View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10719_low_32 (Length: 245)
Name: NF10719_low_32
Description: NF10719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10719_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 6345078 - 6344861
Alignment:
| Q |
18 |
agtacaattcggtgaatccacgtatgagtgcaaaatcgaattacaaaatgttgatattttgattaaatagatctatgaaacttcgtaattttaatttaat |
117 |
Q |
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| T |
6345078 |
agtacaattcggtgaatccacgtatgagcgcaaaactgaattataaaaagttgatattttgattaaatagatctatgaaacttcgtaattttaatttaat |
6344979 |
T |
|
| Q |
118 |
caagttagtctctccacatggatatgttatcaaattcatcgctgacatcaccatatcaaagtcgttatatttttccgcaagaggaaagacatgaacactc |
217 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
6344978 |
caagttagtctctccacgtggatatgttatcaaattcatcgctgacatcaccatatcaaagtcgttatattttttcgcaagaggaaagacatgaacactc |
6344879 |
T |
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| Q |
218 |
tttttaacactttctctg |
235 |
Q |
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|||||||||||||||||| |
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| T |
6344878 |
tttttaacactttctctg |
6344861 |
T |
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