcaaatatcttgctggtctgtgtgtatccgatgtttattgaacnnnnnnnntgttatgttttgtgatttttaggtagctacaatcatctgtactttcc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31869662 |
actcaaatatcttgctggtctgtgtgtatccaatgtttattgaacaaaaaaaatgttatgttttgtgatttttaggtagctacaatcatctgtactttcc |
31869563 |
T |
|
| Q |
101 |
tgtaaaagcatatatatgtaagtattcaactgatattggttttctttggcttgaatttcatacagggctaagaaagtgactaaaatgacagagagtgttg |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31869562 |
tgtaaaagcatatatatgtaagtatacaactgatattggttttctttggcttgaatttcatacagggctaagaaagtgactaaaatgacagagagtgttg |
31869463 |
T |
|
| Q |
201 |
ccaagggggtcctcactggagttgtgaaggtctctg |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
31869462 |
ccaagggggtcctcactggagttgtgaaggtctctg |
31869427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University