View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10719_low_42 (Length: 231)
Name: NF10719_low_42
Description: NF10719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10719_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 13 - 215
Target Start/End: Complemental strand, 27105615 - 27105413
Alignment:
| Q |
13 |
gatgaaggaaagtggaggtataaggttcacaacttttgaatcaattgcaggttatgtgtggagatcaagagcaagagccttaaaacttaacaacaatggt |
112 |
Q |
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| T |
27105615 |
gatgaaggaaagtggaggtataaggttcacaacttttgaatcaattgcaggttatgtgtggagatcaagagcaagagccttaaaacttaacaacaatggt |
27105516 |
T |
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| Q |
113 |
gaaacagtgttgaccattgtaactggtattagacgcaagttgaaggattttgaacctttacctaatggttattatgggaattcatgtgttgatgcaaaca |
212 |
Q |
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| T |
27105515 |
gaaacagtgttgaccattgtagctggtattagacgcaagttgaaggattttgaacctttacctaatggttattatgggaattcatgtgttgatgcaaaca |
27105416 |
T |
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| Q |
213 |
ctg |
215 |
Q |
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||| |
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| T |
27105415 |
ctg |
27105413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 13 - 215
Target Start/End: Complemental strand, 27098616 - 27098414
Alignment:
| Q |
13 |
gatgaaggaaagtggaggtataaggttcacaacttttgaatcaattgcaggttatgtgtggagatcaagagcaagagccttaaaacttaacaacaatggt |
112 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
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| T |
27098616 |
gatgaaggaaagtggaaatataaggttcacaacttttgaatcaattgcaggttatgtttggagatcaagagcaagagccttaaaacttaacagcaatggt |
27098517 |
T |
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| Q |
113 |
gaaacagtgttgaccattgtaactggtattagacgcaagttgaaggattttgaacctttacctaatggttattatgggaattcatgtgttgatgcaaaca |
212 |
Q |
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| T |
27098516 |
gaaacagtactgaccattgtagcaggtattagacgcaacttgaaggattttgatcctttacctaatggttattatgggaattcatgtgttgatgcaaaca |
27098417 |
T |
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| Q |
213 |
ctg |
215 |
Q |
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||| |
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| T |
27098416 |
ctg |
27098414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 32 - 195
Target Start/End: Complemental strand, 27056765 - 27056603
Alignment:
| Q |
32 |
ataaggttcacaacttttgaatcaattgcaggttatgtgtggagatcaagagcaagagccttaaaacttaacaacaatggtgaaacagtgttgaccattg |
131 |
Q |
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|||||||||||||||||||| | | ||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
27056765 |
ataaggttcacaacttttgagt-acttgcaggttatgtgtagaggtcaagagcaagagccttaaaacttaacagcaatggtgaaacagtgctgaccattg |
27056667 |
T |
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| Q |
132 |
taactggtattagacgcaagttgaaggattttgaacctttacctaatggttattatgggaattc |
195 |
Q |
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| T |
27056666 |
cagttggtattagacgcaacttggaggattatgatactttacctaaagggtaatatggaaattc |
27056603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 35 - 131
Target Start/End: Complemental strand, 27041450 - 27041354
Alignment:
| Q |
35 |
aggttcacaacttttgaatcaattgcaggttatgtgtggagatcaagagcaagagccttaaaacttaacaacaatggtgaaacagtgttgaccattg |
131 |
Q |
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| T |
27041450 |
aggttcacaacttttgaagtgcttgcaggttatgtgtggaggtcaagagcaagagccttaaaacttaacagcaatggtgaaacagtgttgaccattg |
27041354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 31 - 195
Target Start/End: Complemental strand, 27085932 - 27085768
Alignment:
| Q |
31 |
tataaggttcacaacttttgaatcaattgcaggttatgtgtggagatcaagagcaagagccttaaaacttaacaacaatggtgaaacagtgttgaccatt |
130 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| | ||||||| ||||| | | |||||| |
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| T |
27085932 |
tataaggttcacaacttttgaagtgcttgcaggttatgtgtggaggtcaagagcaagagccttaaaacttaaaagcaatggtttaacagcgctaaccatt |
27085833 |
T |
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| Q |
131 |
gtaactggtattagacgcaagttgaaggattttgaacctttacctaatggttattatgggaattc |
195 |
Q |
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| T |
27085832 |
gcagttggtagtagacgcaacttaaaggattatgatactttacctaaagggtattatgggaattc |
27085768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 31 - 110
Target Start/End: Complemental strand, 27062809 - 27062730
Alignment:
| Q |
31 |
tataaggttcacaacttttgaatcaattgcaggttatgtgtggagatcaagagcaagagccttaaaacttaacaacaatg |
110 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| || ||||| |
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| T |
27062809 |
tataaggttcacaacttttgaagtgcttgcaggttatgtgtggaggtcaagagcaagagccttaaaacttagcagcaatg |
27062730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 36 - 195
Target Start/End: Complemental strand, 27069871 - 27069712
Alignment:
| Q |
36 |
ggttcacaacttttgaatcaattgcaggttatgtgtggagatcaagagcaagagccttaaaacttaacaacaatggtgaaacagtgttgaccattgtaac |
135 |
Q |
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|||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||| || ||||| | ||||| || ||| || || |
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| T |
27069871 |
ggtttacaacttttgaagttcttgcaggttatgtgtggaggtcaagagcaagagccttaaagcttagcagcaatgataaaacaatgctgaatatgttagt |
27069772 |
T |
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| Q |
136 |
tggtattagacgcaagttgaaggattttgaacctttacctaatggttattatgggaattc |
195 |
Q |
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|||||| ||||| || |||| ||||||||| ||||||| || || ||||| |||||||| |
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| T |
27069771 |
tggtatgagacgtaacttgatggattttgatactttaccgaaagggtattacgggaattc |
27069712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 125
Target Start/End: Complemental strand, 27045834 - 27045773
Alignment:
| Q |
64 |
ttatgtgtggagatcaagagcaagagccttaaaacttaacaacaatggtgaaacagtgttga |
125 |
Q |
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|||||||||||| |||||||||||||||||| |||||| ||||||||| ||||| |||||| |
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| T |
27045834 |
ttatgtgtggaggtcaagagcaagagccttacaacttagcaacaatggaaaaacaatgttga |
27045773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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