View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10719_low_39 (Length: 236)

Name: NF10719_low_39
Description: NF10719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10719_low_39
NF10719_low_39
[»] chr1 (5 HSPs)
chr1 (9-218)||(47627123-47627332)
chr1 (46-200)||(47584262-47584416)
chr1 (46-182)||(47574562-47574698)
chr1 (66-188)||(47593025-47593147)
chr1 (38-95)||(6525231-6525288)
[»] chr3 (1 HSPs)
chr3 (20-188)||(36067065-36067233)
[»] chr6 (2 HSPs)
chr6 (22-191)||(21968250-21968419)
chr6 (58-176)||(22086149-22086267)
[»] chr5 (3 HSPs)
chr5 (46-131)||(28829061-28829146)
chr5 (46-185)||(28854668-28854807)
chr5 (46-185)||(28860026-28860165)
[»] chr2 (1 HSPs)
chr2 (125-185)||(2662479-2662539)


Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 9 - 218
Target Start/End: Original strand, 47627123 - 47627332
Alignment:
Q  9 gaagcaaaggcaattaacttggcctgaacggtataatatcattaaagggattgctcgaggaattctttaccttcatgaagattctcgtctcaagattata 108  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47627123 gaagcaaaagcaattaacttggcctgaacggtataatatcattaaagggattgctcgaggaattctttaccttcatgaagattctcgtctcaagattata 47627222  T
Q  109 caccgtgatattaaaccaagcaatgttcttctagataacaatatgaatccaaaaatctctgattttggcatggcaaggatggtagctatagaacaagttc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47627223 caccgtgatattaaaccaagcaatgttcttctagataacaatatgaatccaaaaatctctgattttggcatggcaaggatggtagctatagaacaagttc 47627322  T
Q  209 aaggacatac 218  Q
    ||||||||||    
T  47627323 aaggacatac 47627332  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 46 - 200
Target Start/End: Original strand, 47584262 - 47584416
Alignment:
Q  46 atcattaaagggattgctcgaggaattctttaccttcatgaagattctcgtctcaagattatacaccgtgatattaaaccaagcaatgttcttctagata 145  Q
    ||||| ||||| ||||| || |||||||||||||| |||||||||||||| ||||| || ||||| |||||| ||||||| ||||||||  |  ||||||    
T  47584262 atcatcaaaggaattgcccgtggaattctttacctccatgaagattctcgcctcaaaataatacatcgtgatcttaaacctagcaatgtcttattagata 47584361  T
Q  146 acaatatgaatccaaaaatctctgattttggcatggcaaggatggtagctataga 200  Q
      || ||||| |||||||| || |||||||||||||| || || ||| |||||||    
T  47584362 gtaacatgaacccaaaaatatcagattttggcatggctagaattgtatctataga 47584416  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 46 - 182
Target Start/End: Original strand, 47574562 - 47574698
Alignment:
Q  46 atcattaaagggattgctcgaggaattctttaccttcatgaagattctcgtctcaagattatacaccgtgatattaaaccaagcaatgttcttctagata 145  Q
    ||||| |||||  |||| || ||||||||||| || |||||||||||||| ||||| || ||||| |||||| | ||||| ||| |||| ||  |||||     
T  47574562 atcatcaaaggagttgcccgtggaattctttatctccatgaagattctcgcctcaaaatcatacatcgtgatctgaaacctagcgatgtcctgttagatg 47574661  T
Q  146 acaatatgaatccaaaaatctctgattttggcatggc 182  Q
      ||||||||||||||||| || ||||||||||||||    
T  47574662 gtaatatgaatccaaaaatatcagattttggcatggc 47574698  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 66 - 188
Target Start/End: Original strand, 47593025 - 47593147
Alignment:
Q  66 aggaattctttaccttcatgaagattctcgtctcaagattatacaccgtgatattaaaccaagcaatgttcttctagataacaatatgaatccaaaaatc 165  Q
    ||||||||||||  | |||||| |||||||||||||  ||||||| || ||| | ||||| || |||||||| || ||| | ||||||||||| |||||     
T  47593025 aggaattctttatttgcatgaatattctcgtctcaaagttatacatcgggatctcaaacctagtaatgttctactggatgaaaatatgaatcctaaaata 47593124  T
Q  166 tctgattttggcatggcaaggat 188  Q
    || |||||||| ||||| |||||    
T  47593125 tcagattttggaatggctaggat 47593147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 6525231 - 6525288
Alignment:
Q  38 ggtataatatcattaaagggattgctcgaggaattctttaccttcatgaagattctcg 95  Q
    ||||||| ||||||  ||| | ||||||||||||||||||||||||||| ||||||||    
T  6525231 ggtataaaatcattgtaggtactgctcgaggaattctttaccttcatgaggattctcg 6525288  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 188
Target Start/End: Complemental strand, 36067233 - 36067065
Alignment:
Q  20 aattaacttggcctgaacggtataatatcattaaagggattgctcgaggaattctttaccttcatgaagattctcgtctcaagattatacaccgtgatat 119  Q
    |||||||||||| || ||| || || || || | ||||||||| ||||| |||||||| || ||||| ||||||| ||| || || |||||| ||||| |    
T  36067233 aattaacttggcatgcacgctacaagattataagagggattgcacgaggtattctttatctacatgaggattctcatctaaaaatcatacactgtgatct 36067134  T
Q  120 taaaccaagcaatgttcttctagataacaatatgaatccaaaaatctctgattttggcatggcaaggat 188  Q
    |||||| |||||  || |  | ||| |||| |||||| |||| || || ||||||||| ||||||||||    
T  36067133 taaacccagcaacattttgttggatgacaaaatgaatgcaaagatatcagattttggcttggcaaggat 36067065  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 191
Target Start/End: Complemental strand, 21968419 - 21968250
Alignment:
Q  22 ttaacttggcctgaacggtataatatcattaaagggattgctcgaggaattctttaccttcatgaagattctcgtctcaagattatacaccgtgatatta 121  Q
    |||||||||  |||||| | ||| ||||||  ||| ||||||||||||||||||||  | |||||  ||||||| |||||  ||||||| || ||| | |    
T  21968419 ttaacttgggttgaacgctttaacatcattggaggaattgctcgaggaattctttatttgcatgagcattctcgactcaaagttatacatcgcgatctca 21968320  T
Q  122 aaccaagcaatgttcttctagataacaatatgaatccaaaaatctctgattttggcatggcaaggatggt 191  Q
    |||| || ||| ||||  ||||| | ||||||| ||| ||||| || ||||||||  ||||| |||||||    
T  21968319 aacctagtaatattctattagatgaaaatatgattcctaaaatttcagattttggtttggcacggatggt 21968250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 176
Target Start/End: Complemental strand, 22086267 - 22086149
Alignment:
Q  58 attgctcgaggaattctttaccttcatgaagattctcgtctcaagattatacaccgtgatattaaaccaagcaatgttcttctagataacaatatgaatc 157  Q
    |||||| |||||||||||||  | |||||| ||||||| |||||  ||||||| |||||| | |||||||| ||| ||||  ||||| | ||||||| ||    
T  22086267 attgctggaggaattctttatttgcatgaacattctcgactcaaagttatacatcgtgatctcaaaccaagtaatattctattagatgaaaatatgattc 22086168  T
Q  158 caaaaatctctgattttgg 176  Q
    | | ||| || ||||||||    
T  22086167 ctagaatttcagattttgg 22086149  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 131
Target Start/End: Complemental strand, 28829146 - 28829061
Alignment:
Q  46 atcattaaagggattgctcgaggaattctttaccttcatgaagattctcgtctcaagattatacaccgtgatattaaaccaagcaa 131  Q
    |||||| |||| ||| |||||||  ||||||| ||||||||||||||||| ||    ||||||||||||||| ||||| |||||||    
T  28829146 atcattcaaggtattactcgaggtgttctttatcttcatgaagattctcgactacgcattatacaccgtgatcttaaagcaagcaa 28829061  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 185
Target Start/End: Complemental strand, 28854807 - 28854668
Alignment:
Q  46 atcattaaagggattgctcgaggaattctttaccttcatgaagattctcgtctcaagattatacaccgtgatattaaaccaagcaatgttcttctagata 145  Q
    ||||||||||| |||||||||||  |||| || |||||||| |||||||| ||    ||||||||||||||| | ||| || ||||| ||||  |||||     
T  28854807 atcattaaaggtattgctcgaggtgttctctatcttcatgaggattctcgactacgcattatacaccgtgatctcaaagcaggcaatattctcttagatg 28854708  T
Q  146 acaatatgaatccaaaaatctctgattttggcatggcaag 185  Q
    | || |||||| | || || || ||||| |||||||||||    
T  28854707 aaaacatgaatgctaagatatcagatttcggcatggcaag 28854668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 185
Target Start/End: Complemental strand, 28860165 - 28860026
Alignment:
Q  46 atcattaaagggattgctcgaggaattctttaccttcatgaagattctcgtctcaagattatacaccgtgatattaaaccaagcaatgttcttctagata 145  Q
    |||||| |||| |||||||||||  |||||||||||||||| |||||||| ||    ||||||||||| ||| | ||| |||||||  |||| |||||      
T  28860165 atcattcaaggtattgctcgaggcgttctttaccttcatgaggattctcgactgcgtattatacaccgcgatctcaaagcaagcaacattctcctagacg 28860066  T
Q  146 acaatatgaatccaaaaatctctgattttggcatggcaag 185  Q
    |  | |||||| | || || || |||||||||||||||||    
T  28860065 aagacatgaatgctaagatttcagattttggcatggcaag 28860026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 185
Target Start/End: Complemental strand, 2662539 - 2662479
Alignment:
Q  125 caagcaatgttcttctagataacaatatgaatccaaaaatctctgattttggcatggcaag 185  Q
    |||||||||||||| |||||  | | |||||||||||||| ||||| ||||| ||||||||    
T  2662539 caagcaatgttcttttagatggcgaaatgaatccaaaaatttctgactttggaatggcaag 2662479  T

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