View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10719_low_51 (Length: 217)
Name: NF10719_low_51
Description: NF10719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10719_low_51 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 38013066 - 38013282
Alignment:
| Q |
1 |
aggcattgtattccacaccctaaaactaccatatatgcctatatatacgtatgccaagtaagctcaatgagtagcaacaagtaattgaaacacatgatac |
100 |
Q |
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| T |
38013066 |
aggcattgtattccacaccctaaaactaccatatctgcctatatatacgtatcccaagtaagctcaatgagtagcaacaagtaattgaaacacatgatac |
38013165 |
T |
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| Q |
101 |
catcaaccatgaacttcacctcatgcatatcccttctactcatgatcctaaccacaaatcacttcattacttcacactcagaaaactgcaacccagatga |
200 |
Q |
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| T |
38013166 |
catcaaccatgaacttcacctcatgcatataccttctactcataatcctaaccacaaatcacttcattccttcacactcagaaaactgcaacccagatga |
38013265 |
T |
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| Q |
201 |
caaaagaaccctactcc |
217 |
Q |
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| T |
38013266 |
caaaagaaccctactcc |
38013282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 73 - 217
Target Start/End: Original strand, 37989421 - 37989565
Alignment:
| Q |
73 |
agcaacaagtaattgaaacacatgataccatcaaccatgaacttcacctcatgcatatcccttctactcatgatcctaaccacaaatcacttcattactt |
172 |
Q |
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| T |
37989421 |
agcaacaagtaattgaaacacatgataccatcaaccatgaacttcacctcatgcatataccttctactcataatcctaaccacaaatcacttcattcttt |
37989520 |
T |
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| Q |
173 |
cacactcagaaaactgcaacccagatgacaaaagaaccctactcc |
217 |
Q |
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| T |
37989521 |
cacactcagaaaactgcaacccagatgacaaaagaaccctactcc |
37989565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 212
Target Start/End: Original strand, 37993630 - 37993750
Alignment:
| Q |
92 |
acatgataccatcaaccatgaacttcacctcatgcatatcccttctactcatgatcctaaccacaaatcacttcattacttcacactcagaaaactgcaa |
191 |
Q |
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| T |
37993630 |
acatgatatcatcaacaatgaagtttccctcatgcatattacttctcctcctaatcctaaccacacatcttttcattccttcactctcagaacaatgcaa |
37993729 |
T |
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| Q |
192 |
cccagatgacaaaagaaccct |
212 |
Q |
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||| ||||||||| |||||| |
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| T |
37993730 |
tccacatgacaaaaaaaccct |
37993750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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