View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10719_low_5 (Length: 434)
Name: NF10719_low_5
Description: NF10719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10719_low_5 |
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| [»] scaffold0199 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Original strand, 23452324 - 23452746
Alignment:
| Q |
1 |
aggagattgatgaatggctacactagacctgagaaagaacttaaatgatttccaccctcttctgaaaacgccatgctaaatcctaaccaatttgctttta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23452324 |
aggagattgatgaatggctacactagacctgagaaagaacttaaatgatttccaccctcttctgaaaacgccatgctaaatcctaaccaatttgctttta |
23452423 |
T |
|
| Q |
101 |
cgtaccaaactcttgaggaaaaaacagacattcaaaactaggtgatcaacggatttcccctcaccataacca----ctaacgcaaacttgatcattattc |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
23452424 |
cgtaccaaactcttgaggaaaaaacagacattcaaaactaggtgatcaacggatttcccctcaccataaccaaccactaacgcaaacttgatcatta--- |
23452520 |
T |
|
| Q |
197 |
attactatccataatcccccacctctcaaaattagctctgggtggaacttttttaagatcgttccccctttgcaatatagaattaaatttaaaca---tg |
293 |
Q |
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| T |
23452521 |
----ctatccataatcccccacctcgcaaaattagctctgggtggaacttttttaagatcgttccccctttgcaatatagaattaaatttaaacaatatg |
23452616 |
T |
|
| Q |
294 |
ttgatatatccttgagctggatatagaatcaacacagcatgtgattctctctctggctcacctctgaactatcgtgtgtgaatgttaagatggtatgtg- |
392 |
Q |
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| T |
23452617 |
ttgatatatccttgagctggatatagaatcaacacagcatgtgattctctctctggctcacctctgaactatcgtgtgtgaatgttaagatggtatgtgc |
23452716 |
T |
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| Q |
393 |
----aagacagtatataagcttgtgctttt |
418 |
Q |
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| T |
23452717 |
ttaaaagacagtatataagcttgtgctttt |
23452746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 354
Target Start/End: Complemental strand, 23869664 - 23869576
Alignment:
| Q |
269 |
caatatagaattaaatttaaaca---tgttgatatatccttgagctggatatagaatcaacacagcatgtgattctctctctggctcac |
354 |
Q |
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| T |
23869664 |
caatatagaattaagtttgaacaatgtattcatatatccttgagcttgacacagaatcatcacatcatgtgattttctctctagctcac |
23869576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 336
Target Start/End: Complemental strand, 4258793 - 4258751
Alignment:
| Q |
294 |
ttgatatatccttgagctggatatagaatcaacacagcatgtg |
336 |
Q |
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| T |
4258793 |
ttgatatggccttgagctggatatggaatcaacacagcatgtg |
4258751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 336
Target Start/End: Original strand, 1282944 - 1282986
Alignment:
| Q |
294 |
ttgatatatccttgagctggatatagaatcaacacagcatgtg |
336 |
Q |
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| T |
1282944 |
ttgatatggccttgagctggatatggaatcaacacagcatgtg |
1282986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 339
Target Start/End: Original strand, 1269 - 1314
Alignment:
| Q |
294 |
ttgatatatccttgagctggatatagaatcaacacagcatgtgatt |
339 |
Q |
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||||||| ||||||||||||||| |||| |||||||||||||||| |
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| T |
1269 |
ttgatatggccttgagctggatatggaatgaacacagcatgtgatt |
1314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 339
Target Start/End: Original strand, 1676032 - 1676077
Alignment:
| Q |
294 |
ttgatatatccttgagctggatatagaatcaacacagcatgtgatt |
339 |
Q |
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||||||| ||||||||||||||| |||| |||||||||||||||| |
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| T |
1676032 |
ttgatatggccttgagctggatatggaatgaacacagcatgtgatt |
1676077 |
T |
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