View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10719_low_34 (Length: 241)

Name: NF10719_low_34
Description: NF10719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10719_low_34
NF10719_low_34
[»] chr2 (5 HSPs)
chr2 (19-241)||(17456097-17456319)
chr2 (143-197)||(2859363-2859417)
chr2 (143-197)||(45690503-45690557)
chr2 (140-169)||(8362402-8362431)
chr2 (194-234)||(2307359-2307399)
[»] scaffold0009 (1 HSPs)
scaffold0009 (143-189)||(214496-214542)
[»] chr1 (5 HSPs)
chr1 (143-197)||(49982460-49982514)
chr1 (143-197)||(36735516-36735571)
chr1 (143-189)||(23539946-23539992)
chr1 (132-189)||(40054944-40055001)
chr1 (140-184)||(26423842-26423886)
[»] chr8 (2 HSPs)
chr8 (144-197)||(12801454-12801507)
chr8 (143-197)||(30777276-30777330)
[»] chr7 (7 HSPs)
chr7 (144-197)||(27800033-27800086)
chr7 (143-197)||(2089211-2089265)
chr7 (143-189)||(29688928-29688974)
chr7 (140-184)||(1343382-1343426)
chr7 (143-183)||(8159642-8159682)
chr7 (133-189)||(21919682-21919738)
chr7 (143-187)||(43542138-43542182)
[»] chr3 (4 HSPs)
chr3 (140-184)||(11510718-11510762)
chr3 (140-169)||(4393523-4393552)
chr3 (140-169)||(24105151-24105180)
chr3 (143-184)||(52776453-52776494)
[»] chr6 (5 HSPs)
chr6 (143-189)||(1705962-1706008)
chr6 (143-189)||(14507977-14508023)
chr6 (143-189)||(19474028-19474074)
chr6 (143-184)||(10887813-10887854)
chr6 (140-184)||(7344322-7344366)
[»] chr5 (1 HSPs)
chr5 (140-169)||(19189484-19189513)
[»] chr4 (6 HSPs)
chr4 (143-184)||(4491217-4491258)
chr4 (143-184)||(4695669-4695710)
chr4 (140-169)||(9579665-9579694)
chr4 (140-169)||(9585360-9585389)
chr4 (140-169)||(18051775-18051804)
chr4 (193-234)||(19627871-19627912)


Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 17456319 - 17456097
Alignment:
Q  19 gcaattgcattccacgttgttgatcagtctacttgtgttgtttttctttgcactgttattatgggcaataagtgggtggttcgaccattaatatatgcac 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17456319 gcaattgcattccacgttgttgatcagtctacttgtgttgtttttctttgcactgttattatgggcaataagtgggtggttcgaccattaatatatgcac 17456220  T
Q  119 attcacataacaaaaatatatgggacttctacggtacacctcataaattgaactgcaccggtactcttgctatataaataattagttgcttgtcaatact 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  17456219 attcacataacaaaaatatatgggacttctacggtacacctcataaattgaactgcaccggtactcttgctatataaatagttagttgtttgtcaatact 17456120  T
Q  219 tatattttagaaaacaccatcgc 241  Q
    |||||||||||||||||||||||    
T  17456119 tatattttagaaaacaccatcgc 17456097  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 197
Target Start/End: Original strand, 2859363 - 2859417
Alignment:
Q  143 acttctacggtacacctcataaattgaactgcaccggtactcttgctatataaat 197  Q
    |||||||||||||| ||||||||||||  || ||||||||||||| | |||||||    
T  2859363 acttctacggtacatctcataaattgaggtgtaccggtactcttgttctataaat 2859417  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 197
Target Start/End: Original strand, 45690503 - 45690557
Alignment:
Q  143 acttctacggtacacctcataaattgaactgcaccggtactcttgctatataaat 197  Q
    ||||||||||||||||||| |||||||  || ||||||||||| ||| |||||||    
T  45690503 acttctacggtacacctcacaaattgaggtgtaccggtactctcgctctataaat 45690557  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 169
Target Start/End: Original strand, 8362402 - 8362431
Alignment:
Q  140 gggacttctacggtacacctcataaattga 169  Q
    ||||||||||||||||||||||||||||||    
T  8362402 gggacttctacggtacacctcataaattga 8362431  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 234
Target Start/End: Original strand, 2307359 - 2307399
Alignment:
Q  194 aaataattagttgcttgtcaatacttatattttagaaaaca 234  Q
    |||||| |||||| ||||||||| |||||||||||||||||    
T  2307359 aaataaatagttgtttgtcaatatttatattttagaaaaca 2307399  T

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Target: scaffold0009 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 143 - 189
Target Start/End: Complemental strand, 214542 - 214496
Alignment:
Q  143 acttctacggtacacctcataaattgaactgcaccggtactcttgct 189  Q
    |||||||||||||||||||||||||||| || |||||||||| ||||    
T  214542 acttctacggtacacctcataaattgaattgtaccggtactcctgct 214496  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 143 - 197
Target Start/End: Original strand, 49982460 - 49982514
Alignment:
Q  143 acttctacggtacacctcataaattgaactgcaccggtactcttgctatataaat 197  Q
    |||||||||||||||||||||||||||  || |||| ||||| ||||||||||||    
T  49982460 acttctacggtacacctcataaattgaggtgtaccgatactcctgctatataaat 49982514  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 197
Target Start/End: Original strand, 36735516 - 36735571
Alignment:
Q  143 acttctacggtacacctcataaattgaactgcaccggtact-cttgctatataaat 197  Q
    |||||||||||||||||||||||||| | || ||||||||| |||||| |||||||    
T  36735516 acttctacggtacacctcataaattggagtgtaccggtactccttgctttataaat 36735571  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 189
Target Start/End: Original strand, 23539946 - 23539992
Alignment:
Q  143 acttctacggtacacctcataaattgaactgcaccggtactcttgct 189  Q
    ||||||||||||||||||| |||||||  || |||||||||||||||    
T  23539946 acttctacggtacacctcagaaattgaggtgtaccggtactcttgct 23539992  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 189
Target Start/End: Complemental strand, 40055001 - 40054944
Alignment:
Q  132 aaatatatgggacttctacggtacacctcataaattgaactgcaccggtactcttgct 189  Q
    ||||||| || ||||||||||||||||||| |||||||  || |||||||||| ||||    
T  40055001 aaatatagggaacttctacggtacacctcacaaattgaggtgtaccggtactcctgct 40054944  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 26423842 - 26423886
Alignment:
Q  140 gggacttctacggtacacctcataaattgaactgcaccggtactc 184  Q
    |||||||||||||||||||||||||||| |  || ||||||||||    
T  26423842 gggacttctacggtacacctcataaattaaggtgtaccggtactc 26423886  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 197
Target Start/End: Complemental strand, 12801507 - 12801454
Alignment:
Q  144 cttctacggtacacctcataaattgaactgcaccggtactcttgctatataaat 197  Q
    ||||||||||||||||||||||||||  || ||||||||||| ||| |||||||    
T  12801507 cttctacggtacacctcataaattgaggtgtaccggtactctcgctctataaat 12801454  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 197
Target Start/End: Original strand, 30777276 - 30777330
Alignment:
Q  143 acttctacggtacacctcataaattgaactgcaccggtactcttgctatataaat 197  Q
    |||||||||||||||||||||||||||  || |||| ||||| |||| |||||||    
T  30777276 acttctacggtacacctcataaattgaggtgtaccgatactcctgctttataaat 30777330  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 27800033 - 27800086
Alignment:
Q  144 cttctacggtacacctcataaattgaactgcaccggtactcttgctatataaat 197  Q
    ||||||||||||||||||||||||||  || ||||||||||| ||| |||||||    
T  27800033 cttctacggtacacctcataaattgaggtgtaccggtactctcgctctataaat 27800086  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 197
Target Start/End: Complemental strand, 2089265 - 2089211
Alignment:
Q  143 acttctacggtacacctcataaattgaactgcaccggtactcttgctatataaat 197  Q
    ||||||||||||||||| ||||| |||  || ||||||||||||||| |||||||    
T  2089265 acttctacggtacacctaataaaatgaggtgtaccggtactcttgctttataaat 2089211  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 189
Target Start/End: Original strand, 29688928 - 29688974
Alignment:
Q  143 acttctacggtacacctcataaattgaactgcaccggtactcttgct 189  Q
    |||||||||||||||||||||||||||  || |||||||||| ||||    
T  29688928 acttctacggtacacctcataaattgaggtgtaccggtactcctgct 29688974  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 1343426 - 1343382
Alignment:
Q  140 gggacttctacggtacacctcataaattgaactgcaccggtactc 184  Q
    ||||||||||||||||||| ||||||||||  || ||||||||||    
T  1343426 gggacttctacggtacaccacataaattgagatgtaccggtactc 1343382  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 183
Target Start/End: Original strand, 8159642 - 8159682
Alignment:
Q  143 acttctacggtacacctcataaattgaactgcaccggtact 183  Q
    |||||||||||||||||||||||||||| ||  ||||||||    
T  8159642 acttctacggtacacctcataaattgaagtgtgccggtact 8159682  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 21919682 - 21919738
Alignment:
Q  133 aatatatgggacttctacggtacacctcataaattgaactgcaccggtactcttgct 189  Q
    |||||| || ||||||||||||||||||| |||||||  || |||||||||| ||||    
T  21919682 aatatagggaacttctacggtacacctcacaaattgaggtgtaccggtactcctgct 21919738  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 43542182 - 43542138
Alignment:
Q  143 acttctacggtacacctcataaattgaactgcaccggtactcttg 187  Q
    |||||||||||||||||||||||||||  |||| || ||||||||    
T  43542182 acttctacggtacacctcataaattgaggtgcatcgatactcttg 43542138  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 11510718 - 11510762
Alignment:
Q  140 gggacttctacggtacacctcataaattgaactgcaccggtactc 184  Q
    |||||||||||| |||||||||||||||||  |||||||||||||    
T  11510718 gggacttctacgatacacctcataaattgaggtgcaccggtactc 11510762  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 169
Target Start/End: Complemental strand, 4393552 - 4393523
Alignment:
Q  140 gggacttctacggtacacctcataaattga 169  Q
    ||||||||||||||||||||||||||||||    
T  4393552 gggacttctacggtacacctcataaattga 4393523  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 169
Target Start/End: Original strand, 24105151 - 24105180
Alignment:
Q  140 gggacttctacggtacacctcataaattga 169  Q
    ||||||||||||||||||||||||||||||    
T  24105151 gggacttctacggtacacctcataaattga 24105180  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 52776453 - 52776494
Alignment:
Q  143 acttctacggtacacctcataaattgaactgcaccggtactc 184  Q
    |||||||||||||||||||||||||||  || ||||||||||    
T  52776453 acttctacggtacacctcataaattgaggtgtaccggtactc 52776494  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 189
Target Start/End: Complemental strand, 1706008 - 1705962
Alignment:
Q  143 acttctacggtacacctcataaattgaactgcaccggtactcttgct 189  Q
    |||||||||||||||||||||||||||  || |||||||||| ||||    
T  1706008 acttctacggtacacctcataaattgaggtgtaccggtactcctgct 1705962  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 189
Target Start/End: Complemental strand, 14508023 - 14507977
Alignment:
Q  143 acttctacggtacacctcataaattgaactgcaccggtactcttgct 189  Q
    |||||||||||||||||||||||||||  || |||||||||| ||||    
T  14508023 acttctacggtacacctcataaattgaggtgtaccggtactcctgct 14507977  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 189
Target Start/End: Complemental strand, 19474074 - 19474028
Alignment:
Q  143 acttctacggtacacctcataaattgaactgcaccggtactcttgct 189  Q
    ||||||||||||||||||| |||||||  || |||||||||||||||    
T  19474074 acttctacggtacacctcacaaattgaggtgtaccggtactcttgct 19474028  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 10887813 - 10887854
Alignment:
Q  143 acttctacggtacacctcataaattgaactgcaccggtactc 184  Q
    |||||||||||||||||||||||||||  || ||||||||||    
T  10887813 acttctacggtacacctcataaattgaggtgtaccggtactc 10887854  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 7344322 - 7344366
Alignment:
Q  140 gggacttctacggtacacctcataaattgaactgcaccggtactc 184  Q
    ||||||||||||||||||| ||||||||||  || ||||||||||    
T  7344322 gggacttctacggtacaccacataaattgaggtgtaccggtactc 7344366  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 169
Target Start/End: Complemental strand, 19189513 - 19189484
Alignment:
Q  140 gggacttctacggtacacctcataaattga 169  Q
    ||||||||||||||||||||||||||||||    
T  19189513 gggacttctacggtacacctcataaattga 19189484  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 4491258 - 4491217
Alignment:
Q  143 acttctacggtacacctcataaattgaactgcaccggtactc 184  Q
    |||||||||||||||||||||||||||  || ||||||||||    
T  4491258 acttctacggtacacctcataaattgaggtgtaccggtactc 4491217  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 4695710 - 4695669
Alignment:
Q  143 acttctacggtacacctcataaattgaactgcaccggtactc 184  Q
    ||||||| |||||||||||||||||||  |||||||||||||    
T  4695710 acttctagggtacacctcataaattgaggtgcaccggtactc 4695669  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 169
Target Start/End: Original strand, 9579665 - 9579694
Alignment:
Q  140 gggacttctacggtacacctcataaattga 169  Q
    ||||||||||||||||||||||||||||||    
T  9579665 gggacttctacggtacacctcataaattga 9579694  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 169
Target Start/End: Original strand, 9585360 - 9585389
Alignment:
Q  140 gggacttctacggtacacctcataaattga 169  Q
    ||||||||||||||||||||||||||||||    
T  9585360 gggacttctacggtacacctcataaattga 9585389  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 169
Target Start/End: Original strand, 18051775 - 18051804
Alignment:
Q  140 gggacttctacggtacacctcataaattga 169  Q
    ||||||||||||||||||||||||||||||    
T  18051775 gggacttctacggtacacctcataaattga 18051804  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 234
Target Start/End: Complemental strand, 19627912 - 19627871
Alignment:
Q  193 taaataattagttgcttgtcaatacttatattttagaaaaca 234  Q
    |||||||||||||  ||||||||| |||||||||||||||||    
T  19627912 taaataattagttatttgtcaatatttatattttagaaaaca 19627871  T

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