View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10719_low_46 (Length: 226)
Name: NF10719_low_46
Description: NF10719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10719_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 36379177 - 36378971
Alignment:
| Q |
1 |
aattattcaaaacaaatgaatgtgagaagaagagaataaaagagcatttatggattgggagagaagtgtgacacaggaaacttctacgtatacaaatcat |
100 |
Q |
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| T |
36379177 |
aattattcaaaacaaatgaatgtgagaagaagagaataaaagagcatttatggattgggagagaagtgtgacacaggaaacttctacgtatacaaatcat |
36379078 |
T |
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| Q |
101 |
-agagcccacatcgactagttcacaagtaaaaataattgt--tagagttataaattaagaggacttcttctacctttaccaaacacagagaagtggagcc |
197 |
Q |
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| T |
36379077 |
aagagcccacatcgactagttcacaagtaaaaataattgttatagagttataaattaagaggacttattctacctttaccaaacacagagatgtggagcc |
36378978 |
T |
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| Q |
198 |
acgaatg |
204 |
Q |
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||||||| |
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| T |
36378977 |
acgaatg |
36378971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 36370562 - 36370526
Alignment:
| Q |
9 |
aaaacaaatgaatgtgagaagaagagaataaaagagc |
45 |
Q |
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| T |
36370562 |
aaaacaaatgaatttgagaagaagagaataaaagagc |
36370526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 130
Target Start/End: Complemental strand, 36375924 - 36375873
Alignment:
| Q |
80 |
acttctacgtatacaaatcata-gagcccacatcgactagttcacaagtaaa |
130 |
Q |
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| T |
36375924 |
acttctatgtatacaaatcataagaacccacatcgaccagttcacaagtaaa |
36375873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 133
Target Start/End: Complemental strand, 36383268 - 36383216
Alignment:
| Q |
82 |
ttctacgtatacaaatcata-gagcccacatcgactagttcacaagtaaaaat |
133 |
Q |
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| T |
36383268 |
ttctatgtatacaaatcacaagagcccacatcgaccagttcacaggtaaaaat |
36383216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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