View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10719_low_33 (Length: 244)

Name: NF10719_low_33
Description: NF10719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10719_low_33
NF10719_low_33
[»] chr8 (4 HSPs)
chr8 (16-190)||(40270186-40270360)
chr8 (74-229)||(40275098-40275253)
chr8 (112-188)||(19177405-19177480)
chr8 (112-167)||(44206260-44206315)
[»] scaffold0009 (2 HSPs)
scaffold0009 (41-190)||(27297-27448)
scaffold0009 (41-190)||(32179-32330)
[»] scaffold0134 (2 HSPs)
scaffold0134 (41-190)||(20069-20218)
scaffold0134 (41-190)||(41097-41246)
[»] chr6 (3 HSPs)
chr6 (63-190)||(16589940-16590067)
chr6 (63-190)||(16605313-16605440)
chr6 (63-190)||(16594946-16595073)
[»] chr1 (2 HSPs)
chr1 (41-189)||(40524874-40525022)
chr1 (112-190)||(19326856-19326933)
[»] chr3 (2 HSPs)
chr3 (113-190)||(14031265-14031342)
chr3 (112-190)||(29073960-29074038)
[»] chr2 (1 HSPs)
chr2 (113-184)||(14914102-14914173)
[»] chr4 (1 HSPs)
chr4 (112-191)||(27442644-27442722)


Alignment Details
Target: chr8 (Bit Score: 159; Significance: 9e-85; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 16 - 190
Target Start/End: Original strand, 40270186 - 40270360
Alignment:
Q  16 gcaacttatgacatattcaagggagtgtaagataatggaatgcttactttctcattgatctgaatagcatatatatacatcaaagtgtgactttttgtca 115  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  40270186 gcaacttatgacatattcaagggagtgtaacataatggaatgcttactttctcattgatttgaatagcatatatatacatcaaagtgtgaccttttgtca 40270285  T
Q  116 actatctaattatgatacaacctaattataggaaactaaatatgactaattacaacaaaatattctattctatca 190  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  40270286 actatctaattatgatacaacctaattataggaaactaattatgactaattacaacaaaatattctattctatca 40270360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 74 - 229
Target Start/End: Original strand, 40275098 - 40275253
Alignment:
Q  74 tctgaatagcatatatatacatcaaagtgtgactttttgtcaactatctaattatgatacaacctaattataggaaactaaatatgactaattacaacaa 173  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  40275098 tctgaatagcatatatatgcatcaaagtgtgaccttttgtcaactatctaattatgatacaacctaattataggaaactaattaggactaattacaacaa 40275197  T
Q  174 aatattctattctatcagggaggacccataaattttacattgtgagggataaatat 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40275198 aatattctattctatcagggaggacccataaattttacattgtgagggataaatat 40275253  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 112 - 188
Target Start/End: Complemental strand, 19177480 - 19177405
Alignment:
Q  112 gtcaactatctaattatgatacaacctaattataggaaactaaatatgactaattacaacaaaatattctattctat 188  Q
    ||||||||||||||||||||||||| |||||| |||||| ||| ||| ||||||||  ||  |||||||||||||||    
T  19177480 gtcaactatctaattatgatacaacataattagaggaaaataattataactaattatgac-taatattctattctat 19177405  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 167
Target Start/End: Original strand, 44206260 - 44206315
Alignment:
Q  112 gtcaactatctaattatgatacaacctaattataggaaactaaatatgactaatta 167  Q
    ||||||||||||||||||||||||| |||||| |||||| ||| ||| ||||||||    
T  44206260 gtcaactatctaattatgatacaacataattacaggaaaataattataactaatta 44206315  T

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Target: scaffold0009 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 41 - 190
Target Start/End: Complemental strand, 27448 - 27297
Alignment:
Q  41 tgtaagataatggaatgctta-ctttctcattgatctgaatagcatatatatacatcaaagtgtgactttttgtcaactatctaattatgatacaaccta 139  Q
    |||||||| |||||||| ||  ||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||    
T  27448 tgtaagattatggaatgtttggctttctcattgatctgaatagaatatatatacatcaatgtgtgacattttgtcaactatctaattatgatacaacata 27349  T
Q  140 attataggaaactaaatatgactaattacaacaaaatattc-tattctatca 190  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  27348 attataggaaactaattatgactaattacaacaaaatattcttattctatca 27297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 41 - 190
Target Start/End: Complemental strand, 32330 - 32179
Alignment:
Q  41 tgtaagataatggaatgctta-ctttctcattgatctgaatagcatatatatacatcaaagtgtgactttttgtcaactatctaattatgatacaaccta 139  Q
    |||||||| ||||||| |||  ||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||    
T  32330 tgtaagattatggaatacttggctttctcattgatctgaatagaatatatatacatcaatgtgtgacattttgtcaactatctaattatgatacaacata 32231  T
Q  140 attataggaaactaaatatgactaattacaacaaaatattc-tattctatca 190  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  32230 attataggaaactaattatgactaattacaacaaaatattcttattctatca 32179  T

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Target: scaffold0134 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 41 - 190
Target Start/End: Complemental strand, 20218 - 20069
Alignment:
Q  41 tgtaagataatggaatgctt-actttctcattgatctgaatagcatatatatacatcaaagtgtgactttttg-tcaactatctaattatgatacaacct 138  Q
    ||||||||||| |||||| | | ||||||||| |||||||||| |||||||  |||||| |||| || ||||| |||||||||||||||||||||||| |    
T  20218 tgtaagataatagaatgcctgagtttctcattcatctgaatagaatatata--catcaatgtgtaacgttttggtcaactatctaattatgatacaacat 20121  T
Q  139 aattataggaaactaaatatgactaattacaacaaaatattctattctatca 190  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  20120 aattatacgaaactaattatgactaattacaacaaaatattctattctatca 20069  T

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Target: scaffold0134; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 41 - 190
Target Start/End: Complemental strand, 41246 - 41097
Alignment:
Q  41 tgtaagataatggaatgctt-actttctcattgatctgaatagcatatatatacatcaaagtgtgactttttg-tcaactatctaattatgatacaacct 138  Q
    ||||||||||| |||||| | | ||||||||| |||||||||| ||||||| ||  ||| |||| || ||||| |||||||||||||||||||||||| |    
T  41246 tgtaagataatagaatgcctgagtttctcattcatctgaatagaatatatacac--caatgtgtaacgttttggtcaactatctaattatgatacaacat 41149  T
Q  139 aattataggaaactaaatatgactaattacaacaaaatattctattctatca 190  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  41148 aattataggaaactaattatgactaattacaataaaatattctattctatca 41097  T

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Target: chr6 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 63 - 190
Target Start/End: Complemental strand, 16590067 - 16589940
Alignment:
Q  63 tttctcattgatctgaatagcatatatatacatcaaagtgtgactttttgtcaactatctaattatgatacaacctaattataggaaactaaatatgact 162  Q
    |||||||||||||||| ||| ||||||||||| ||| |||| || ||| ||||||||||||||||||||||| | ||||||||||||||||  |||||||    
T  16590067 tttctcattgatctgagtagaatatatatacaacaatgtgtaacgtttggtcaactatctaattatgatacagcataattataggaaactacttatgact 16589968  T
Q  163 aattacaacaaaatattctattctatca 190  Q
    ||| | ||||||||||||||||||||||    
T  16589967 aataataacaaaatattctattctatca 16589940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 63 - 190
Target Start/End: Original strand, 16605313 - 16605440
Alignment:
Q  63 tttctcattgatctgaatagcatatatatacatcaaagtgtgactttttgtcaactatctaattatgatacaacctaattataggaaactaaatatgact 162  Q
    |||||||||||||||| ||| ||||||||||| ||| |||| || ||| ||||||||||||||||||||||| | ||||||||||||||||  |||||||    
T  16605313 tttctcattgatctgagtagaatatatatacaacaatgtgtaacgtttggtcaactatctaattatgatacagcataattataggaaactacttatgact 16605412  T
Q  163 aattacaacaaaatattctattctatca 190  Q
    ||| | ||||||||||||||||||||||    
T  16605413 aataataacaaaatattctattctatca 16605440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 63 - 190
Target Start/End: Complemental strand, 16595073 - 16594946
Alignment:
Q  63 tttctcattgatctgaatagcatatatatacatcaaagtgtgactttttgtcaactatctaattatgatacaacctaattataggaaactaaatatgact 162  Q
    |||||||||||||||| ||| ||||||||||| ||| |||| || ||| ||||||||||||||||||||| | | ||||||||||||||||  |||||||    
T  16595073 tttctcattgatctgagtagaatatatatacaacaatgtgtaacgtttggtcaactatctaattatgatatagcataattataggaaactacttatgact 16594974  T
Q  163 aattacaacaaaatattctattctatca 190  Q
    ||| | ||||||||||||||||||||||    
T  16594973 aataataacaaaatattctattctatca 16594946  T

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Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 41 - 189
Target Start/End: Original strand, 40524874 - 40525022
Alignment:
Q  41 tgtaagataatggaatgcttac-tttctcattgatctgaatagcatatatatacatcaaagtgtgactttttgtcaactatctaattatgatacaaccta 139  Q
    |||||||||||||||||||| | ||||||||| |||||||||| ||||||| |  | |  |||| || ||| ||||||||||||||||||||||||| ||    
T  40524874 tgtaagataatggaatgcttccgtttctcattcatctgaatagaatatatagaact-attgtgtaacgtttggtcaactatctaattatgatacaacata 40524972  T
Q  140 attataggaaactaaatatgactaattacaacaaaatattctattctatc 189  Q
    ||||||||||| ||| |||    |||||  ||||||||||||||||||||    
T  40524973 attataggaaaataattatagtcaattatgacaaaatattctattctatc 40525022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 190
Target Start/End: Complemental strand, 19326933 - 19326856
Alignment:
Q  112 gtcaactatctaattatgatacaacctaattataggaaactaaatatgactaattacaacaaaatattctattctatca 190  Q
    ||||||||||||||||||||||||| |||||| |||||| ||| ||| ||||||||  ||  |||||||||||||||||    
T  19326933 gtcaactatctaattatgatacaacataattacaggaaaataattataactaattatgac-taatattctattctatca 19326856  T

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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 113 - 190
Target Start/End: Original strand, 14031265 - 14031342
Alignment:
Q  113 tcaactatctaattatgatacaacctaattataggaaactaaatatgactaattacaacaaaatattctattctatca 190  Q
    |||| ||||||||||||||||||| ||||||||||||| ||||||   | ||||| ||||||||||||||||||||||    
T  14031265 tcaattatctaattatgatacaacataattataggaaaataaatagagccaattataacaaaatattctattctatca 14031342  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 190
Target Start/End: Original strand, 29073960 - 29074038
Alignment:
Q  112 gtcaactatctaattatgatacaacctaattataggaaactaaatatgactaattacaacaaaatattctattctatca 190  Q
    ||||||||||||||||||||||||| |||||| |||||| ||| |||  | |||||  |||||||| |||||| |||||    
T  29073960 gtcaactatctaattatgatacaacttaattacaggaaaataattatagccaattatgacaaaataatctattatatca 29074038  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 113 - 184
Target Start/End: Complemental strand, 14914173 - 14914102
Alignment:
Q  113 tcaactatctaattatgatacaacctaattataggaaactaaatatgactaattacaacaaaatattctatt 184  Q
    |||||||||||||||||||||||  |||||| |||||| ||  ||||||||||||  |||||||||||||||    
T  14914173 tcaactatctaattatgatacaatataattacaggaaagtatttatgactaattattacaaaatattctatt 14914102  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 191
Target Start/End: Original strand, 27442644 - 27442722
Alignment:
Q  112 gtcaactatctaattatgatacaacctaattataggaaactaaatatgactaattacaacaaaatattctattctatcag 191  Q
    ||||||||||||||||||||||| | |||||| |||||| ||| ||| ||||||||  ||  ||||||||||||||||||    
T  27442644 gtcaactatctaattatgatacagcataattacaggaaaataattataactaattatgac-taatattctattctatcag 27442722  T

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