View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10719_low_4 (Length: 444)
Name: NF10719_low_4
Description: NF10719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10719_low_4 |
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| [»] scaffold0077 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 406; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Complemental strand, 46221388 - 46220964
Alignment:
| Q |
1 |
gagagaaggaaggttggggaaacggcggcgtttggcagaaggagattttgatgggaggaaagtgtgagccgttggatttctccggtgtgatttactacga |
100 |
Q |
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| T |
46221388 |
gagagaaggaaggttggggaaacggcggcgtttggcagaaggagattttgatgggaggaaagtgtgagccgttggatttctccggtgtgatttactacga |
46221289 |
T |
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| Q |
101 |
tattaacgggaaacagacgcgtgaagttccgatcaggtctccacgcgctagtcctttgcctggatatctcacgcgcggttgaattcaatcgctaaattct |
200 |
Q |
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| T |
46221288 |
tattaacgggaaacagacgcgtgaagttccgatcaggtctccacgcgctagtcctttgcctggatatctcacgcgcggttgaattcaatcgctaaattct |
46221189 |
T |
|
| Q |
201 |
aggtttgctagggagttgatgaaattactagattgatatgcacgtgatctgtgatcgatcgcacgtgtatttttagatttacttcgtgtttttgcttata |
300 |
Q |
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| T |
46221188 |
aggtttgttagggagttgatgaaattactagattgatatgcacgtgatctgtgatcgatcgcacgtgtatttttagatttacttcgtgtttttgcttata |
46221089 |
T |
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| Q |
301 |
agaattgaaaattttagaattaatagcgtgtgtttgtttgttagttgatgatgaaaactatacaatttgtataaagttaatgcgattttagtgaaagatc |
400 |
Q |
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| T |
46221088 |
agaattgaaaa-tttagaattaatagagtgtgtttgtttgttagttgatgatgaaaactatacaatttgtataaagttaatgcgatttaagtgaaagatc |
46220990 |
T |
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| Q |
401 |
tttgaatttttctaattgggaagttt |
426 |
Q |
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| T |
46220989 |
tttgaatttttctaattgggaagttt |
46220964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 20 - 157
Target Start/End: Original strand, 29830997 - 29831134
Alignment:
| Q |
20 |
aaacggcggcgtttggcagaaggagattttgatgggaggaaagtgtgagccgttggatttctccggtgtgatttactacgatattaacgggaaacagacg |
119 |
Q |
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| T |
29830997 |
aaacgacggtgtttggcagaaggagatattgatgggaggaaaatgtgagccgttggatttctcaggcgttattcattatgatattaacggaagacaaacc |
29831096 |
T |
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| Q |
120 |
cgtgaagttccgatcaggtctccacgcgctagtccttt |
157 |
Q |
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| T |
29831097 |
ggtgaagttcctctcaggtctccacgcgctattccttt |
29831134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0077 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0077
Description:
Target: scaffold0077; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 116
Target Start/End: Complemental strand, 10521 - 10435
Alignment:
| Q |
30 |
gtttggcagaaggagattttgatgggaggaaagtgtgagccgttggatttctccggtgtgatttactacgatattaacgggaaacag |
116 |
Q |
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| T |
10521 |
gtttggcagaaaacgatcttgatgggtgataagtgtgaaccgttggatttctctggtgtgatttattatgacaataaggggaaacag |
10435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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