View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10719_low_7 (Length: 398)

Name: NF10719_low_7
Description: NF10719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10719_low_7
NF10719_low_7
[»] chr7 (31 HSPs)
chr7 (18-393)||(12358532-12358910)
chr7 (91-269)||(5312679-5312858)
chr7 (78-260)||(3268868-3269051)
chr7 (115-265)||(18496631-18496782)
chr7 (90-269)||(30405637-30405815)
chr7 (108-269)||(24596897-24597059)
chr7 (78-269)||(29544548-29544741)
chr7 (78-237)||(20461573-20461733)
chr7 (92-269)||(1074495-1074674)
chr7 (92-265)||(9801772-9801946)
chr7 (78-238)||(1255137-1255299)
chr7 (90-205)||(17881457-17881572)
chr7 (92-269)||(23124943-23125122)
chr7 (110-269)||(20470703-20470864)
chr7 (92-270)||(9761308-9761487)
chr7 (90-269)||(7372461-7372640)
chr7 (92-190)||(8309005-8309103)
chr7 (78-169)||(7815352-7815443)
chr7 (214-269)||(21545720-21545775)
chr7 (119-200)||(7326834-7326915)
chr7 (109-235)||(7142158-7142286)
chr7 (78-269)||(22532538-22532729)
chr7 (90-153)||(4977831-4977894)
chr7 (215-269)||(14649663-14649717)
chr7 (112-164)||(2632436-2632488)
chr7 (90-161)||(37144961-37145032)
chr7 (130-180)||(2353229-2353279)
chr7 (78-160)||(21545803-21545885)
chr7 (115-205)||(4828857-4828945)
chr7 (214-269)||(7494863-7494917)
chr7 (92-159)||(10292797-10292864)
[»] chr8 (33 HSPs)
chr8 (78-268)||(29291800-29291990)
chr8 (90-249)||(30543802-30543962)
chr8 (91-269)||(5153800-5153979)
chr8 (82-269)||(6888086-6888271)
chr8 (103-270)||(14424705-14424873)
chr8 (90-259)||(28074555-28074724)
chr8 (78-180)||(10867017-10867119)
chr8 (78-269)||(28291994-28292185)
chr8 (90-269)||(11437460-11437641)
chr8 (90-263)||(30850999-30851173)
chr8 (78-192)||(27097771-27097887)
chr8 (89-190)||(28260263-28260364)
chr8 (95-190)||(31436525-31436620)
chr8 (109-269)||(16052170-16052332)
chr8 (78-180)||(24584707-24584810)
chr8 (109-265)||(24696641-24696799)
chr8 (105-196)||(12774810-12774902)
chr8 (148-269)||(13583413-13583535)
chr8 (78-269)||(32239316-32239509)
chr8 (109-170)||(35135416-35135477)
chr8 (115-269)||(22894425-22894579)
chr8 (128-269)||(28859132-28859275)
chr8 (79-169)||(5570136-5570226)
chr8 (78-171)||(41505530-41505623)
chr8 (78-265)||(12956518-12956698)
chr8 (78-269)||(28901243-28901426)
chr8 (150-196)||(12357574-12357620)
chr8 (150-196)||(12358702-12358748)
chr8 (109-163)||(13081938-13081992)
chr8 (89-190)||(16054334-16054436)
chr8 (117-175)||(31232124-31232182)
chr8 (78-135)||(28902118-28902175)
chr8 (214-269)||(11310149-11310203)
[»] chr5 (33 HSPs)
chr5 (90-269)||(20694681-20694861)
chr5 (66-269)||(26070491-26070695)
chr5 (89-269)||(7742763-7742944)
chr5 (78-262)||(24410830-24411015)
chr5 (78-261)||(25594593-25594778)
chr5 (109-197)||(25367654-25367742)
chr5 (126-269)||(11274223-11274368)
chr5 (111-265)||(18178162-18178319)
chr5 (78-265)||(16634075-16634264)
chr5 (86-269)||(26329963-26330146)
chr5 (105-192)||(30790832-30790919)
chr5 (126-265)||(11997790-11997932)
chr5 (90-238)||(19763817-19763964)
chr5 (78-269)||(17027556-17027748)
chr5 (78-268)||(24841782-24841973)
chr5 (78-191)||(19331540-19331651)
chr5 (92-180)||(29150890-29150977)
chr5 (78-269)||(20083494-20083688)
chr5 (78-161)||(25680625-25680708)
chr5 (152-269)||(30072218-30072337)
chr5 (90-255)||(15697245-15697410)
chr5 (109-180)||(16603596-16603668)
chr5 (78-216)||(15205672-15205811)
chr5 (78-169)||(18222522-18222613)
chr5 (94-160)||(23157792-23157858)
chr5 (114-269)||(16622570-16622717)
chr5 (92-265)||(22229847-22230021)
chr5 (215-269)||(17695356-17695410)
chr5 (118-190)||(22754963-22755036)
chr5 (151-191)||(24279598-24279638)
chr5 (151-191)||(24382576-24382616)
chr5 (214-269)||(18452705-18452760)
chr5 (109-161)||(24517414-24517466)
[»] chr3 (33 HSPs)
chr3 (78-269)||(21829026-21829218)
chr3 (90-269)||(11474887-11475068)
chr3 (80-269)||(23908164-23908354)
chr3 (109-269)||(19219104-19219266)
chr3 (78-249)||(26387758-26387930)
chr3 (78-169)||(8402545-8402636)
chr3 (78-235)||(26297778-26297934)
chr3 (79-179)||(30493249-30493349)
chr3 (115-269)||(18474236-18474391)
chr3 (158-265)||(26418829-26418937)
chr3 (90-243)||(33577775-33577930)
chr3 (65-269)||(13911281-13911478)
chr3 (89-269)||(19285139-19285319)
chr3 (103-191)||(26797221-26797308)
chr3 (112-269)||(25883166-25883324)
chr3 (109-169)||(2729613-2729673)
chr3 (214-260)||(19263809-19263855)
chr3 (107-265)||(25919369-25919519)
chr3 (117-189)||(27415236-27415309)
chr3 (90-161)||(5632536-5632607)
chr3 (218-269)||(10341957-10342008)
chr3 (103-170)||(16970293-16970360)
chr3 (214-265)||(16970628-16970679)
chr3 (92-164)||(4780687-4780759)
chr3 (110-161)||(10341856-10341907)
chr3 (90-169)||(27374446-27374525)
chr3 (78-147)||(1475297-1475366)
chr3 (92-149)||(12409501-12409558)
chr3 (78-190)||(12573319-12573432)
chr3 (78-190)||(13549783-13549896)
chr3 (79-164)||(23007065-23007150)
chr3 (108-152)||(4775719-4775763)
chr3 (109-169)||(21017937-21017997)
[»] chr1 (35 HSPs)
chr1 (112-269)||(25727802-25727961)
chr1 (112-269)||(25736210-25736369)
chr1 (110-269)||(31313613-31313773)
chr1 (89-269)||(26102097-26102278)
chr1 (111-269)||(11769887-11770047)
chr1 (79-269)||(27461074-27461266)
chr1 (90-269)||(26854213-26854391)
chr1 (93-269)||(52271138-52271315)
chr1 (119-269)||(25730464-25730616)
chr1 (65-264)||(15298768-15298968)
chr1 (78-265)||(30675513-30675701)
chr1 (103-257)||(34381762-34381920)
chr1 (78-269)||(15416866-15417059)
chr1 (78-254)||(21548677-21548854)
chr1 (78-260)||(18795210-18795393)
chr1 (93-269)||(19257699-19257874)
chr1 (110-269)||(18300896-18301057)
chr1 (78-189)||(25126509-25126620)
chr1 (107-269)||(25494382-25494536)
chr1 (83-269)||(30781794-30781981)
chr1 (78-268)||(26657505-26657696)
chr1 (78-161)||(12810351-12810434)
chr1 (78-189)||(18391111-18391222)
chr1 (165-269)||(25373862-25373967)
chr1 (89-169)||(13807747-13807827)
chr1 (112-269)||(23223475-23223635)
chr1 (78-124)||(25965414-25965460)
chr1 (79-169)||(50047211-50047301)
chr1 (92-179)||(25266329-25266417)
chr1 (221-269)||(31319504-31319552)
chr1 (214-269)||(9328334-9328388)
chr1 (214-269)||(23519662-23519716)
chr1 (214-269)||(50047341-50047396)
chr1 (78-190)||(8247630-8247743)
chr1 (143-207)||(1174000-1174064)
[»] chr6 (21 HSPs)
chr6 (110-269)||(26499740-26499900)
chr6 (66-269)||(9943043-9943247)
chr6 (107-265)||(16439516-16439675)
chr6 (113-256)||(12972291-12972435)
chr6 (117-269)||(9396500-9396652)
chr6 (78-232)||(24617541-24617695)
chr6 (167-265)||(33638402-33638501)
chr6 (109-161)||(16527950-16528002)
chr6 (103-269)||(14924311-14924478)
chr6 (105-168)||(20495790-20495853)
chr6 (214-269)||(30355483-30355538)
chr6 (109-189)||(32930447-32930527)
chr6 (89-170)||(1755555-1755636)
chr6 (123-196)||(22559181-22559253)
chr6 (89-269)||(26512672-26512852)
chr6 (89-269)||(26517788-26517968)
chr6 (221-265)||(33638259-33638303)
chr6 (218-269)||(24618053-24618104)
chr6 (110-161)||(30355386-30355437)
chr6 (78-192)||(14768240-14768354)
chr6 (78-189)||(15998540-15998652)
[»] chr4 (34 HSPs)
chr4 (65-263)||(26159772-26159971)
chr4 (119-269)||(33519100-33519251)
chr4 (67-264)||(10576471-10576669)
chr4 (126-269)||(31859794-31859938)
chr4 (92-266)||(9288253-9288428)
chr4 (117-254)||(29437539-29437677)
chr4 (80-270)||(17339706-17339897)
chr4 (89-196)||(21167769-21167876)
chr4 (114-270)||(15192268-15192425)
chr4 (90-269)||(23353664-23353839)
chr4 (79-269)||(25315125-25315316)
chr4 (118-269)||(5676268-5676421)
chr4 (78-263)||(47024665-47024842)
chr4 (134-270)||(13064511-13064648)
chr4 (126-269)||(17187252-17187394)
chr4 (114-269)||(19601863-19602019)
chr4 (78-269)||(13275635-13275830)
chr4 (65-153)||(24925821-24925909)
chr4 (86-265)||(46647233-46647412)
chr4 (115-269)||(34864189-34864342)
chr4 (109-180)||(22119706-22119777)
chr4 (78-267)||(27302807-27302996)
chr4 (109-269)||(17026590-17026751)
chr4 (82-180)||(10320202-10320301)
chr4 (78-189)||(21077262-21077373)
chr4 (218-269)||(22119791-22119842)
chr4 (142-192)||(13206647-13206697)
chr4 (89-190)||(4732790-4732891)
chr4 (222-265)||(5906660-5906703)
chr4 (214-265)||(7024116-7024167)
chr4 (89-180)||(20044218-20044309)
chr4 (150-192)||(12243698-12243740)
chr4 (103-169)||(18444304-18444370)
chr4 (136-180)||(30624953-30624997)
[»] chr2 (31 HSPs)
chr2 (78-265)||(17152182-17152371)
chr2 (78-269)||(21848967-21849158)
chr2 (113-269)||(31262063-31262218)
chr2 (90-256)||(19541078-19541245)
chr2 (78-269)||(18236196-18236388)
chr2 (89-269)||(24047422-24047604)
chr2 (78-269)||(30998800-30998992)
chr2 (110-269)||(39730508-39730668)
chr2 (92-269)||(21505032-21505211)
chr2 (89-268)||(15454433-15454605)
chr2 (126-269)||(27417156-27417301)
chr2 (158-269)||(14921932-14922044)
chr2 (126-268)||(17415058-17415201)
chr2 (94-162)||(27917985-27918053)
chr2 (89-267)||(18117023-18117201)
chr2 (89-269)||(18818737-18818923)
chr2 (90-189)||(17240831-17240928)
chr2 (78-269)||(35707832-35708024)
chr2 (90-269)||(24188007-24188190)
chr2 (90-170)||(34063839-34063919)
chr2 (107-158)||(30705260-30705311)
chr2 (90-189)||(22388732-22388827)
chr2 (223-269)||(31274131-31274177)
chr2 (86-180)||(31449994-31450088)
chr2 (92-161)||(1733143-1733212)
chr2 (109-174)||(32276503-32276568)
chr2 (92-160)||(21843006-21843074)
chr2 (93-153)||(28278434-28278494)
chr2 (78-189)||(35031731-35031843)
chr2 (217-263)||(17884542-17884588)
chr2 (154-253)||(1732656-1732756)
[»] scaffold0171 (1 HSPs)
scaffold0171 (92-269)||(21440-21619)
[»] scaffold0188 (1 HSPs)
scaffold0188 (110-269)||(26848-27009)
[»] scaffold0190 (1 HSPs)
scaffold0190 (90-169)||(11692-11771)
[»] scaffold0386 (2 HSPs)
scaffold0386 (215-269)||(11692-11746)
scaffold0386 (109-191)||(13043-13126)
[»] scaffold0065 (1 HSPs)
scaffold0065 (133-191)||(12328-12387)
[»] scaffold0011 (1 HSPs)
scaffold0011 (103-146)||(228202-228245)
[»] scaffold1026 (1 HSPs)
scaffold1026 (90-180)||(1817-1907)
[»] scaffold0282 (1 HSPs)
scaffold0282 (215-269)||(22507-22560)
[»] scaffold0113 (1 HSPs)
scaffold0113 (115-171)||(47813-47869)


Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 18 - 393
Target Start/End: Complemental strand, 12358910 - 12358532
Alignment:
Q  18 gctttttgttattttctttgcataagaagacaaatacgtggtcacatagag---ttgtccaacgtttgagaaatattttgtatttttctcatttgagtcg 114  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||   |||||||| |||||||||||||||||||||||||||||||||||||    
T  12358910 gctttttgttattttctttgcataagaagacaaatatgtggtcacatagaggagttgtccaatgtttgagaaatattttgtatttttctcatttgagtcg 12358811  T
Q  115 ttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaataatataaatcggaaaagcaaaatatcttatgaag 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12358810 ttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaataatataaatcggaaaagcaaaatatcttatgaag 12358711  T
Q  215 atcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaattgaagggcatggcctcatgcgccaaggcatatggccttatgcgcc 314  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  12358710 atcaaggatatgaagattgaagatcaatggttcttagaaggtttttgaagacaatagaagggcatggcctcatgcgccaaggcatatggccttatgcgcc 12358611  T
Q  315 taggcacatttgtgcggcaaaatgtaattttgcttgtttttaatgctggattgaaggaaaaagtcttgttcttctctct 393  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  12358610 taggcacatttgtgcggaaaaatgtaattttgcttgtttttaatgctggattgaaggaaaaagtcttgttcttgtctct 12358532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 91 - 269
Target Start/End: Complemental strand, 5312858 - 5312679
Alignment:
Q  91 tttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaataatataaatc 190  Q
    |||||||| || |||||||||||||||||||||| ||||||| || | ||| ||||| ||||||||||||||||||||||||||| |||| || ||||||    
T  5312858 tttgtattgttttcatttgagtcgttgtaattcacttttatcttatagcatgcaactccataggtgttttgagtctttttagtgataaatcatgtaaatc 5312759  T
Q  191 ggaaaagcaaaatatcttatgaa-gatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    || |||   ||| |||   |||| |||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||    
T  5312758 ggcaaaaataaacatcaagtgaaggatcaaggatatgaggattgaacataaatggttcttagaagatttttgaagacaat 5312679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 78 - 260
Target Start/End: Complemental strand, 3269051 - 3268868
Alignment:
Q  78 gtttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgaga 177  Q
    ||||||| || |||||||||| || || ||||||| ||||||||||| |||||||||||||||| ||||||| || ||||||| ||||||||||||||||    
T  3269051 gtttgagtaacattttgtattgttttcgtttgagttgttgtaattcacttttatcctaaatcatgcaacttcgtatgtgttttaagtctttttagtgaga 3268952  T
Q  178 aataatataaatcggaaaagcaaaatatcttatgaa-gatcaaggatatgaagattgaagataaatggttcttagaaggttttt 260  Q
    ||| || |||||||| ||| ||| |||||  ||||| ||||||| ||||||||| |||| || |||| |||||| ||| |||||    
T  3268951 aatcatgtaaatcggcaaaacaagatatcacatgaaggatcaagtatatgaagaatgaaaattaatgattcttaaaagcttttt 3268868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 115 - 265
Target Start/End: Original strand, 18496631 - 18496782
Alignment:
Q  115 ttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaataatataaatcggaaaagcaaaatatcttatgaa- 213  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||| || ||| |||||| || || |||||||||||| |   | |||   ||||     
T  18496631 ttgtaattcatttttatcctaaatcatgcgacttcataggtgttttgagcctatttggtgagatatcatgtaaatcggaaaaacgggacatcgagtgaag 18496730  T
Q  214 gatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaaga 265  Q
    ||||||||||||||||||||||||  |||||||||||||| ||| |||||||    
T  18496731 gatcaaggatatgaagattgaagaataatggttcttagaatgttgttgaaga 18496782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 90 - 269
Target Start/End: Original strand, 30405637 - 30405815
Alignment:
Q  90 ttttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaataatataaat 189  Q
    ||||||||| || | |||||| || |||||||||| ||| |||||||| ||| ||||| |||||||||||||||| ||||||||||||||| || |||||    
T  30405637 ttttgtattgtttttatttgactcattgtaattcacttt-atcctaaaccatgcaactccataggtgttttgagt-tttttagtgagaaatcatgtaaat 30405734  T
Q  190 cggaaaagcaaaatatcttatgaag-atcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    ||| |||  || | ||| | ||||| ||| |||||||||||||||||| | |||| |||||||||||| |||||| |||||    
T  30405735 cggcaaaataagaaatcatgtgaaggatcgaggatatgaagattgaagttcaatgattcttagaaggtatttgaatacaat 30405815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 108 - 269
Target Start/End: Complemental strand, 24597059 - 24596897
Alignment:
Q  108 tgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaataatataaatcggaaaagcaaaatatct 207  Q
    ||||||||||||||||| |||||||||||||||| ||||| | |||||||||| |||||||||||||||||||  | |||||||| ||| ||| | |||     
T  24597059 tgagtcgttgtaattcaattttatcctaaatcatgcaactccgtaggtgttttaagtctttttagtgagaaatcgtgtaaatcggcaaaacaagacatca 24596960  T
Q  208 tat-gaagatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
      | ||||||| ||||||| |||||||||| | | |||||| ||||||   ||||||||||||    
T  24596959 cgtggaagatcgaggatataaagattgaagttcagtggttcatagaagaaatttgaagacaat 24596897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 78 - 269
Target Start/End: Original strand, 29544548 - 29544741
Alignment:
Q  78 gtttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtcttttt-agtgag 176  Q
    ||||||| || || ||||||| || ||| | |||||||||||||||| |||| ||||||||  | ||| | |||| ||||||||||| ||||| ||| ||    
T  29544548 gtttgaggaacatattgtattgttttcactcgagtcgttgtaattcacttttctcctaaattgtgcaattccataagtgttttgagtgttttttagtaag 29544647  T
Q  177 aaataatataaatcggaaaagcaaaatatcttatgaag-atcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
     ||| || |||||||  ||| ||| | |||  |||||| ||||| |||||||||||||||||| |||| |||||||||||||||||||||||||    
T  29544648 gaatcatgtaaatcgacaaaccaagacatcacatgaaggatcaaagatatgaagattgaagatcaatgattcttagaaggtttttgaagacaat 29544741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 78 - 237
Target Start/End: Complemental strand, 20461733 - 20461573
Alignment:
Q  78 gtttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgaga 177  Q
    ||||||| || | |||||||| || ||||| |||||||||||| ||| ||| |||||||||||  |||| | |||||||||| |||||||||||||||||    
T  20461733 gtttgaggaacaatttgtattgttttcattcgagtcgttgtaactcaatttcatcctaaatcacgcaacatgataggtgtttcgagtctttttagtgaga 20461634  T
Q  178 aataatataaatcggaaaagcaaaatatcttatgaa-gatcaaggatatgaagattgaaga 237  Q
    ||| || |||||||| |||  || | |||   |||| ||||||||||||||||||||||||    
T  20461633 aatcatgtaaatcggcaaaataagacatcaagtgaaggatcaaggatatgaagattgaaga 20461573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 92 - 269
Target Start/End: Original strand, 1074495 - 1074674
Alignment:
Q  92 ttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtc-tttttagtgagaaataatataaatc 190  Q
    ||||||| || ||||| || || ||||||||   ||||||||||||| || ||||| |||| |||||||| ||| ||||||||||||||| || |||||     
T  1074495 ttgtattattttcattcgattcattgtaatttgcttttatcctaaattatacaactccataagtgttttgtgtcttttttagtgagaaatcatgtaaatt 1074594  T
Q  191 ggaaaagcaaaatatcttatgaa-gatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    |||||||||| | |||   | || ||||||||||||||| ||||||||  ||||||||||| |||||| |||||||||||    
T  1074595 ggaaaagcaagacatcaagtaaaggatcaaggatatgaaaattgaagaccaatggttcttaaaaggttgttgaagacaat 1074674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 92 - 265
Target Start/End: Complemental strand, 9801946 - 9801772
Alignment:
Q  92 ttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtcttt-ttagtgagaaataatataaatc 190  Q
    |||||||||| ||| |  ||||||||||||||| |||||||||| || || ||| | |||||||||||||||| |||  |||||| |||| || ||||||    
T  9801946 ttgtatttttttcactctagtcgttgtaattcacttttatcctagattatgcaattccataggtgttttgagtttttaatagtgataaatcatgtaaatc 9801847  T
Q  191 ggaaaagcaaaatatcttatgaa-gatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaaga 265  Q
    |  ||| ||||| ||| | |||| ||||||||||||||||||||||| | ||||||||||| ||||||||| ||||    
T  9801846 gacaaatcaaaacatcatgtgaaggatcaaggatatgaagattgaag-tcaatggttcttaaaaggtttttaaaga 9801772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 78 - 238
Target Start/End: Complemental strand, 1255299 - 1255137
Alignment:
Q  78 gtttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttt-tagtgag 176  Q
    ||||||| ||||  ||||||| || ||| | ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||| || |||     
T  1255299 gtttgaggaataaattgtattgttttcactcgagtcattgtaattcatttttatcctaaatcatgcaacttcataggtgttttgagtgttttgtaatgaa 1255200  T
Q  177 aaataatataaatcggaaaagcaaaatatcttatgaa-gatcaaggatatgaagattgaagat 238  Q
    |||| || ||||||   ||| ||||| |||  ||||| ||||||||||| ||||| |||||||    
T  1255199 aaattatttaaatcaacaaatcaaaacatcacatgaaggatcaaggatacgaagaatgaagat 1255137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 90 - 205
Target Start/End: Complemental strand, 17881572 - 17881457
Alignment:
Q  90 ttttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaataatataaat 189  Q
    ||||||||| || ||||| || || |||||||| | ||||||| |||||||| |||||| |||||| |||||||||||||||||||||| | || |||||    
T  17881572 ttttgtattattttcattcgaatcattgtaatttaattttatcataaatcatgcaacttaataggtattttgagtctttttagtgagaagtcatgtaaat 17881473  T
Q  190 cggaaaagcaaaatat 205  Q
    ||||||| ||| ||||    
T  17881472 cggaaaaacaagatat 17881457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 92 - 269
Target Start/End: Original strand, 23124943 - 23125122
Alignment:
Q  92 ttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttt-tagtgagaaataatataaatc 190  Q
    ||||||| || ||| | ||||||||||||||||  ||||||| ||||||| |||||  ||||||||||||||| |||| ||||||||||| || ||||||    
T  23124943 ttgtattgttttcactcgagtcgttgtaattcacatttatccaaaatcatacaactctataggtgttttgagtgttttctagtgagaaatcatgtaaatc 23125042  T
Q  191 ggaaaagcaaaatatcttatgaa-gatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    |   || ||| | ||| | |||| |||| |||||||||||||||||| | ||||||||||| ||| || || ||||||||    
T  23125043 gaccaatcaagacatcatgtgaaggatcgaggatatgaagattgaagttcaatggttcttataagattcttaaagacaat 23125122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 110 - 269
Target Start/End: Complemental strand, 20470864 - 20470703
Alignment:
Q  110 agtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttt-tagtgagaaataatataaatcggaaaagcaaaatatctt 208  Q
    ||||||||||||||| ||| | |||||||||| || || ||||| |||||||||| |||| |||||| |||  || |||||||  ||| ||| | |||      
T  20470864 agtcgttgtaattcactttcagcctaaatcatgcatctgcatagctgttttgagtgttttatagtgataaagcatgtaaatcgacaaatcaagacatcgc 20470765  T
Q  209 atgaa-gatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    ||||| |||||||||| |||| ||||||| | |||||||||||||||||| |||||||||||    
T  20470764 atgaacgatcaaggatgtgaatattgaagttcaatggttcttagaaggttcttgaagacaat 20470703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 92 - 270
Target Start/End: Complemental strand, 9761487 - 9761308
Alignment:
Q  92 ttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttt-tagtgagaaataatataaatc 190  Q
    |||||||||| ||| |  ||||||||||||||| |||||||||| || || ||| | |||||||||||||||| |||  |||||| |||| || ||||||    
T  9761487 ttgtatttttttcactctagtcgttgtaattcacttttatcctagattatgcaattccataggtgttttgagtttttaatagtgataaatcatgtaaatc 9761388  T
Q  191 ggaaaagcaaaatatcttatgaag-atcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaatt 270  Q
    |  ||| ||| | |||   ||||| |||||||||||||||||||||| | ||||||||||| ||||||||| |||| ||||    
T  9761387 gacaaatcaagacatcacgtgaaggatcaaggatatgaagattgaag-tcaatggttcttaaaaggtttttaaagaaaatt 9761308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 90 - 269
Target Start/End: Complemental strand, 7372640 - 7372461
Alignment:
Q  90 ttttgtatttttctcatttgagtcgttgtaattcatttttatc-ctaaatcattcaacttcataggtgttttgagt-ctttttagtgagaaataatataa 187  Q
    ||||||||| || ||||| |||||||||||||||| ||||||| | ||||||| |||||||||||||||||| |||  |||||||||||||||  | |||    
T  7372640 ttttgtattgttttcattcgagtcgttgtaattcaattttatcacgaaatcatgcaacttcataggtgttttcagtgttttttagtgagaaatcttgtaa 7372541  T
Q  188 atcggaaaagcaaaatatcttatgaa-gatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    ||| | ||| ||| |||||  ||||| |||||||||||| ||| | |||| | ||| | ||||||||| ||||| ||||||||    
T  7372540 atcagcaaatcaagatatc--atgaaggatcaaggatataaagctggaagttcaat-gatcttagaagatttttaaagacaat 7372461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 92 - 190
Target Start/End: Complemental strand, 8309103 - 8309005
Alignment:
Q  92 ttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaataatataaatc 190  Q
    ||||||| || ||||||||||| |||| ||| | |||||||||||||||| ||||| ||||  ||||||||||||||||||| |||||| || ||||||    
T  8309103 ttgtattgttttcatttgagtcattgtgatttagttttatcctaaatcatgcaactccatacatgttttgagtctttttagtaagaaatcatgtaaatc 8309005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 78 - 169
Target Start/End: Original strand, 7815352 - 7815443
Alignment:
Q  78 gtttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttt 169  Q
    |||| ||||| || |||||||||| ||| | | || ||||||||||| |||||| ||||||||| |||||||||||||||||||||| ||||    
T  7815352 gtttaagaaacatattgtatttttttcactcgggtggttgtaattcagttttattctaaatcatgcaacttcataggtgttttgagtgtttt 7815443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 214 - 269
Target Start/End: Complemental strand, 21545775 - 21545720
Alignment:
Q  214 gatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    ||||||||||||||||||||||||| |||||||||||||| || ||||||||||||    
T  21545775 gatcaaggatatgaagattgaagatcaatggttcttagaaagtatttgaagacaat 21545720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 119 - 200
Target Start/End: Complemental strand, 7326915 - 7326834
Alignment:
Q  119 aattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaataatataaatcggaaaagcaa 200  Q
    |||||| ||| ||||  |||||| |||||| |||||||||||||||| |||||||||||||| ||||||||| | |||||||    
T  7326915 aattcagtttcatccctaatcatgcaacttgataggtgttttgagtcattttagtgagaaatcatataaatcagcaaagcaa 7326834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 109 - 235
Target Start/End: Original strand, 7142158 - 7142286
Alignment:
Q  109 gagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttt-tagtgagaaataatataaatcggaaaagcaaaatatct 207  Q
    |||||||||||||||| |||||||| | ||||| ||||| |||||||||||| ||| |||| ||||||||||| || |||||||  ||| ||| | |||     
T  7142158 gagtcgttgtaattcacttttatccaagatcatgcaactccataggtgttttaagtgttttgtagtgagaaatcatgtaaatcgacaaatcaagacatca 7142257  T
Q  208 tatgaa-gatcaaggatatgaagattgaa 235  Q
      |||| |||||| |||||||||||||||    
T  7142258 cgtgaaggatcaaagatatgaagattgaa 7142286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 78 - 269
Target Start/End: Complemental strand, 22532729 - 22532538
Alignment:
Q  78 gtttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaa--tcattcaacttcataggtgttttgagtctttttagtga 175  Q
    ||||||| || ||||| |||| || ||||| || ||| | ||||||| ||||||||||||  ||||  ||||| ||  ||||| ||||| ||||||||||    
T  22532729 gtttgaggaacattttctattgttttcattggattcgctataattcacttttatcctaaaaatcatggaacttgat--gtgttatgagtatttttagtga 22532632  T
Q  176 gaaataatataaatcggaaaagcaaaatatcttatgaag-atcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    ||||| || |||||||| ||| ||| | |||  |||| | ||| |||||| ||||| |||| || |||||||||||||| |||||||||||||||    
T  22532631 gaaatcatgtaaatcggcaaa-caagacatcacatgatggatcgaggatacgaagaatgaatatcaatggttcttagaaagtttttgaagacaat 22532538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 153
Target Start/End: Complemental strand, 4977894 - 4977831
Alignment:
Q  90 ttttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcatag 153  Q
    |||||||||||| |||||  ||||||||||||||| ||||||||||||| || |||||||||||    
T  4977894 ttttgtatttttatcattcaagtcgttgtaattcacttttatcctaaattatgcaacttcatag 4977831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 215 - 269
Target Start/End: Original strand, 14649663 - 14649717
Alignment:
Q  215 atcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    |||||||||||||| | ||||||| ||||||| ||||||||||||||||||||||    
T  14649663 atcaaggatatgaataatgaagatcaatggttattagaaggtttttgaagacaat 14649717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 112 - 164
Target Start/End: Complemental strand, 2632488 - 2632436
Alignment:
Q  112 tcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagt 164  Q
    ||||||||||||| |||||||| | ||||| ||||||||||||||||||||||    
T  2632488 tcgttgtaattcagttttatccaagatcatgcaacttcataggtgttttgagt 2632436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 90 - 161
Target Start/End: Original strand, 37144961 - 37145032
Alignment:
Q  90 ttttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttg 161  Q
    ||||||||| || |||||  ||||||||||||  |||||||||||||||||| ||||| | |||||||||||    
T  37144961 ttttgtattattttcattcaagtcgttgtaatatatttttatcctaaatcatgcaactccgtaggtgttttg 37145032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 180
Target Start/End: Complemental strand, 2353279 - 2353229
Alignment:
Q  130 atcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaat 180  Q
    |||||||||||| ||||| ||||||||||||| | ||||||||||||||||    
T  2353279 atcctaaatcatgcaactccataggtgttttgggcctttttagtgagaaat 2353229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 160
Target Start/End: Complemental strand, 21545885 - 21545803
Alignment:
Q  78 gtttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgtttt 160  Q
    ||||||| || || ||||||| || ||| | |||||||||||| ||| |||||||||||||||| ||||| ||||||| ||||    
T  21545885 gtttgaggaacatattgtattgttttcactcgagtcgttgtaactcacttttatcctaaatcatgcaactacataggtttttt 21545803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 115 - 205
Target Start/End: Original strand, 4828857 - 4828945
Alignment:
Q  115 ttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaataatataaatcggaaaagcaaaatat 205  Q
    |||||||| | |||||||||||||||| ||||| ||||| ||  ||||||||||||| |||||||| || || |||| |||| ||| ||||    
T  4828857 ttgtaatttacttttatcctaaatcatgcaactccatagttg--ttgagtctttttaatgagaaatcatgtagatcgaaaaaacaagatat 4828945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 214 - 269
Target Start/End: Original strand, 7494863 - 7494917
Alignment:
Q  214 gatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    ||||||||||||||||||||||| | |||||||||||||||||   ||||||||||    
T  7494863 gatcaaggatatgaagattgaag-ttaatggttcttagaaggtccatgaagacaat 7494917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 92 - 159
Target Start/End: Original strand, 10292797 - 10292864
Alignment:
Q  92 ttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttt 159  Q
    |||||||||| ||| | |||||||||||||||| |||||||| | ||||| ||||  |||||||||||    
T  10292797 ttgtatttttttcaatcgagtcgttgtaattcagttttatccaagatcatgcaacaccataggtgttt 10292864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 3e-42; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 78 - 268
Target Start/End: Original strand, 29291800 - 29291990
Alignment:
Q  78 gtttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgaga 177  Q
    ||||||| ||| |||| ||||||| ||||||||||||||||||| || |||||||||||||||| |||||| ||| || ||||||||||||||||| |||    
T  29291800 gtttgaggaattttttatattttt-tcatttgagtcgttgtaatgcagttttatcctaaatcatgcaactttataagtattttgagtctttttagtaaga 29291898  T
Q  178 aataatataaatcggaaaagcaaaatatcttatgaag-atcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaa 268  Q
    ||| || |||||||| ||| ||| |||||   ||||| ||| |||||||||| ||||||||| ||||||||||||||||| |||||||||||    
T  29291899 aatcatgtaaatcggcaaaacaagatatcacgtgaagaatcgaggatatgaatattgaagatcaatggttcttagaaggtctttgaagacaa 29291990  T

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Target: chr8; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 90 - 249
Target Start/End: Original strand, 30543802 - 30543962
Alignment:
Q  90 ttttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaataatataaat 189  Q
    ||||||||| || |||||||||| ||||||||||| |||||||||||||||| ||| |  ||||||||||||||||||||| ||||||||| || |||||    
T  30543802 ttttgtattgttttcatttgagttgttgtaattcacttttatcctaaatcatgcaattatataggtgttttgagtctttttggtgagaaatcatgtaaat 30543901  T
Q  190 cggaaaagcaaaatatcttatgaa-gatcaaggatatgaagattgaagataaatggttctt 249  Q
    ||| ||| ||| |||||  ||||| |||  |||||||||||||||||| | ||||||||||    
T  30543902 cggtaaaacaagatatcacatgaaggattgaggatatgaagattgaagttcaatggttctt 30543962  T

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Target: chr8; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 91 - 269
Target Start/End: Original strand, 5153800 - 5153979
Alignment:
Q  91 tttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaataatataaatc 190  Q
    |||||||| || ||||| ||||| |||||||||| ||||||| ||||||||||||||  |||||||||||||||||||||||| |||||| || |||||     
T  5153800 tttgtattattttcattcgagtcattgtaattcagttttatcttaaatcattcaactcgataggtgttttgagtctttttagtaagaaatcatgtaaata 5153899  T
Q  191 ggaaaagcaaaatatcttatgaa-gatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    || ||| ||| | ||    |||| |||| |||||||||||||||||||| |||| || || |||||||||||||||||||    
T  5153900 ggcaaaacaagacataaagtgaaggatcgaggatatgaagattgaagatcaatgattattggaaggtttttgaagacaat 5153979  T

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Target: chr8; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 82 - 269
Target Start/End: Complemental strand, 6888271 - 6888086
Alignment:
Q  82 gagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaata 181  Q
    |||||| ||||||||||||| ||||||||||| |||||||||| || ||||||||||||| ||||| |  |||||||||||||| ||||||||||||||     
T  6888271 gagaaacattttgtattttt-tcatttgagtcattgtaattcagttctatcctaaatcatgcaactcc--aggtgttttgagtcattttagtgagaaatc 6888175  T
Q  182 atataaatcggaaaagcaaaatatcttatgaag-atcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    || ||||||   ||| ||||  |||   || || ||| |||||||||||||||||||| ||||||||||| || || ||||||||||||    
T  6888174 atgtaaatcaacaaaacaaaccatcacgtgcagtatcgaggatatgaagattgaagatcaatggttcttaaaatgtctttgaagacaat 6888086  T

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Target: chr8; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 103 - 270
Target Start/End: Complemental strand, 14424873 - 14424705
Alignment:
Q  103 tcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaataatataaatcggaaaagcaaaa 202  Q
    ||||| |||||||||||||||| |||||||||||||||| ||||| ||||||||||||  || ||||||||||||||| || |||||||| ||| ||| |    
T  14424873 tcattcgagtcgttgtaattcagttttatcctaaatcatgcaactccataggtgttttaggtttttttagtgagaaatcatgtaaatcggcaaaacaaga 14424774  T
Q  203 tatcttatgaa-gatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaatt 270  Q
     | |    ||| |||  | |||| ||||||||||||| |||||||||||||||||||||||| ||||||    
T  14424773 caacaagggaaggatatatgataagaagattgaagatcaatggttcttagaaggtttttgaacacaatt 14424705  T

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Target: chr8; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 90 - 259
Target Start/End: Original strand, 28074555 - 28074724
Alignment:
Q  90 ttttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaataatataaat 189  Q
    ||||||||| || ||||| ||||||||| |||||| |||||||||||||||| ||||| ||||||||||| |||||||||||||||||||| || |||||    
T  28074555 ttttgtattgttttcatt-gagtcgttgcaattcacttttatcctaaatcatgcaactccataggtgtttcgagtctttttagtgagaaatcatgtaaat 28074653  T
Q  190 cggaaaagcaaaatatcttatgaa-gatcaaggatatgaagattgaagataaatggttcttagaaggtttt 259  Q
      | ||| ||| | |||  ||||| ||||||||||||||||| ||||||| | |||| ||||  |||||||    
T  28074654 atgcaaaacaagacatcaaatgaaggatcaaggatatgaagaatgaagatcagtggtccttacgaggtttt 28074724  T

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Target: chr8; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 78 - 180
Target Start/End: Original strand, 10867017 - 10867119
Alignment:
Q  78 gtttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgaga 177  Q
    ||||||| ||||||||||||| || |||||||||||||||||||||| |||||||  ||||||| ||||| || ||||| ||||| ||||||||||||||    
T  10867017 gtttgaggaatattttgtattgttttcatttgagtcgttgtaattcagttttatctcaaatcatgcaactccaaaggtgctttgaatctttttagtgaga 10867116  T
Q  178 aat 180  Q
    |||    
T  10867117 aat 10867119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 78 - 269
Target Start/End: Complemental strand, 28292185 - 28291994
Alignment:
Q  78 gtttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgaga 177  Q
    ||||||| || ||||| | || || |||||||||| ||| ||||||| ||||||||||| | || |||||||| | |||||||| || ||||||||||||    
T  28292185 gtttgaggaacattttatgttcttttcatttgagttgttataattcagttttatcctaatttatgcaacttcacaagtgttttgtgtttttttagtgaga 28292086  T
Q  178 aataatataaatcggaaaagcaaaatatcttatgaag-atcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    | | || |||||||  |||  || | |||  |||||| ||  |||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  28292085 a-tcatgtaaatcgccaaaataagacatcacatgaaggattgaggatatgaagattgaagattaatggttcttagaaggtctttgaagacaat 28291994  T

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Target: chr8; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 90 - 269
Target Start/End: Original strand, 11437460 - 11437641
Alignment:
Q  90 ttttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaataatataaat 189  Q
    |||||| || || ||||| |||||||| ||||||| ||| ||| ||  |||| ||||| |||| || |||||||||||||||||||||||| || |||||    
T  11437460 ttttgtgttgttttcattcgagtcgttataattcagtttcatcataggtcatgcaactccatatgtattttgagtctttttagtgagaaatcatgtaaat 11437559  T
Q  190 cggaaaagcaaaatatcttatgaa--gatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    ||| ||| ||| | |||   ||||  ||||||||||||||| ||||||| | |||||||||||||||   ||||||||||||    
T  11437560 cggcaaaacaagacatcaagtgaaaggatcaaggatatgaaaattgaagttcaatggttcttagaagacatttgaagacaat 11437641  T

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Target: chr8; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 90 - 263
Target Start/End: Complemental strand, 30851173 - 30850999
Alignment:
Q  90 ttttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaataatataaat 189  Q
    |||| |||| || ||||| || |||||||||||||  ||||||||||||||| |||||  ||||||||||||  ||| | |||||||||||  | |||||    
T  30851173 ttttatattattttcattcgaatcgttgtaattcagatttatcctaaatcatgcaactcaataggtgttttggatctatctagtgagaaatcgtgtaaat 30851074  T
Q  190 cggaaaagcaaaatatcttatgaa-gatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaa 263  Q
    |   ||||||| | ||||  |||| ||||||||||||||||||||||||| || ||||||||||| || ||||||    
T  30851073 catcaaagcaagacatctagtgaaggatcaaggatatgaagattgaagatcaacggttcttagaatgtctttgaa 30850999  T

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Target: chr8; HSP #11
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 78 - 192
Target Start/End: Complemental strand, 27097887 - 27097771
Alignment:
Q  78 gtttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtc--tttttagtga 175  Q
    ||||||| || || ||| ||| || |||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||  ||||  ||||||||||    
T  27097887 gtttgaggaacatgttgcattgttttcatttgagtcgttgtaattcagttttatcataaatcatgcaacttcataggtgtttaaagtctttttttagtga 27097788  T
Q  176 gaaataatataaatcgg 192  Q
    ||||| || ||||||||    
T  27097787 gaaatcatgtaaatcgg 27097771  T

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Target: chr8; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 89 - 190
Target Start/End: Complemental strand, 28260364 - 28260263
Alignment:
Q  89 attttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaataatataaa 188  Q
    |||||||||| || |||||| ||||||||||||| |  |||||||||||||||   ||| |||||||||||||||||||||||||||||||| || ||||    
T  28260364 attttgtattattttcattttagtcgttgtaatttaggtttatcctaaatcatgagactccataggtgttttgagtctttttagtgagaaatcatgtaaa 28260265  T
Q  189 tc 190  Q
    ||    
T  28260264 tc 28260263  T

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Target: chr8; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 95 - 190
Target Start/End: Original strand, 31436525 - 31436620
Alignment:
Q  95 tatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaataatataaatc 190  Q
    ||||||| ||||| |||||  ||||||| | |||||||||||||||| ||||| |||||||||||||| ||||||||||||||||| || ||||||    
T  31436525 tatttttttcattcgagtcagtgtaatttagttttatcctaaatcatgcaactacataggtgttttgaatctttttagtgagaaatcatgtaaatc 31436620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 109 - 269
Target Start/End: Complemental strand, 16052332 - 16052170
Alignment:
Q  109 gagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttt-tagtgagaaataatataaatcggaaaagcaaaatatct 207  Q
    |||||||| |||||||  |||| | |||||||| |||||  ||||||||||||||| |||| ||||||||||| || ||||||   ||| ||| | |||     
T  16052332 gagtcgttataattcacatttaccttaaatcatgcaactcaataggtgttttgagtgttttgtagtgagaaatcatctaaatcaacaaatcaagacatca 16052233  T
Q  208 tatgaag-atcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
     |||||| || ||||||||||||||| ||||  |||| |||||||||||||||||||||||||    
T  16052232 catgaaggataaaggatatgaagattaaagaccaatgattcttagaaggtttttgaagacaat 16052170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 78 - 180
Target Start/End: Complemental strand, 24584810 - 24584707
Alignment:
Q  78 gtttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttt-tagtgag 176  Q
    ||||||| ||| ||||||||| || ||||| ||||| |||||||||||||||||| |||||||| |||||  |||||| |||||||| |||| |||||||    
T  24584810 gtttgaggaattttttgtattgttttcattcgagtcattgtaattcatttttatcataaatcatgcaactctataggtattttgagttttttgtagtgag 24584711  T
Q  177 aaat 180  Q
    ||||    
T  24584710 aaat 24584707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 109 - 265
Target Start/End: Original strand, 24696641 - 24696799
Alignment:
Q  109 gagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttt-tagtgagaaataatataaatcggaaaagcaaaatatct 207  Q
    |||||||||||||| | || ||||||||||||| ||| |||| ||||||||| ||| |||| |||| |||||| || ||||||   ||| ||| | |||     
T  24696641 gagtcgttgtaatttacttctatcctaaatcatacaatttcacaggtgtttttagtgttttatagtaagaaatcatgtaaatcaacaaatcaagacatca 24696740  T
Q  208 tatgaag-atcaaggatatgaagattgaagataaatggttcttagaaggtttttgaaga 265  Q
     || ||| |||||||||||||||||||||||  | | ||||||||||||||||||||||    
T  24696741 cataaaggatcaaggatatgaagattgaagaccacttgttcttagaaggtttttgaaga 24696799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 105 - 196
Target Start/End: Complemental strand, 12774902 - 12774810
Alignment:
Q  105 atttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagt-ctttttagtgagaaataatataaatcggaaaa 196  Q
    ||||||||| |||||||| | |||||||||||||||| |||   |||||||||||| ||| ||||||||| ||||||||| ||||||||||||    
T  12774902 atttgagtcattgtaatttagttttatcctaaatcatgcaataccataggtgtttttagtactttttagtaagaaataatgtaaatcggaaaa 12774810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 148 - 269
Target Start/End: Complemental strand, 13583535 - 13583413
Alignment:
Q  148 tcataggtgttttgagtctttttagtgagaaataatataaatcggaaaagcaaaatatcttatgaag-atcaaggatatgaagattgaagataaatggtt 246  Q
    |||||| || ||||||||||||||||||||||| || |||||||  ||| ||| | |||   ||||| ||| ||||||||| |||||||| | |||||||    
T  13583535 tcatagttggtttgagtctttttagtgagaaatcatgtaaatcgacaaaacaagacatcaagtgaaggatcgaggatatgatgattgaagttcaatggtt 13583436  T
Q  247 cttagaaggtttttgaagacaat 269  Q
    |||||||| | ||||||||||||    
T  13583435 cttagaagatatttgaagacaat 13583413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 78 - 269
Target Start/End: Original strand, 32239316 - 32239509
Alignment:
Q  78 gtttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttt-tagtgag 176  Q
    ||||||| || || ||||||| || | | ||||||||||| |||||| ||||||| |||||||| ||||| ||||  |||||||||| |||| |||||||    
T  32239316 gtttgagtaacatattgtattgtttttacttgagtcgttgcaattcacttttatcttaaatcatgcaactccataaatgttttgagtgttttgtagtgag 32239415  T
Q  177 aaataatataaatcggaaaagcaaaatatcttatgaa-gatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    ||||  | ||||| |  ||| | | | |||  ||||| ||| ||||||||||||||||||| | ||||||| ||| |||||| || ||||||||    
T  32239416 aaatcgtgtaaattgacaaatcgagacatcacatgaaggataaaggatatgaagattgaagttcaatggtttttataaggttcttaaagacaat 32239509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 109 - 170
Target Start/End: Complemental strand, 35135477 - 35135416
Alignment:
Q  109 gagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtcttttt 170  Q
    ||||| ||||||||||||||||||||||||||| ||||| || | |||||||||||||||||    
T  35135477 gagtcattgtaattcatttttatcctaaatcatgcaactccacatgtgttttgagtcttttt 35135416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 115 - 269
Target Start/End: Complemental strand, 22894579 - 22894425
Alignment:
Q  115 ttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttt-tagtgagaaataatataaatcggaaaagcaaaatatcttatgaa 213  Q
    |||| ||||| ||||||| || ||||||||||| ||||||| |||| ||| || | ||||||||||| || ||||||| |||| ||| |||||  |||||    
T  22894579 ttgtgattcacttttatcttagatcattcaactccataggtatttttagtgttctatagtgagaaatcatgtaaatcg-aaaatcaagatatcacatgaa 22894481  T
Q  214 g-atcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    | ||||| ||||| |||||||||  | ||| ||||||||| ||||||||||||||||    
T  22894480 ggatcaatgatataaagattgaat-tcaattgttcttagatggtttttgaagacaat 22894425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 128 - 269
Target Start/End: Complemental strand, 28859275 - 28859132
Alignment:
Q  128 ttatcctaaatcattcaacttcataggtgttttgagtctttt-tagtgagaaataatataaatcggaaaagcaaaatatcttatgaa-gatcaaggatat 225  Q
    |||||||||||||  ||||  |||| ||||||||||  |||| |||| |||||| || ||||| |  ||| | ||| |||  ||||| ||||||||||||    
T  28859275 ttatcctaaatcacgcaacaccatatgtgttttgagggttttgtagtaagaaatcatgtaaatggacaaacctaaacatcacatgaaggatcaaggatat 28859176  T
Q  226 gaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
     |||||| ||||| ||||||||||||| ||||||||||||||||    
T  28859175 caagattaaagatcaatggttcttagatggtttttgaagacaat 28859132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 79 - 169
Target Start/End: Complemental strand, 5570226 - 5570136
Alignment:
Q  79 tttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttt 169  Q
    |||||| || || ||||||| || ||| | |||| ||||||||||| |||||||||| ||||| ||||||| |||||||||||||| ||||    
T  5570226 tttgaggaacatattgtattgttttcactcgagttgttgtaattcacttttatcctatatcatgcaacttcgtaggtgttttgagtgtttt 5570136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 171
Target Start/End: Complemental strand, 41505623 - 41505530
Alignment:
Q  78 gtttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtcttttta 171  Q
    ||||||| ||||||||||||| || ||||| |||| ||||||||||| ||| || |  |||||| |||||||||||  || |||||||||||||    
T  41505623 gtttgaggaatattttgtattattttcattcgagttgttgtaattcactttcatacctaatcatgcaacttcatagacgtgttgagtcttttta 41505530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 78 - 265
Target Start/End: Original strand, 12956518 - 12956698
Alignment:
Q  78 gtttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgaga 177  Q
    ||||||| || || ||||||| || ||| | ||||| | |||||||| ||||||||||||||||  ||||  ||||||||||||        ||||||      
T  12956518 gtttgaggaaaatattgtattgttttcactcgagtcatcgtaattcacttttatcctaaatcatgtaactctataggtgttttg--------tagtgaag 12956609  T
Q  178 aataatataaatcggaaaagcaaaatatcttatgaaga-tcaaggatatgaagattgaagataaatggttcttagaaggtttttgaaga 265  Q
    ||| ||||||||||  ||| ||| |||||  ||||||| ||||||||||||||| ||||||| ||| ||| || |||||||||| ||||    
T  12956610 aatcatataaatcgataaaccaagatatcacatgaagaatcaaggatatgaagactgaagatcaattgtttttggaaggttttttaaga 12956698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 78 - 269
Target Start/End: Complemental strand, 28901426 - 28901243
Alignment:
Q  78 gtttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgaga 177  Q
    ||||||| || || ||||||| || ||| | ||||||||||||||| ||||||||||| || || ||||| | ||| |||||||        |||||| |    
T  28901426 gtttgaggaacatattgtattgttttcactcgagtcgttgtaattcgtttttatcctagataatgcaactccttagatgttttg--------tagtgata 28901335  T
Q  178 aataatataaatcggaaaagcaaaatatcttatgaaga-tcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    |||||| || ||||  ||| ||| | ||| |||||||| |||| |||||||||||||||  | ||||||||||| ||||||| ||||||||||    
T  28901334 aataatgtacatcgacaaatcaagacatcatatgaagaatcaatgatatgaagattgaat-tcaatggttcttataaggtttctgaagacaat 28901243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 196
Target Start/End: Original strand, 12357574 - 12357620
Alignment:
Q  150 ataggtgttttgagtctttttagtgagaaataatataaatcggaaaa 196  Q
    ||||||||||||||||||||||||||||||| || |||||| |||||    
T  12357574 ataggtgttttgagtctttttagtgagaaattatgtaaatctgaaaa 12357620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 196
Target Start/End: Original strand, 12358702 - 12358748
Alignment:
Q  150 ataggtgttttgagtctttttagtgagaaataatataaatcggaaaa 196  Q
    ||||||||||||||||||||||||||||||| || |||||| |||||    
T  12358702 ataggtgttttgagtctttttagtgagaaattatgtaaatctgaaaa 12358748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 163
Target Start/End: Complemental strand, 13081992 - 13081938
Alignment:
Q  109 gagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgag 163  Q
    |||| ||||||||||| || ||||||| ||||| |||||||||||||||||||||    
T  13081992 gagtagttgtaattcagttgtatcctagatcatgcaacttcataggtgttttgag 13081938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 190
Target Start/End: Original strand, 16054334 - 16054436
Alignment:
Q  89 attttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttt-tagtgagaaataatataa 187  Q
    |||||||||| || ||| | |||| |||||||||||||||||||||| |||||  |||| ||||| |||||||| | |||| ||||||| ||| || |||    
T  16054334 attttgtattgttttcactcgagttgttgtaattcatttttatcctagatcataaaactccatagatgttttgattgttttgtagtgaggaatcatgtaa 16054433  T
Q  188 atc 190  Q
    |||    
T  16054434 atc 16054436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 175
Target Start/End: Original strand, 31232124 - 31232182
Alignment:
Q  117 gtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtga 175  Q
    ||||||||  ||||||||||||||| ||||| ||||||||||||| || ||||||||||    
T  31232124 gtaattcagctttatcctaaatcatgcaactccataggtgttttgcgtttttttagtga 31232182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 78 - 135
Target Start/End: Original strand, 28902118 - 28902175
Alignment:
Q  78 gtttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatccta 135  Q
    |||||||||| || ||||||| || ||||| |||||||||||||||| ||||||||||    
T  28902118 gtttgagaaacatattgtattgttttcattcgagtcgttgtaattcacttttatccta 28902175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 214 - 269
Target Start/End: Complemental strand, 11310203 - 11310149
Alignment:
Q  214 gatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    ||||||||||||||||||| ||| | |||| ||||||||||||||||||| |||||    
T  11310203 gatcaaggatatgaagatttaag-tcaatgattcttagaaggtttttgaaaacaat 11310149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 90 - 269
Target Start/End: Original strand, 20694681 - 20694861
Alignment:
Q  90 ttttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaataatataaat 189  Q
    ||||||||| || ||||| ||||| |||||||||| |||||||| |||| |||||||| |||| |||||||||||||||||||| |||||| || |||||    
T  20694681 ttttgtattgttttcattcgagtcattgtaattcagttttatcccaaattattcaactgcatatgtgttttgagtctttttagtaagaaatcatgtaaat 20694780  T
Q  190 cggaaaagcaaaatatcttatgaa-gatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    ||| ||| ||| | ||| |||||| ||| | ||| || |||||||||||||||||||||||||||||| ||||||||||||    
T  20694781 cggcaaaacaagacatcatatgaaggataacggacattaagattgaagataaatggttcttagaaggtatttgaagacaat 20694861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 66 - 269
Target Start/End: Original strand, 26070491 - 26070695
Alignment:
Q  66 gagttgtccaacgtttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtc 165  Q
    |||||||| | | |||||| || |||| ||||| || ||||| ||||   ||||||||| ||||||| |||||||| ||||| |||| ||||||||||||    
T  26070491 gagttgtcaatcatttgaggaaaatttagtattgttttcattcgagttaatgtaattcagttttatcataaatcatgcaactccataagtgttttgagtc 26070590  T
Q  166 tttttagtgagaaataatataaatcggaaaagcaaaatatcttatgaa-gatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaag 264  Q
    ||||||||||||||| || ||||| || ||| ||| | |||  ||||| |||||||||||||||||||||||||  ||||||| || |||||||||||||    
T  26070591 tttttagtgagaaatcatgtaaattggcaaaacaagacatcacatgaaggatcaaggatatgaagattgaagatctatggttcgtataaggtttttgaag 26070690  T
Q  265 acaat 269  Q
    |||||    
T  26070691 acaat 26070695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 89 - 269
Target Start/End: Complemental strand, 7742944 - 7742763
Alignment:
Q  89 attttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaataatataaa 188  Q
    |||||||||| || || || ||||| |||||||||| ||||||||||||||||  ||  ||||| ||||||||||| |||||| |||||||| || ||||    
T  7742944 attttgtattgttttcgttcgagtctttgtaattcacttttatcctaaatcatgtaaaatcatatgtgttttgagtttttttaatgagaaatcatgtaaa 7742845  T
Q  189 tcggaaaagcaaaatatcttatgaag-atcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    || | ||| ||||| |||   ||||| ||| | |||||||||| ||||||| ||||||||||||||||| ||||||||||||    
T  7742844 tcagtaaaacaaaacatcacgtgaagaatcgaagatatgaagactgaagatcaatggttcttagaaggtctttgaagacaat 7742763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 78 - 262
Target Start/End: Complemental strand, 24411015 - 24410830
Alignment:
Q  78 gtttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgaga 177  Q
    ||||||| || |||||||||| || |||||||||||||||||||||| |||||||||||||| | ||||||   ||||||||||||| ||||||||||||    
T  24411015 gtttgaggaaaattttgtattgttttcatttgagtcgttgtaattcagttttatcctaaatcgtgcaacttgcgaggtgttttgagtatttttagtgaga 24410916  T
Q  178 aataatataaatcggaaaagcaaaatatcttatgaa-gatcaaggatatgaagattgaagataaatggttcttagaaggtttttga 262  Q
    ||| || | ||| || |||  || | |||  ||||| |||| ||||| |||||||| ||||| ||||||||||| ||||| |||||    
T  24410915 aatcatgtcaattggcaaaataagacatcacatgaaggatcgaggatctgaagattcaagatcaatggttcttataaggtatttga 24410830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 78 - 261
Target Start/End: Complemental strand, 25594778 - 25594593
Alignment:
Q  78 gtttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttt-tagtgag 176  Q
    ||||||| || || ||||||| || ||| | |||| |||||| |||||||||||||||||| || |||||||||| ||||||||||| |||| |||||||    
T  25594778 gtttgaggaacatattgtattgttttcactggagttgttgtatttcatttttatcctaaatgatgcaacttcatatgtgttttgagtgttttatagtgag 25594679  T
Q  177 aaataatataaatcggaaaagcaaaatatcttatgaa-gatcaaggatatgaagattgaagataaatggttcttagaaggtttttg 261  Q
    |||| || ||||||| ||||  || | |||  ||||| |||||||||||||||||||||| || ||||| | ||||||||||||||    
T  25594678 aaatcatgtaaatcgaaaaattaagacatcacatgaacgatcaaggatatgaagattgaatatcaatggatattagaaggtttttg 25594593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 109 - 197
Target Start/End: Original strand, 25367654 - 25367742
Alignment:
Q  109 gagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaataatataaatcggaaaag 197  Q
    ||||||||| |||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  25367654 gagtcgttgaaattcagttttatcataaatcatgcaacttcataggtgttttgagtctttttagtgagaaatcatgtaaatcggaaaag 25367742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 126 - 269
Target Start/End: Complemental strand, 11274368 - 11274223
Alignment:
Q  126 ttttatcctaaatcattcaacttcataggtgttttgagtctttt-tagtgagaaataatataaatcggaaaagcaaaatatcttatgaag-atcaaggat 223  Q
    |||||||||||||||| ||||| |||||||||||||||| |||| |||| |||||| || || ||||  ||| ||| | |||  |||||| |||||||||    
T  11274368 ttttatcctaaatcatgcaactccataggtgttttgagtgttttgtagtaagaaatcatgtatatcgacaaatcaagacatcacatgaaggatcaaggat 11274269  T
Q  224 atgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    ||||||||||||||  ||||||||||||||||| ||||||||||||    
T  11274268 atgaagattgaagaccaatggttcttagaaggtctttgaagacaat 11274223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 111 - 265
Target Start/End: Original strand, 18178162 - 18178319
Alignment:
Q  111 gtcgttgtaattcatttttatcctaaatcatt-caacttcataggtgttttgagtctttttagtgagaaataatataaatcgg-aaaagcaaaatatctt 208  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||| || ||||| || |||| ||| | | |      
T  18178162 gtcgttgtaattcagttttatcctaaatcattgcaacttcataggtatttttagtctttttagtgagaaatcatgtaaattggaaaaaacaagacaccgc 18178261  T
Q  209 atgaa-gatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaaga 265  Q
    ||||| |||| |||||||||||||||||||  ||| |||||| |||||| ||||||||    
T  18178262 atgaaggatcgaggatatgaagattgaagaccaattgttcttggaaggtctttgaaga 18178319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 78 - 265
Target Start/End: Original strand, 16634075 - 16634264
Alignment:
Q  78 gtttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttt-tagtgag 176  Q
    |||||||||| || ||||||| || ||| | |||||||||||||||| |||||| ||||||||| |||||  ||||||||||||| | ||||  ||||||    
T  16634075 gtttgagaaacatattgtattgttttcactcgagtcgttgtaattcacttttattctaaatcatgcaactctataggtgttttgaatgttttgcagtgag 16634174  T
Q  177 aaataatataaatcggaaaagcaaaatatcttatgaa-gatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaaga 265  Q
    |||| ||||||||||  ||| ||| | |||   |||| || |||  |||||||| |||||||  ||||||||||||||||||||||||||    
T  16634175 aaatcatataaatcgacaaatcaagacatcacgtgaaggaacaataatatgaagtttgaagaccaatggttcttagaaggtttttgaaga 16634264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 86 - 269
Target Start/End: Complemental strand, 26330146 - 26329963
Alignment:
Q  86 aatattttgtatttttctcatttgagtc-gttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttt-tagtgagaaataat 183  Q
    ||||| ||||||| || ||| ||||| | ||||||||||  |||||||||| ||||| |||||||||||||||||||||| |||| ||||  ||||| ||    
T  26330146 aatatattgtattgttttcacttgagccagttgtaattcccttttatcctagatcatgcaacttcataggtgttttgagtgttttgtagt--gaaatcat 26330049  T
Q  184 ataaatcggaaaagcaaaatatcttatgaa-gatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
     ||||| | |||| ||| | |||  ||||| ||||||||||||||||||||||| | |||||| |||||||||||||| ||||||||    
T  26330048 gtaaattgaaaaatcaagacatcacatgaaggatcaaggatatgaagattgaag-tcaatggtccttagaaggttttttaagacaat 26329963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 105 - 192
Target Start/End: Original strand, 30790832 - 30790919
Alignment:
Q  105 atttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaataatataaatcgg 192  Q
    |||||||||||| ||||||| ||||||||||||| || ||||||||| ||||||||||||||||||||||| |||| || ||||||||    
T  30790832 atttgagtcgttataattcagttttatcctaaattatccaacttcattggtgttttgagtctttttagtgaaaaattatgtaaatcgg 30790919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 126 - 265
Target Start/End: Complemental strand, 11997932 - 11997790
Alignment:
Q  126 ttttatcctaaatcattcaacttcataggtgttttgag-tctttttagtgagaaataatataaatcggaaaagcaaaatatcttatgaa-gatcaag-ga 222  Q
    |||||| ||||||||| ||||||||||||||||||||| | ||||||||||||||  || |||||||| | ||||| | ||||||| || ||||||| ||    
T  11997932 ttttatactaaatcatgcaacttcataggtgttttgagttttttttagtgagaaaacatgtaaatcggcagagcaagacatcttattaaggatcaagaga 11997833  T
Q  223 tatgaagattgaagataaatggttcttagaaggtttttgaaga 265  Q
    |||||||| ||||||| |||| || ||||||||||||| ||||    
T  11997832 tatgaagaatgaagatcaatgatttttagaaggtttttaaaga 11997790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 90 - 238
Target Start/End: Complemental strand, 19763964 - 19763817
Alignment:
Q  90 ttttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaataatataaat 189  Q
    ||||||||| || ||||||||| |  |||| |||| |||||||||||||||| |||||||||  ||||||||||||||||||||||||||| || |||||    
T  19763964 ttttgtattgttttcatttgaggcaatgtagttcagttttatcctaaatcatgcaacttcat--gtgttttgagtctttttagtgagaaatcatgtaaat 19763867  T
Q  190 cggaaaagcaaaatatcttatgaag-atcaaggatatgaagattgaagat 238  Q
    ||| ||| | | | |||   ||||| |||||||| |||||||||||||||    
T  19763866 cggcaaaacgagacatcaagtgaagaatcaaggaaatgaagattgaagat 19763817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 78 - 269
Target Start/End: Original strand, 17027556 - 17027748
Alignment:
Q  78 gtttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttt-tagtgag 176  Q
    ||||||| || || ||| ||| || ||| |||||||||||||||||| |||||||||||||||  ||||| |||||||||||||| | ||||    ||||    
T  17027556 gtttgaggaacatattgaattgttttcacttgagtcgttgtaattcacttttatcctaaatcacgcaactccataggtgttttgactgttttgccatgag 17027655  T
Q  177 aaataatataaatcggaaaagcaaaatatcttatg-aagatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    |||| || ||||||| |||| ||| | |||   || |||||||| |||||||||||||||| | |||| ||||||||||||| |||||||||||    
T  17027656 aaatcatgtaaatcgaaaaatcaagacatcacgtgcaagatcaaagatatgaagattgaag-ttaatgcttcttagaaggttcttgaagacaat 17027748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 78 - 268
Target Start/End: Original strand, 24841782 - 24841973
Alignment:
Q  78 gtttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttt-tagtgag 176  Q
    ||||||| || || ||||||| || ||| | |||||||||||| ||| |||||||||| |||||  |||| |||||||||||| ||| |||| |||||||    
T  24841782 gtttgaggaacatattgtattgttttcactcgagtcgttgtaagtcacttttatcctagatcatggaactccataggtgtttttagtgttttgtagtgag 24841881  T
Q  177 aaataatataaatcggaaaagcaaaatatcttatgaa-gatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaa 268  Q
    |||| || ||||| | |||| ||| | | |   |||| |||||||||||||  |||||||| | |||||||||||||||| ||||||||||||    
T  24841882 aaatcatgtaaattgaaaaatcaagacaacacgtgaaggatcaaggatatgtggattgaag-tcaatggttcttagaaggattttgaagacaa 24841973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 78 - 191
Target Start/End: Original strand, 19331540 - 19331651
Alignment:
Q  78 gtttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgaga 177  Q
    ||||||||||  ||||||||| |  ||||| |||||||||||||| | |||||||||||||||| ||| | |||  ||||||||||||||||| ||||||    
T  19331540 gtttgagaaactttttgtattgtgttcattcgagtcgttgtaatttagttttatcctaaatcatgcaattccat--gtgttttgagtcttttttgtgaga 19331637  T
Q  178 aataatataaatcg 191  Q
    ||| || |||||||    
T  19331638 aatcatgtaaatcg 19331651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 92 - 180
Target Start/End: Complemental strand, 29150977 - 29150890
Alignment:
Q  92 ttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaat 180  Q
    ||||||| || ||| |||| || |||||||||||||||||| |||||||| ||| |||||| ||||||||||| |||||||||||||||    
T  29150977 ttgtattattttcacttgaatcattgtaattcatttttatcttaaatcatgcaatttcataagtgttttgagt-tttttagtgagaaat 29150890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 78 - 269
Target Start/End: Original strand, 20083494 - 20083688
Alignment:
Q  78 gtttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtc--tttttagtga 175  Q
    ||||||| || ||||| |||| || | ||| ||||  |||||||||| || ||||||||||||| ||| | |||||||||||||||||  ||||||||||    
T  20083494 gtttgaggaacattttttattgtttttattcgagtatttgtaattcagttctatcctaaatcatgcaattccataggtgttttgagtctttttttagtga 20083593  T
Q  176 gaaataatataaatcggaaaagcaaaatatcttatg-aagatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
     |||| || |||||||| ||| ||||| |||   || ||||| ||||||||||| | ||||| | ||||||| ||| || || |||||| |||||    
T  20083594 aaaattatgtaaatcggcaaaacaaaacatcacgtgaaagattaaggatatgaaaaatgaagttcaatggtttttataaagtatttgaaaacaat 20083688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 78 - 161
Target Start/End: Original strand, 25680625 - 25680708
Alignment:
Q  78 gtttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttg 161  Q
    ||||||| || || ||||||| || ||| | |||||||||||||||| |||||| ||||||||| |||||||||||||||||||    
T  25680625 gtttgaggaacatattgtattgttttcactcgagtcgttgtaattcaattttattctaaatcatgcaacttcataggtgttttg 25680708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 152 - 269
Target Start/End: Original strand, 30072218 - 30072337
Alignment:
Q  152 aggtgttttgagt-ctttttagtgagaaataatataaatcggaaaagcaaaatatcttatgaag-atcaaggatatgaagattgaagataaatggttctt 249  Q
    ||||||||||||| |||| ||||| ||||| |||| |||||  ||| ||| | |||  |||||| ||||| |||||||||||||||||| ||||||||||    
T  30072218 aggtgttttgagtgctttgtagtgggaaatcatattaatcgacaaatcaagacatcacatgaaggatcaaagatatgaagattgaagattaatggttctt 30072317  T
Q  250 agaaggtttttgaagacaat 269  Q
    | ||||||||| ||||||||    
T  30072318 aaaaggtttttaaagacaat 30072337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 90 - 255
Target Start/End: Complemental strand, 15697410 - 15697245
Alignment:
Q  90 ttttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaataatataaat 189  Q
    ||||||||| || ||||||||| ||||| |||||| |||||||| ||||||| || ||  |||||| ||||||||||||||| | |||||| | ||||||    
T  15697410 ttttgtattgttttcatttgagacgttgcaattcagttttatccgaaatcatgcatctctataggtattttgagtctttttattaagaaatcagataaat 15697311  T
Q  190 cggaaaagcaaaatatcttatgaagatcaaggatatgaagattgaagataaatggttcttagaagg 255  Q
    | | ||| ||| | ||| | ||| ||   |||||||||| ||||||||| |||  || ||||||||    
T  15697310 ccgtaaaacaagacatcatgtgaggacttaggatatgaaaattgaagatcaatatttattagaagg 15697245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 109 - 180
Target Start/End: Complemental strand, 16603668 - 16603596
Alignment:
Q  109 gagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttt-tagtgagaaat 180  Q
    |||||||||||||| | ||||| |||||||||| ||| |||||||||||||||||| |||| |||||||||||    
T  16603668 gagtcgttgtaattaaattttagcctaaatcatgcaatttcataggtgttttgagtgttttctagtgagaaat 16603596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 216
Target Start/End: Original strand, 15205672 - 15205811
Alignment:
Q  78 gtttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttt-tagtgag 176  Q
    ||||||| || || ||||||| || ||| | |||||||||||||||| |||| ||||| ||||| ||| | |||||||||||||||| ||||  ||||||    
T  15205672 gtttgaggaacatattgtattgttttcactcgagtcgttgtaattcagttttctcctagatcatgcaattccataggtgttttgagtgttttgcagtgag 15205771  T
Q  177 aaataatataaatcggaaaagcaaaatatcttatgaagat 216  Q
     |||||| ||||||   ||| ||||| ||||| |||||||    
T  15205772 gaataatgtaaatcatcaaatcaaaacatcttgtgaagat 15205811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 169
Target Start/End: Original strand, 18222522 - 18222613
Alignment:
Q  78 gtttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttt 169  Q
    |||||||||| || ||||||| || | | | ||||| |||||||||| |||||||||||||||| ||| | |||||||||||||||| ||||    
T  18222522 gtttgagaaacatattgtattgttttaactcgagtcattgtaattcacttttatcctaaatcatgcaaatccataggtgttttgagtgtttt 18222613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 94 - 160
Target Start/End: Complemental strand, 23157858 - 23157792
Alignment:
Q  94 gtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgtttt 160  Q
    ||||| || |||||||||||||||||||||| ||||||| |||||||| ||| | ||||||||||||    
T  23157858 gtattgttttcatttgagtcgttgtaattcacttttatcataaatcatgcaaatgcataggtgtttt 23157792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 114 - 269
Target Start/End: Complemental strand, 16622717 - 16622570
Alignment:
Q  114 gttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaataatataaatcggaaaagcaaaatatcttatgaa 213  Q
    |||||||| || |||||||||| ||||| |||||||||||||||||||         |||||||||| || ||||| |  ||| ||| | |||  |||||    
T  16622717 gttgtaatacacttttatcctagatcatgcaacttcataggtgttttgc--------agtgagaaatcatgtaaattgacaaatcaagacatcacatgaa 16622626  T
Q  214 g-atcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    | || ||||||||||||||||||||  | |||||||||||||| |||||||||||||    
T  16622625 ggattaaggatatgaagattgaagaccagtggttcttagaagg-ttttgaagacaat 16622570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 92 - 265
Target Start/End: Original strand, 22229847 - 22230021
Alignment:
Q  92 ttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttt-tagtgagaaataatataaatc 190  Q
    ||||||| || ||| |||||||||||||||||| |||||||||| | ||| ||||| || | |||||||| || |||| ||||||| ||| || ||||||    
T  22229847 ttgtattgttttcacttgagtcgttgtaattcagttttatcctagaccatgcaactccacaagtgttttgggtattttgtagtgaggaatcatgtaaatc 22229946  T
Q  191 ggaaaagcaaaatatcttatgaa-gatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaaga 265  Q
       ||| ||| | |||   |||| |||||| |||||| | ||||||||| || ||||||||||||||| |||||||    
T  22229947 aacaaatcaagacatcacgtgaaggatcaaagatatgga-attgaagatcaagggttcttagaaggttgttgaaga 22230021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 269
Target Start/End: Complemental strand, 17695410 - 17695356
Alignment:
Q  215 atcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    ||||||| |||||| | ||||||| ||||||| ||||||||||||||||||||||    
T  17695410 atcaaggttatgaataatgaagatcaatggttattagaaggtttttgaagacaat 17695356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 118 - 190
Target Start/End: Original strand, 22754963 - 22755036
Alignment:
Q  118 taattcatttttatcctaaatcattcaacttcataggtgttttgagtctttt-tagtgagaaataatataaatc 190  Q
    ||||||| |||||||||| || || |||||||||||||||||||||| ||||  |||||||||| || ||||||    
T  22754963 taattcagttttatcctagattatgcaacttcataggtgttttgagtgttttgaagtgagaaatcatgtaaatc 22755036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 191
Target Start/End: Complemental strand, 24279638 - 24279598
Alignment:
Q  151 taggtgttttgagtctttttagtgagaaataatataaatcg 191  Q
    ||||||||||||||| |||||||||||||| ||||||||||    
T  24279638 taggtgttttgagtcattttagtgagaaatcatataaatcg 24279598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 191
Target Start/End: Original strand, 24382576 - 24382616
Alignment:
Q  151 taggtgttttgagtctttttagtgagaaataatataaatcg 191  Q
    ||||||||||||||| |||||||||||||| ||||||||||    
T  24382576 taggtgttttgagtcattttagtgagaaatcatataaatcg 24382616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 214 - 269
Target Start/End: Complemental strand, 18452760 - 18452705
Alignment:
Q  214 gatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    |||||| |||||||| ||||||||| ||||||||||| ||||||||| || |||||    
T  18452760 gatcaaagatatgaaaattgaagatcaatggttcttataaggttttttaaaacaat 18452705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 161
Target Start/End: Original strand, 24517414 - 24517466
Alignment:
Q  109 gagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttg 161  Q
    ||||||||||||||||  |||||||| ||||||  |||| |||||||||||||    
T  24517414 gagtcgttgtaattcacatttatccttaatcatgtaactccataggtgttttg 24517466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 78 - 269
Target Start/End: Complemental strand, 21829218 - 21829026
Alignment:
Q  78 gtttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgaga 177  Q
    ||||||| || |||||||||| || |||||||||||||||||||||| |||||||||||||||| |||||||||| | |||||| ||||| |||||||||    
T  21829218 gtttgaggaacattttgtattattttcatttgagtcgttgtaattcagttttatcctaaatcatacaacttcatatgagttttgggtcttgttagtgaga 21829119  T
Q  178 aataatataaatcggaaaagcaaaatatcttatgaag-atcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    |||  | |||||||   || ||| | |||  |||||| |||||||||||||||||||||||| |||||||| | |||||| ||||||||||||    
T  21829118 aatcttgtaaatcgtcgaaacaagacatcacatgaagtatcaaggatatgaagattgaagatcaatggttcatcgaaggtctttgaagacaat 21829026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 90 - 269
Target Start/End: Original strand, 11474887 - 11475068
Alignment:
Q  90 ttttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtc-tttttagtgagaaataatataaa 188  Q
    ||||||||| || ||||| || ||||||||||||| |||||||||||||||| |||||||||| |||||||||||| ||||||||||||||| || ||||    
T  11474887 ttttgtattattttcattcgactcgttgtaattcaattttatcctaaatcatgcaacttcatatgtgttttgagtcttttttagtgagaaatcatgtaaa 11474986  T
Q  189 tcggaaaagcaaaatatcttatgaa-gatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    |||| ||| ||| | |||  ||||| |||| | ||||||| |||| ||||||||||||||||||||| | ||||||||||||    
T  11474987 tcggcaaaacaagacatcacatgaaggatcgaagatatgaggattcaagataaatggttcttagaagatatttgaagacaat 11475068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 80 - 269
Target Start/End: Complemental strand, 23908354 - 23908164
Alignment:
Q  80 ttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaa 179  Q
    ||||| || |||||||||| || ||||| || ||||||||||||  |||||||| |||| || ||| |||||||||| ||||||||||| ||| ||||||    
T  23908354 ttgaggaacattttgtattgttttcattcgattcgttgtaattcccttttatccaaaataatgcaatttcataggtgctttgagtctttctagggagaaa 23908255  T
Q  180 taatataaatcggaaaagcaaaatatcttatgaa-gatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    | || |||| ||| ||||||| | |||| ||||| ||||||| ||||||||||| ||||| ||||||| |||||| |||||||||||||||    
T  23908254 tcatgtaaagcggcaaagcaagacatctcatgaaggatcaagaatatgaagatttaagatcaatggtttttagaaagtttttgaagacaat 23908164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 109 - 269
Target Start/End: Complemental strand, 19219266 - 19219104
Alignment:
Q  109 gagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttt-tagtgagaaataatataaatcggaaaagcaaaatatct 207  Q
    |||||||||||||||| |||||||| ||||||| ||||  ||||  |||||||||| |||| ||||||| ||| || ||||||   ||| ||| | |||     
T  19219266 gagtcgttgtaattcacttttatccaaaatcatgcaacaccataaatgttttgagtgttttgtagtgaggaatcatgtaaatcttcaaaccaagacatca 19219167  T
Q  208 tatgaa-gatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
     ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  19219166 catgaaggatcaaggatatgaagattgaagatcaatggttcttagaaggtttttgaagacaat 19219104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 78 - 249
Target Start/End: Complemental strand, 26387930 - 26387758
Alignment:
Q  78 gtttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgaga 177  Q
    ||||||||||  ||||||||| || ||||||| ||||| |||||| | |||||||||||||||| ||||| ||||| ||||||||||||||||| |||||    
T  26387930 gtttgagaaacgttttgtattcttttcatttgtgtcgtagtaattaagttttatcctaaatcatgcaactccatagatgttttgagtctttttaatgaga 26387831  T
Q  178 aataatataaatcggaaaagcaaaatatcttatgaa-gatcaaggatatgaagattgaagataaatggttctt 249  Q
    ||| || |||||| |  || ||| | |||   |||| |||||| |||||||| ||||||||| ||||||||||    
T  26387830 aatcatgtaaatcagctaaacaagacatcaagtgaaggatcaaagatatgaatattgaagattaatggttctt 26387758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 78 - 169
Target Start/End: Complemental strand, 8402636 - 8402545
Alignment:
Q  78 gtttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttt 169  Q
    ||||||| || | |||||||| || ||||| |||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||    
T  8402636 gtttgaggaacaatttgtattgttttcattcgagtcgttgtaattcatttttatcttaaatcatgcaactccataggtgttttgagtctttt 8402545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 78 - 235
Target Start/End: Original strand, 26297778 - 26297934
Alignment:
Q  78 gtttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgaga 177  Q
    ||||||||||  |||| |||| || ||||| |||||||||||||||| |||||||||||||||| ||||||||||  ||| |||||||| |||||||| |    
T  26297778 gtttgagaaactttttatattgttttcattcgagtcgttgtaattcaattttatcctaaatcatgcaacttcata--tgtgttgagtctatttagtgata 26297875  T
Q  178 aataatataaatcggaaaagcaaaatatcttatgaa-gatcaaggatatgaagattgaa 235  Q
    ||| || |||||||| ||| ||| | |||   |||| |||| |||||||||||||||||    
T  26297876 aatcatgtaaatcggcaaaacaagacatcaagtgaaggatcgaggatatgaagattgaa 26297934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 79 - 179
Target Start/End: Complemental strand, 30493349 - 30493249
Alignment:
Q  79 tttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaa 178  Q
    |||||||||  ||||||||| || ||||| ||||||||||| || | |||||||||||||||| ||| | ||| ||||||||||||||||||||||||||    
T  30493349 tttgagaaactttttgtattgttttcattcgagtcgttgtagtttagttttatcctaaatcatgcaaatccatgggtgttttgagtctttttagtgagaa 30493250  T
Q  179 a 179  Q
    |    
T  30493249 a 30493249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 115 - 269
Target Start/End: Original strand, 18474236 - 18474391
Alignment:
Q  115 ttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaataatataaatcggaaaagcaaaatatcttatgaa- 213  Q
    |||||||||| | |||||||||||||| ||||| ||||||||||||||||||||| |||||||||| || |||||||| ||  ||| | ||   |||||     
T  18474236 ttgtaattcactgttatcctaaatcatgcaactccataggtgttttgagtcttttcagtgagaaatcatgtaaatcgggaacacaagacattacatgaag 18474335  T
Q  214 gatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    |||| | ||| | |||||||||  | |||||| |||||||||| ||||||||||||    
T  18474336 gatcgaagatgtaaagattgaatttcaatggtacttagaaggtatttgaagacaat 18474391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 158 - 265
Target Start/End: Original strand, 26418829 - 26418937
Alignment:
Q  158 tttgagtctttttagtgagaaataatataaatcggaaaagcaaaatatcttatgaag-atcaaggatatgaagattgaagataaatggttcttagaaggt 256  Q
    ||||| ||||||||||||||||| || ||||||||||||  || | |||  |||||| |||||||||||||||||| |||||  ||||||||||||||||    
T  26418829 tttgaatctttttagtgagaaatcatgtaaatcggaaaaataagacatcgcatgaaggatcaaggatatgaagattaaagattgatggttcttagaaggt 26418928  T
Q  257 ttttgaaga 265  Q
    |||| ||||    
T  26418929 ttttaaaga 26418937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 90 - 243
Target Start/End: Original strand, 33577775 - 33577930
Alignment:
Q  90 ttttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaataatataaat 189  Q
    ||||||||| || | |||||| || ||||||||||||| ||||||||||||| |||| |||| |||| ||||||||||||||  || |||  || |||||    
T  33577775 ttttgtattgtttttatttgattcattgtaattcatttatatcctaaatcatgcaacctcattggtggtttgagtctttttaaagaaaaaacatgtaaat 33577874  T
Q  190 cggaaaagcaaaatatcttatgaa-gatcaagg-atatgaagattgaagataaatg 243  Q
    ||| |||| || | |||  ||||| |||||||| ||||||||| ||||||||||||    
T  33577875 cggcaaagtaagacatcacatgaaggatcaaggtatatgaagaatgaagataaatg 33577930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 65 - 269
Target Start/End: Original strand, 13911281 - 13911478
Alignment:
Q  65 agagttgtccaacgtttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagt 164  Q
    ||||||||| |  ||||||| || || | ||||| || ||| |||| || |||||||||| |||||||||| ||||| |||||||||| ||||||| |||    
T  13911281 agagttgtcaatggtttgaggaacatatggtattgttttcacttgaatcattgtaattcacttttatcctagatcatgcaacttcatatgtgtttttagt 13911380  T
Q  165 ctttt-tagtgagaaataatataaatcggaaaagcaaaatatcttatgaag-atcaaggatatgaagattgaagataaatggttcttagaaggtttttga 262  Q
     |||| ||||||||||| || ||||||        || | ||||||||||| |||||||||||||||||| ||  |||||||||||||||||  |||| |    
T  13911381 gttttgtagtgagaaatcatgtaaatc--------aagacatcttatgaaggatcaaggatatgaagattaaat-taaatggttcttagaagaattttca 13911471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 89 - 269
Target Start/End: Original strand, 19285139 - 19285319
Alignment:
Q  89 attttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaataatataaa 188  Q
    |||||||||| || ||||| |||||||||||||||| |||| |||||||||   ||||| | ||||||||| |||||| ||| |||||| ||  | ||||    
T  19285139 attttgtattattttcattcgagtcgttgtaattcaattttgtcctaaatccagcaactccttaggtgtttcgagtctctttcgtgagatatcgtgtaaa 19285238  T
Q  189 tcggaaaagcaaaatatcttatg-aagatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    || ||||| ||| |||||  ||| | |||| | ||||| ||||||||  || |||||||||| |||||| ||||||||||||    
T  19285239 tcagaaaaacaagatatcaaatgtaggatcga-gatatcaagattgataatcaatggttcttggaaggtatttgaagacaat 19285319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 103 - 191
Target Start/End: Complemental strand, 26797308 - 26797221
Alignment:
Q  103 tcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaataatataaatcg 191  Q
    ||||| |||||||| ||||||  |||||||||||||||| |||||||||||||| ||||||||||||||| |||| || || |||||||    
T  26797308 tcattcgagtcgttataattctgttttatcctaaatcatgcaacttcataggtg-tttgagtctttttagagagatatcatgtaaatcg 26797221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 112 - 269
Target Start/End: Original strand, 25883166 - 25883324
Alignment:
Q  112 tcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttt-tagtgagaaataatataaatcggaaaagcaaaatatcttat 210  Q
    ||||||||||||| |||||||||| || || ||||| |||||||||||||||| |||| ||||||| ||| || || |||   ||| ||| | ||||| |    
T  25883166 tcgttgtaattcagttttatcctagattatgcaactacataggtgttttgagtgttttatagtgaggaatcatgtacatcatcaaatcaagacatcttgt 25883265  T
Q  211 gaa-gatcaaggatatgaag-attgaagataaatggttcttagaaggtttttgaagacaat 269  Q
     || ||||||||  |||||| ||||||||| || ||||||||||||||| |||||||||||    
T  25883266 taaggatcaagg--atgaagaattgaagatcaagggttcttagaaggttgttgaagacaat 25883324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 109 - 169
Target Start/End: Complemental strand, 2729673 - 2729613
Alignment:
Q  109 gagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttt 169  Q
    ||||| ||||||||||||||||||||||| ||| |||||||||| ||||||||||| ||||    
T  2729673 gagtccttgtaattcatttttatcctaaaccatgcaacttcatatgtgttttgagtgtttt 2729613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 214 - 260
Target Start/End: Complemental strand, 19263855 - 19263809
Alignment:
Q  214 gatcaaggatatgaagattgaagataaatggttcttagaaggttttt 260  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||    
T  19263855 gatcaaggatatgaagattgaagatcaatggttcatagaaggttttt 19263809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 107 - 265
Target Start/End: Complemental strand, 25919519 - 25919369
Alignment:
Q  107 ttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaataatataaatcggaaaagcaaaatatc 206  Q
    ||||||| | |||||||| |||||||||||||||| ||||| ||||| |||||||        ||||||| ||| || |||||||  ||| ||| |||||    
T  25919519 ttgagtcatcgtaattcacttttatcctaaatcatgcaactccatagatgttttg--------tagtgaggaatcatgtaaatcgacaaaccaagatatc 25919428  T
Q  207 ttatgaa-gatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaaga 265  Q
      ||||| ||||||||||||||||||||||||| || | || |||||| |||||||||||    
T  25919427 acatgaaggatcaaggatatgaagattgaagatcaacgatttttagaa-gtttttgaaga 25919369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 189
Target Start/End: Original strand, 27415236 - 27415309
Alignment:
Q  117 gtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttt-tagtgagaaataatataaat 189  Q
    |||||||| ||||||| |||||||| |||||||||||||||||||||| |||| |||| |||||| || |||||    
T  27415236 gtaattcacttttatcgtaaatcatgcaacttcataggtgttttgagtgttttgtagtaagaaatcatgtaaat 27415309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 90 - 161
Target Start/End: Complemental strand, 5632607 - 5632536
Alignment:
Q  90 ttttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttg 161  Q
    |||||| || || |||||||| ||||||||||||| ||||||| | |||||| ||||| |||||||||||||    
T  5632607 ttttgtgttgttttcatttgattcgttgtaattcacttttatcttgaatcatgcaactccataggtgttttg 5632536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 218 - 269
Target Start/End: Original strand, 10341957 - 10342008
Alignment:
Q  218 aaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    |||||||  |||||||||||| | ||||||||||||||||||||||||||||    
T  10341957 aaggatagaaagattgaagatcagtggttcttagaaggtttttgaagacaat 10342008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 103 - 170
Target Start/End: Original strand, 16970293 - 16970360
Alignment:
Q  103 tcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtcttttt 170  Q
    |||||| |||||||||||||||  |||||||||||||||  |||||||| ||||||| |||| |||||    
T  16970293 tcatttaagtcgttgtaattcacgtttatcctaaatcataaaacttcatgggtgtttagagtgttttt 16970360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 265
Target Start/End: Original strand, 16970628 - 16970679
Alignment:
Q  214 gatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaaga 265  Q
    |||||||||||||||| |||||||  || |||||||||||||||||||||||    
T  16970628 gatcaaggatatgaagtttgaagaccaacggttcttagaaggtttttgaaga 16970679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 164
Target Start/End: Complemental strand, 4780759 - 4780687
Alignment:
Q  92 ttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagt 164  Q
    ||||||| || ||| |||| || |||||||||| | |||||||| ||||||||||||||||| | ||||||||    
T  4780759 ttgtattgttttcacttgaatcattgtaattcactcttatcctacatcattcaacttcatagatattttgagt 4780687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 110 - 161
Target Start/End: Original strand, 10341856 - 10341907
Alignment:
Q  110 agtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttg 161  Q
    ||||||||||||||| |||||| | ||||||| ||||| |||||||||||||    
T  10341856 agtcgttgtaattcacttttattcaaaatcatgcaactccataggtgttttg 10341907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 90 - 169
Target Start/End: Complemental strand, 27374525 - 27374446
Alignment:
Q  90 ttttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttt 169  Q
    ||||||||| || ||||| ||||| || |||| || |||||||||||||||| ||||||| |||||  ||||| ||||||    
T  27374525 ttttgtattgttttcattcgagtcattataatccagttttatcctaaatcatgcaacttcgtaggttatttgaatctttt 27374446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 147
Target Start/End: Complemental strand, 1475366 - 1475297
Alignment:
Q  78 gtttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaact 147  Q
    ||||||| ||||| ||||||| || ||| | |||||||||||||||| || ||||||| ||||| |||||    
T  1475366 gtttgaggaatatattgtattattttcactcgagtcgttgtaattcaattatatcctagatcatgcaact 1475297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 149
Target Start/End: Original strand, 12409501 - 12409558
Alignment:
Q  92 ttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttc 149  Q
    ||||||| || ||| |||||||||||||||||||||||||| |  ||||| |||||||    
T  12409501 ttgtattattttcacttgagtcgttgtaattcatttttatcttggatcatgcaacttc 12409558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 190
Target Start/End: Original strand, 12573319 - 12573432
Alignment:
Q  78 gtttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttt-tagtgag 176  Q
    ||||||| |||  |||||||| || ||| | ||| ||||||||||||||||||||||| ||||| || || | ||||| |||| ||| |||| |||||||    
T  12573319 gtttgaggaatgctttgtattgttttcactcgagacgttgtaattcatttttatcctagatcatgcagctccgtaggtttttttagtgttttgtagtgag 12573418  T
Q  177 aaataatataaatc 190  Q
     ||| || ||||||    
T  12573419 gaatcatgtaaatc 12573432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 190
Target Start/End: Original strand, 13549783 - 13549896
Alignment:
Q  78 gtttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttt-tagtgag 176  Q
    ||||||| |||  |||||||| || ||| | ||| ||||||||||||||||||||||| ||||| || || | ||||| |||| ||| |||| |||||||    
T  13549783 gtttgaggaatgctttgtattgttttcactcgagacgttgtaattcatttttatcctagatcatgcagctccgtaggtttttttagtgttttgtagtgag 13549882  T
Q  177 aaataatataaatc 190  Q
     ||| || ||||||    
T  13549883 gaatcatgtaaatc 13549896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 164
Target Start/End: Complemental strand, 23007150 - 23007065
Alignment:
Q  79 tttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagt 164  Q
    |||||| ||||| ||||||| || ||  | ||||| || ||| ||| |||||||||||||||| ||||| ||||| ||||||||||    
T  23007150 tttgaggaatatattgtattgttttccctcgagtcattataaatcacttttatcctaaatcatacaactccatagatgttttgagt 23007065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 4775763 - 4775719
Alignment:
Q  108 tgagtcgttgtaattcatttttatcctaaatcattcaacttcata 152  Q
    ||||||||||||||||| | |||||||| ||||| ||||||||||    
T  4775763 tgagtcgttgtaattcactcttatcctagatcatgcaacttcata 4775719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 169
Target Start/End: Original strand, 21017937 - 21017997
Alignment:
Q  109 gagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttt 169  Q
    |||||||||||||||| |||||||||| ||||| |||||  | | ||||||||||| ||||    
T  21017937 gagtcgttgtaattcagttttatcctagatcatgcaactctaaatgtgttttgagtgtttt 21017997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 112 - 269
Target Start/End: Complemental strand, 25727961 - 25727802
Alignment:
Q  112 tcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttt-tagtgagaaataatataaatcggaaaagcaaaatatcttat 210  Q
    ||||||||||||| |||||||||||||||| |||||  ||||||||||||||| |||| ||||||||||| || |||||||  ||| ||| |||||  ||    
T  25727961 tcgttgtaattcacttttatcctaaatcatgcaactcaataggtgttttgagtgttttgtagtgagaaatcatgtaaatcgacaaatcaatatatcacat 25727862  T
Q  211 gaag-atcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    |||| || ||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  25727861 gaaggattaaggatatgaagattgaagatcaatggttcttggaaggtttttgaagacaat 25727802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 112 - 269
Target Start/End: Complemental strand, 25736369 - 25736210
Alignment:
Q  112 tcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttt-tagtgagaaataatataaatcggaaaagcaaaatatcttat 210  Q
    ||||||||||||| |||||||||||||||| |||||  ||||||||||||||| |||| ||||||||||| || |||||||  ||| ||| |||||  ||    
T  25736369 tcgttgtaattcacttttatcctaaatcatgcaactcaataggtgttttgagtgttttgtagtgagaaatcatgtaaatcgacaaatcaatatatcacat 25736270  T
Q  211 gaag-atcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    |||| || ||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  25736269 gaaggattaaggatatgaagattgaagatcaatggttcttggaaggtttttgaagacaat 25736210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 110 - 269
Target Start/End: Original strand, 31313613 - 31313773
Alignment:
Q  110 agtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaataatataaatcggaaaagcaaaatatctta 209  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||| |||||| || ||||| |||||| ||| | |||       
T  31313613 agtcgttgtaattcacttttatcctaaatcatgcaacttcataggtgttttgagtttttttagtaagaaatcatgtaaattggaaaaacaatacatcacg 31313712  T
Q  210 tgaa-gatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    |||| ||| ||| ||||||||| ||||||| |||| |||||| ||||||||||||||||||    
T  31313713 tgaaggattaagaatatgaagaatgaagatcaatgattcttataaggtttttgaagacaat 31313773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 89 - 269
Target Start/End: Original strand, 26102097 - 26102278
Alignment:
Q  89 attttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaataatataaa 188  Q
    |||||||||| || ||||| |||| ||||||||||| |||||||||||||||| ||||| ||| ||||||||||||||||||||||||| ||  |  |||    
T  26102097 attttgtattgttttcattcgagttgttgtaattcacttttatcctaaatcatgcaactccatgggtgttttgagtctttttagtgagatatcgtgcaaa 26102196  T
Q  189 tcggaaaagcaaaatatcttatgaa-gatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    |||  ||| ||| | |||   |||| ||||||||||||||||| ||||||| |||| || ||||||||||||||||||||||    
T  26102197 tcgacaaaacaagacatcacgtgaatgatcaaggatatgaagaatgaagatcaatgatttttagaaggtttttgaagacaat 26102278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 111 - 269
Target Start/End: Complemental strand, 11770047 - 11769887
Alignment:
Q  111 gtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtcttttt-agtgagaaataatataaatcggaaaagcaaaatatctta 209  Q
    |||||||||||||| ||||||||||||||||  |||||||| ||||| |||||| ||||  |||||||||| || ||||||| |||| ||| | |||  |    
T  11770047 gtcgttgtaattcacttttatcctaaatcatgaaacttcatgggtgtgttgagtgttttgcagtgagaaatcatgtaaatcgaaaaatcaagacatcaca 11769948  T
Q  210 tgaa-gatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    |||| |||||| |||||||||||||||||  ||||||||||||||||||||||||||||||    
T  11769947 tgaatgatcaaagatatgaagattgaagaccaatggttcttagaaggtttttgaagacaat 11769887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 79 - 269
Target Start/End: Complemental strand, 27461266 - 27461074
Alignment:
Q  79 tttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaa 178  Q
    |||||| || |||||||||| || |||||  ||| ||| ||||||| ||||||||||||| || |||||||||||||||||  |||||||||||| ||||    
T  27461266 tttgaggaacattttgtattgttttcattcaagttgttataattcacttttatcctaaattatgcaacttcataggtgtttgtagtctttttagtaagaa 27461167  T
Q  179 ataatataaatcggaaaag-caaaatatcttatgaa-gatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    || || ||| ||||||||  ||| | |||  ||||| |||| |||||||||||  ||||||| ||||||||||| ||||||||||||||||||    
T  27461166 atcatgtaagtcggaaaaaacaagacatcacatgaaagatcgaggatatgaagtatgaagatcaatggttcttaaaaggtttttgaagacaat 27461074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 90 - 269
Target Start/End: Complemental strand, 26854391 - 26854213
Alignment:
Q  90 ttttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaataatataaat 189  Q
    ||||||||| || |||||  ||||||||||||||| ||||||||||| |||| ||||||||||| |||||||||||||||||  ||||||| || ||||     
T  26854391 ttttgtattcttttcattcaagtcgttgtaattcaattttatcctaattcatacaacttcatagatgttttgagtcttttta--gagaaatcatgtaaac 26854294  T
Q  190 cggaaaagcaaaatatcttatgaa-gatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    ||| ||| ||| | ||    |||| |||||| |||||||||||||||| | ||||||||||||||| | ||||||||||||    
T  26854293 cggcaaaacaagacattaagtgaaggatcaatgatatgaagattgaagttcaatggttcttagaagatatttgaagacaat 26854213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 93 - 269
Target Start/End: Complemental strand, 52271315 - 52271138
Alignment:
Q  93 tgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaataatataaatcgg 192  Q
    |||| |||| |||||| ||||||||| ||||| |||  |||||||| || ||||| ||||| |||||||||||||||||||||||||| || ||||||||    
T  52271315 tgtacttttttcatttaagtcgttgtcattcactttattcctaaattatgcaactccatagatgttttgagtctttttagtgagaaattatgtaaatcgg 52271216  T
Q  193 aaaagcaaaatatcttatgaa-gatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
     ||| |||||   |   |||| |||| |||||||||||||||||| | |||||| |||||||||| ||||||||||||    
T  52271215 caaaacaaaacgccacgtgaaggatcgaggatatgaagattgaagttcaatggtacttagaaggtatttgaagacaat 52271138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 119 - 269
Target Start/End: Complemental strand, 25730616 - 25730464
Alignment:
Q  119 aattcatttttatcctaaatcattcaacttcataggtgttttgagtctttt-tagtgagaaataatataaatcggaaaagcaaaatatcttatgaag-at 216  Q
    |||||| |||||||||||||||| |||||||| ||||||||||||| |||| ||| ||||||| || |||||||  ||| ||| |||||  |||||| ||    
T  25730616 aattcaattttatcctaaatcatgcaacttcacaggtgttttgagtgttttgtagcgagaaatcatgtaaatcgacaaatcaagatatcacatgaaggat 25730517  T
Q  217 caaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    |||||| ||||||||| ||||| |||||||||| |||||||||||| ||||||    
T  25730516 caaggagatgaagatttaagatcaatggttcttggaaggtttttgacgacaat 25730464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 65 - 264
Target Start/End: Complemental strand, 15298968 - 15298768
Alignment:
Q  65 agagttgtccaacgtttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagt 164  Q
    ||||||||| |  ||||||| ||  ||||||||| |  |||||||| || |||||||| | |||||||| ||||||| ||||||||||||||||||| ||    
T  15298968 agagttgtcaatggtttgaggaagtttttgtattgtattcatttgaatcattgtaattaagttttatccaaaatcatgcaacttcataggtgttttgtgt 15298869  T
Q  165 ctttttagtgagaaataatataaatcggaaaagcaaaatatcttatgaa-gatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaa 263  Q
    || |||||||| |||| || |||||||| ||| ||| | ||| | | || |||| |||||||||||||| ||||| ||||||||||| ||| | ||||||    
T  15298868 ctatttagtgataaatcatgtaaatcggcaaaacaagaaatcatgtaaaggatcgaggatatgaagattcaagatcaatggttcttaaaagttatttgaa 15298769  T
Q  264 g 264  Q
    |    
T  15298768 g 15298768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 78 - 265
Target Start/End: Original strand, 30675513 - 30675701
Alignment:
Q  78 gtttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttt-tagtgag 176  Q
    ||||||| || || ||||||| || ||| | ||||||||||||| || |||| ||||| ||||| ||||| |||||||||||||||| |||| |||||||    
T  30675513 gtttgaggaacatattgtattgttttcactcgagtcgttgtaatacacttttgtcctatatcatgcaactccataggtgttttgagtgttttatagtgag 30675612  T
Q  177 aaataatataaatcggaaaagcaaaatatcttatgaa-gatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaaga 265  Q
    |||| || |||||||| ||   || | ||| | |||| ||||||| || ||||||||||| || ||||||||||||||||||||||||||    
T  30675613 aaatcatgtaaatcggcaatttaagacatcatgtgaaggatcaagaatgtgaagattgaa-atcaatggttcttagaaggtttttgaaga 30675701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 103 - 257
Target Start/End: Original strand, 34381762 - 34381920
Alignment:
Q  103 tcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttt---tagtgagaaataatataaatcggaaaagca 199  Q
    ||||| |||||||||||||||| || ||| ||||||||  |||||||||||||||||||||| ||||   |||||| ||||||| |||||||  ||| ||    
T  34381762 tcattcgagtcgttgtaattcacttctattctaaatcacgcaacttcataggtgttttgagtattttgtatagtgaaaaataatgtaaatcgacaaatca 34381861  T
Q  200 aaatatcttatg-aagatcaaggatatgaagattgaagataaatggttcttagaaggtt 257  Q
    ||| |||   || |||||||||||||||||| |||||||| ||||||| ||| ||||||    
T  34381862 aaacatcacgtgaaagatcaaggatatgaagtttgaagatcaatggttgttataaggtt 34381920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 78 - 269
Target Start/End: Complemental strand, 15417059 - 15416866
Alignment:
Q  78 gtttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgaga 177  Q
    |||||||||| ||||| |||| || |||||  | || || ||||||| ||||||| |||||||| |||||  ||||||||||||||||||||||  |  |    
T  15417059 gtttgagaaacattttttattgttttcattcaattcattttaattcacttttatcttaaatcatgcaactgtataggtgttttgagtctttttatagtca 15416960  T
Q  178 aataatataaatcggaaaagcaaaatatcttatgaa-gatcaa-ggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    ||| || ||| |||| ||||||| | | |  ||||| |||||| ||||||||||| ||||||| ||||||||||| ||||||||| ||||||||    
T  15416959 aatcatgtaattcggcaaagcaagacaccacatgaaggatcaagggatatgaagaatgaagatcaatggttcttataaggtttttaaagacaat 15416866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 78 - 254
Target Start/End: Original strand, 21548677 - 21548854
Alignment:
Q  78 gtttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgaga 177  Q
    ||||||||||  |||| |||| || ||||| |||||||||||||||| ||||||||||||  || ||||| |||| |||||| |||||||| ||||| ||    
T  21548677 gtttgagaaactttttatattgttttcattcgagtcgttgtaattcagttttatcctaaaaaatgcaactccataagtgtttggagtctttctagtgtga 21548776  T
Q  178 aataatataaatcggaaaagcaaaatatcttatgaag-atcaaggatatgaagattgaagataaatggttcttagaag 254  Q
    ||| |  |||||||||||| ||| | |||   | ||| ||   ||||||||||||||||| |||||||||||||||||    
T  21548777 aatcaagtaaatcggaaaaacaagacatcacgtaaagaattgtggatatgaagattgaagctaaatggttcttagaag 21548854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 78 - 260
Target Start/End: Original strand, 18795210 - 18795393
Alignment:
Q  78 gtttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgaga 177  Q
    ||||||| || |||||||||  || ||||||||||  |||||||| | ||||||||||| |||| || |||||||||||||||||||| |||||||||||    
T  18795210 gtttgaggaacattttgtatcgttttcatttgagtaattgtaatttacttttatcctaagtcatacagcttcataggtgttttgagtcattttagtgaga 18795309  T
Q  178 aataatataaatcggaaaagcaaaatatcttatga-agatcaaggatatgaagattgaagataaatggttcttagaaggttttt 260  Q
    |||  | |||||| | ||| ||| | |||  ||||  |||||| |||||||| | ||||||| |||| ||||  ||||||||||    
T  18795310 aatcgtgtaaatcagcaaaacaagacatcacatgatggatcaaagatatgaaaagtgaagatgaatgattctatgaaggttttt 18795393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 93 - 269
Target Start/End: Complemental strand, 19257874 - 19257699
Alignment:
Q  93 tgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaataatataaatcgg 192  Q
    |||||| || |||||  |||| |||||||||  |||||||||||||||| ||| | | |||||||||||||| |||||||||||||||  | ||||| ||    
T  19257874 tgtattgttttcattctagtcattgtaattcgattttatcctaaatcatgcaagtccttaggtgttttgagtatttttagtgagaaatcgtgtaaattgg 19257775  T
Q  193 aaaagcaaaatatcttatg-aagatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
     | | ||| | |||  ||| |||||| ||||||||||||||||| || ||  ||||||||||||| ||||||||||||    
T  19257774 cataacaagacatcacatgaaagatcgaggatatgaagattgaacatcaa--gttcttagaaggtctttgaagacaat 19257699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 110 - 269
Target Start/End: Complemental strand, 18301057 - 18300896
Alignment:
Q  110 agtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtcttttta-gtgagaaataatataaatcggaaaagcaaaatatctt 208  Q
    ||||||||||||| | |||||||  ||||||| |||||||||||||||||||||| |||| | ||||  ||| || ||||| |  ||| ||| | |||      
T  18301057 agtcgttgtaattgacttttatcgaaaatcatgcaacttcataggtgttttgagtgttttaaagtgatgaatcatgtaaatagacaaatcaagacatcac 18300958  T
Q  209 atgaag-atcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
     ||||| |||||||||||||||||| || |  ||||||||||||||||||||||||||||||    
T  18300957 gtgaaggatcaaggatatgaagattaaataccaatggttcttagaaggtttttgaagacaat 18300896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 78 - 189
Target Start/End: Original strand, 25126509 - 25126620
Alignment:
Q  78 gtttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgaga 177  Q
    ||||||||||| ||||||||| || | ||||||||||| |||||||| ||||||||||||||||   | |  ||| |||||||||||||||||| |||||    
T  25126509 gtttgagaaattttttgtattgtttttatttgagtcgtggtaattcagttttatcctaaatcatgtgattatatatgtgttttgagtctttttaatgaga 25126608  T
Q  178 aataatataaat 189  Q
    ||| || |||||    
T  25126609 aatcatgtaaat 25126620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 107 - 269
Target Start/End: Complemental strand, 25494536 - 25494382
Alignment:
Q  107 ttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaataatataaatcggaaaagcaaaatatc 206  Q
    ||||||| |||||||| | |||||||||||||||| ||||| |||||||||||||        ||||||||||| || |||||||  ||| ||| | |||    
T  25494536 ttgagtccttgtaatttacttttatcctaaatcatgcaactacataggtgttttg--------tagtgagaaatcatgtaaatcgacaaatcaagacatc 25494445  T
Q  207 ttatgaag-atcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
      || ||| | |||| ||||||||||||||||  ||||||||||||||||||||||||||||||    
T  25494444 acattaaggagcaag-atatgaagattgaagaccaatggttcttagaaggtttttgaagacaat 25494382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 83 - 269
Target Start/End: Original strand, 30781794 - 30781981
Alignment:
Q  83 agaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttt-tagtgagaaata 181  Q
    |||||||| ||||||| || ||| | ||| | |||||||||| |||||||| | ||||| ||||| |||||||||||||||| |||| ||||||| |||     
T  30781794 agaaatatattgtattgttttcaatcgagacattgtaattcagttttatccaagatcatacaactccataggtgttttgagtgttttgtagtgaggaatc 30781893  T
Q  182 atataaatcggaaaagcaaaatatcttatgaa-gatcaaggatatgaag-attgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    || ||||||   ||| ||| | ||| | |||| ||||||||  |||||| ||||||||| || |||||||| |||||| |||||||||||    
T  30781894 atgtaaatcatcaaatcaagacatcatgtgaaggatcaagg--atgaagaattgaagatcaagggttcttaaaaggttgttgaagacaat 30781981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 78 - 268
Target Start/End: Original strand, 26657505 - 26657696
Alignment:
Q  78 gtttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttt-tagtgag 176  Q
    ||||||| |||||  |||||| || ||| | || ||||||||||||| |||||||||| ||||  ||||| |||||||||||||||| |||| ||||||     
T  26657505 gtttgaggaatataatgtattgttttcactcgattcgttgtaattcacttttatcctagatcacgcaactccataggtgttttgagtgttttgtagtgaa 26657604  T
Q  177 aaataatataaatcggaaaagcaaaatatcttatgaa-gatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaa 268  Q
    |||| || |||||||  ||| ||| | ||    |||| |||||||| |||||| || |||| | ||| ||||||| |||||||||||||||||    
T  26657605 aaatcatgtaaatcgacaaatcaagacattaggtgaaggatcaaggctatgaaaatcgaag-tcaatagttcttataaggtttttgaagacaa 26657696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 161
Target Start/End: Original strand, 12810351 - 12810434
Alignment:
Q  78 gtttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttg 161  Q
    ||||||| || || ||||||| || |||||  |||||||||||||||||||||||||| ||||| ||| ||| |||||||||||    
T  12810351 gtttgaggaacatattgtattgttttcattcaagtcgttgtaattcatttttatcctagatcatgcaatttcgtaggtgttttg 12810434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 189
Target Start/End: Original strand, 18391111 - 18391222
Alignment:
Q  78 gtttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgaga 177  Q
    ||||||| || ||||| |||| || |||||||||||||||||||| | |||||||||| ||||| ||| | |||||| |||| |||| |||||||  |||    
T  18391111 gtttgagtaacattttatattattttcatttgagtcgttgtaattaacttttatcctagatcatgcaattccataggcgtttagagtatttttaggaaga 18391210  T
Q  178 aataatataaat 189  Q
    ||| || |||||    
T  18391211 aatcatgtaaat 18391222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 269
Target Start/End: Original strand, 25373862 - 25373967
Alignment:
Q  165 ctttttagtgagaaataatataaatcggaaaagcaaaatatcttatgaag-atcaaggatatgaagattgaagataaatggttcttagaaggtttttgaa 263  Q
    |||||||| |||||||||| |||||||| |||  |||| |||   ||||| ||| |||||||||||||| ||||  |||||||||||||||||| || ||    
T  25373862 ctttttagagagaaataatgtaaatcggcaaaagaaaacatcaattgaaggatccaggatatgaagattaaagaccaatggttcttagaaggttgtttaa 25373961  T
Q  264 gacaat 269  Q
    ||||||    
T  25373962 gacaat 25373967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 89 - 169
Target Start/End: Complemental strand, 13807827 - 13807747
Alignment:
Q  89 attttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttt 169  Q
    |||||||||| || |||||  |||||||||||||||  || ||||  |||||| ||||||||||| |||||||||||||||    
T  13807827 attttgtattgttttcattcaagtcgttgtaattcacgttcatccctaatcatgcaacttcatagttgttttgagtctttt 13807747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 112 - 269
Target Start/End: Original strand, 23223475 - 23223635
Alignment:
Q  112 tcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttt-tagtgagaaataatataaatcggaaaagcaaaatatcttat 210  Q
    ||||||||||| | |||||||||||||||| ||||| || ||||||||| | | |||| ||||||||||| || ||||||   ||  ||| | |||  ||    
T  23223475 tcgttgtaatttacttttatcctaaatcatgcaactccaaaggtgtttttaatgttttgtagtgagaaatcatgtaaatcaacaagtcaagacatcgcat 23223574  T
Q  211 gaaga-tcaaggatatgaagattgaagataaatggttcttagaagg-tttttgaagacaat 269  Q
    ||||| |||||||||||||||||||| |  |||  ||| ||||||| ||||||||||||||    
T  23223575 gaagattcaaggatatgaagattgaaaaccaataattcatagaaggttttttgaagacaat 23223635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 124
Target Start/End: Complemental strand, 25965460 - 25965414
Alignment:
Q  78 gtttgagaaatattttgtatttttctcatttgagtcgttgtaattca 124  Q
    ||||||| ||||||||||||| |||||||| ||||||||||||||||    
T  25965460 gtttgagcaatattttgtattcttctcattcgagtcgttgtaattca 25965414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 169
Target Start/End: Original strand, 50047211 - 50047301
Alignment:
Q  79 tttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttt 169  Q
    ||||||||| || ||||||| || ||| | ||||| | |||||||| |||||||||||||||| ||||| ||||  |||||||||| ||||    
T  50047211 tttgagaaacatattgtattgttttcactcgagtcatggtaattcacttttatcctaaatcatacaactccatatatgttttgagtgtttt 50047301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 179
Target Start/End: Complemental strand, 25266417 - 25266329
Alignment:
Q  92 ttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttt-tagtgagaaa 179  Q
    ||||||| || ||| | ||||| |||||||||||||||||| |  |||||  ||||||||| ||||||||||| |||| ||||||||||    
T  25266417 ttgtattgttttcactcgagtcattgtaattcatttttatcttggatcatggaacttcatatgtgttttgagtgttttgtagtgagaaa 25266329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 269
Target Start/End: Complemental strand, 31319552 - 31319504
Alignment:
Q  221 gatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    |||||||| | ||||||| ||||||||||||||| ||||||||||||||    
T  31319552 gatatgaataatgaagatcaatggttcttagaagttttttgaagacaat 31319504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 214 - 269
Target Start/End: Original strand, 9328334 - 9328388
Alignment:
Q  214 gatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    ||||| ||||||||||||||||  | ||| ||||||||||||||||||||||||||    
T  9328334 gatcagggatatgaagattgaat-tcaatcgttcttagaaggtttttgaagacaat 9328388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 214 - 269
Target Start/End: Complemental strand, 23519716 - 23519662
Alignment:
Q  214 gatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    ||||||| ||||||| ||||||||  |||||||||||||||||| |||||||||||    
T  23519716 gatcaagaatatgaa-attgaagaccaatggttcttagaaggttgttgaagacaat 23519662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 214 - 269
Target Start/End: Original strand, 50047341 - 50047396
Alignment:
Q  214 gatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    |||||||| |||||| ||||||||| |||||| |||| |||||| |||||||||||    
T  50047341 gatcaagggtatgaatattgaagatcaatggtacttaaaaggttattgaagacaat 50047396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 190
Target Start/End: Complemental strand, 8247743 - 8247630
Alignment:
Q  78 gtttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttt-tagtgag 176  Q
    ||||||| || || || |||| || ||| ||||||| ||||||||   ||||| |||| ||||| ||||| |||||||||||||||| |||| |||||||    
T  8247743 gtttgaggaacatattttattattttcacttgagtcattgtaattttgttttaccctagatcatgcaactccataggtgttttgagtgttttgtagtgag 8247644  T
Q  177 aaataatataaatc 190  Q
     ||| || ||||||    
T  8247643 gaatcatgtaaatc 8247630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 207
Target Start/End: Original strand, 1174000 - 1174064
Alignment:
Q  143 caacttcataggtgttttgagtctttttagtgagaaataatataaatcggaaaagcaaaatatct 207  Q
    |||||||||||||| |||||||||||||| | | |||| || ||  |||| ||||||||||||||    
T  1174000 caacttcataggtgctttgagtctttttattaataaatcatgtacttcggcaaagcaaaatatct 1174064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 110 - 269
Target Start/End: Complemental strand, 26499900 - 26499740
Alignment:
Q  110 agtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaataatataaatcggaaaagcaaaatatctta 209  Q
    ||||||||||||||  ||||||||||||||||  || |||||||||||| ||||| ||||||||||||||| ||  ||||||| ||| ||| ||| |       
T  26499900 agtcgttgtaattcgattttatcctaaatcatgtaatttcataggtgttatgagtgtttttagtgagaaatcatgcaaatcggcaaaacaagataccacg 26499801  T
Q  210 tg-aagatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    || |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  26499800 tgaaagatcgaggatatgaagattgaagatcaatggttcttagaaggtttttgaagacaat 26499740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 66 - 269
Target Start/End: Complemental strand, 9943247 - 9943043
Alignment:
Q  66 gagttgtccaacgtttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtc 165  Q
    |||||||||| |||||||| ||||||||||||  || |||||  ||  ||||||||||| |||||||||||||||| ||||| |||||||||||| |||     
T  9943247 gagttgtccatcgtttgaggaatattttgtatagttatcattcaagctgttgtaattcacttttatcctaaatcatgcaactccataggtgtttttagta 9943148  T
Q  166 tttttagtgagaaataatataaatcggaaaagcaaaatatcttatgaa-gatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaag 264  Q
    |||||| |||||||| || |||||||||||| ||| | ||   || || || |||||||||||||| |||| || ||||| ||||| ||||||||| |||    
T  9943147 tttttattgagaaatcatgtaaatcggaaaaacaagacattaaatcaaggaccaaggatatgaagaatgaaaatcaatggctcttataaggtttttaaag 9943048  T
Q  265 acaat 269  Q
    |||||    
T  9943047 acaat 9943043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 107 - 265
Target Start/End: Original strand, 16439516 - 16439675
Alignment:
Q  107 ttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaataatataaatcggaaaagcaaaatatc 206  Q
    |||||||||| ||||| | ||||||||||||| || |||||||| | ||||||||||||||||||||||||||| || |||||| ||||| ||| | |||    
T  16439516 ttgagtcgttataattaacttttatcctaaataatgcaacttcacatgtgttttgagtctttttagtgagaaatcatgtaaatcagaaaaacaagacatc 16439615  T
Q  207 ttatg-aagatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaaga 265  Q
      ||| ||||||| ||||||||||| ||||||| |||||||||||||| | |||||||||    
T  16439616 agatgaaagatcagggatatgaagaatgaagatcaatggttcttagaatggttttgaaga 16439675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 113 - 256
Target Start/End: Complemental strand, 12972435 - 12972291
Alignment:
Q  113 cgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaataatataaatcggaaaagcaaaatatcttatg- 211  Q
    |||||||||||| || ||||||||||||| |||||||||| ||||||||||||||||||| ||||||| || |||||| ||||| ||| | ||    ||     
T  12972435 cgttgtaattcagttgtatcctaaatcatgcaacttcatacgtgttttgagtctttttagggagaaatcatgtaaatcagaaaaccaagacataacgtga 12972336  T
Q  212 aagatcaaggatatgaagattgaagataaatggttcttagaaggt 256  Q
    |||||| | |||||||||||||||||| |||||||||| ||||||    
T  12972335 aagatcgatgatatgaagattgaagatcaatggttctttgaaggt 12972291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 117 - 269
Target Start/End: Complemental strand, 9396652 - 9396500
Alignment:
Q  117 gtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaataatataaatcggaaaagcaaaatatcttatgaa-ga 215  Q
    ||||||||| ||||| ||||||||| |||||||||| ||||||||||||||||||||||||||| || |||||||| ||| ||| | |||   |||| ||    
T  9396652 gtaattcatctttattctaaatcatgcaacttcatatgtgttttgagtctttttagtgagaaatcat-taaatcggcaaaacaagacatcacgtgaagga 9396554  T
Q  216 tcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    ||||||| | ||||| ||||||| || | |||||||||  ||||||||||||||    
T  9396553 tcaaggacaagaagaatgaagatcaacgattcttagaaattttttgaagacaat 9396500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 78 - 232
Target Start/End: Original strand, 24617541 - 24617695
Alignment:
Q  78 gtttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgaga 177  Q
    |||||| |||||||| ||||| || | ||| ||||||| |||||||| ||||||||||||||||  ||||||||  ||||||||||||||||||||||||    
T  24617541 gtttgacaaatatttagtattgtt-taattcgagtcgtcgtaattcagttttatcctaaatcatgtaacttcatgagtgttttgagtctttttagtgaga 24617639  T
Q  178 aataatataaatcggaaaagcaaaatatcttatgaa-gatcaaggatatgaagatt 232  Q
    ||| || |||||| | ||| ||| | ||| | |||| | |||||||||||||||||    
T  24617640 aattatgtaaatcagcaaaacaagacatcatgtgaagggtcaaggatatgaagatt 24617695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 167 - 265
Target Start/End: Complemental strand, 33638501 - 33638402
Alignment:
Q  167 ttttagtgagaaataatataaatcggaaaagcaaaatatcttatgaag-atcaaggatatgaagattgaagataaatggttcttagaaggtttttgaaga 265  Q
    |||||||||||||| || |||||||| ||| ||| |||||   ||||| |||||||||||||||||||||||| ||||||||||| ||||| ||||||||    
T  33638501 ttttagtgagaaatcatgtaaatcggcaaaacaatatatcaagtgaaggatcaaggatatgaagattgaagatcaatggttcttataaggtctttgaaga 33638402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 109 - 161
Target Start/End: Original strand, 16527950 - 16528002
Alignment:
Q  109 gagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttg 161  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  16527950 gagtcgttgtaattcatttttatcctagatcatgcaacttcataggtgttttg 16528002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 103 - 269
Target Start/End: Complemental strand, 14924478 - 14924311
Alignment:
Q  103 tcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaataatataaatcggaaaagcaaaa 202  Q
    ||||| |||||||||||  ||| |||||| ||||||||| ||| |  ||||| |||||||||||||| |||||||||| || |||| | |  || ||| |    
T  14924478 tcattcgagtcgttgtacctcacttttattctaaatcatgcaattatataggggttttgagtcttttaagtgagaaatcatgtaaaccagctaaacaaga 14924379  T
Q  203 tatcttatgaagatcaag-gatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
     |||  ||||||| | || |||||||| ||||||||| |||||||| | ||| |||||||||||||||    
T  14924378 catcaaatgaagaaccagagatatgaaaattgaagatcaatggttcatggaatgtttttgaagacaat 14924311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 105 - 168
Target Start/End: Complemental strand, 20495853 - 20495790
Alignment:
Q  105 atttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtcttt 168  Q
    |||||||||||||||||||| ||||||| ||||| || |||||||||| |||||||||||||||    
T  20495853 atttgagtcgttgtaattcaattttatcttaaattatgcaacttcataagtgttttgagtcttt 20495790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 214 - 269
Target Start/End: Original strand, 30355483 - 30355538
Alignment:
Q  214 gatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    |||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  30355483 gatcgaggatatgaagattgaagatcaatcgttcttagaaggtttttgaagacaat 30355538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 109 - 189
Target Start/End: Complemental strand, 32930527 - 32930447
Alignment:
Q  109 gagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaataatataaat 189  Q
    |||||||| ||||||| ||||||||| || ||| ||| || |||| |||||||||||||||||||||||||| || |||||    
T  32930527 gagtcgttttaattcacttttatccttaaacatgcaatttgatagatgttttgagtctttttagtgagaaatcatgtaaat 32930447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 170
Target Start/End: Complemental strand, 1755636 - 1755555
Alignment:
Q  89 attttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtcttttt 170  Q
    |||||||||| || |||||||| ||||||||||||| || |||||  ||||||  |||| |||| |||||||||||||||||    
T  1755636 attttgtattgttttcatttgattcgttgtaattcacttgtatccctaatcatgtaactacatacgtgttttgagtcttttt 1755555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 196
Target Start/End: Complemental strand, 22559253 - 22559181
Alignment:
Q  123 catttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaataatataaatcggaaaa 196  Q
    ||||||| ||| ||||||| ||||||||||||||||||| ||| |||||||||||||| || ||||||| ||||    
T  22559253 catttttttcccaaatcatgcaacttcataggtgttttgggtc-ttttagtgagaaatcatgtaaatcgaaaaa 22559181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 269
Target Start/End: Complemental strand, 26512852 - 26512672
Alignment:
Q  89 attttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaataatataaa 188  Q
    |||||||||| || ||||| || ||||||||||||| ||||| |||| ||||| ||||   |||| |||||||||||||  ||||||||||| || ||||    
T  26512852 attttgtattgttttcattcgattcgttgtaattcacttttaacctagatcatgcaacccgatagctgttttgagtcttcctagtgagaaatcatgtaaa 26512753  T
Q  189 tcggaaaagcaaaatatcttatgaag-atcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
     ||   || ||| | | | | ||||| |||||||||||||||  ||||||| ||||||||||| ||||| | |||| |||||    
T  26512752 -cgatgaaacaagaaaacatgtgaagaatcaaggatatgaaggatgaagatcaatggttcttaaaaggtctgtgaacacaat 26512672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 269
Target Start/End: Complemental strand, 26517968 - 26517788
Alignment:
Q  89 attttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaataatataaa 188  Q
    |||||||||| || ||||| || ||||||||||||| ||||| |||| ||||| ||||   |||| |||||||||||||  ||||||||||| || ||||    
T  26517968 attttgtattgttttcattcgattcgttgtaattcacttttaacctagatcatgcaacccgatagctgttttgagtcttcctagtgagaaatcatgtaaa 26517869  T
Q  189 tcggaaaagcaaaatatcttatgaag-atcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
     ||   || ||| | | | | ||||| |||||||||||||||  ||||||| ||||||||||| ||||| | |||| |||||    
T  26517868 -cgatgaaacaagaaaacatgtgaagaatcaaggatatgaaggatgaagatcaatggttcttaaaaggtctgtgaacacaat 26517788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 265
Target Start/End: Original strand, 33638259 - 33638303
Alignment:
Q  221 gatatgaagattgaagataaatggttcttagaaggtttttgaaga 265  Q
    |||||||||||||||||| ||||||||||| ||||| ||||||||    
T  33638259 gatatgaagattgaagatcaatggttcttataaggtctttgaaga 33638303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 218 - 269
Target Start/End: Original strand, 24618053 - 24618104
Alignment:
Q  218 aaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    ||||||||||||||||||||| |||| |||||||||| | ||| ||||||||    
T  24618053 aaggatatgaagattgaagatcaatgattcttagaagatctttaaagacaat 24618104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 110 - 161
Target Start/End: Original strand, 30355386 - 30355437
Alignment:
Q  110 agtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttg 161  Q
    ||||||| ||||||| ||||||| |||||||| |||||| ||||||||||||    
T  30355386 agtcgttttaattcacttttatcataaatcatgcaactttataggtgttttg 30355437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 192
Target Start/End: Complemental strand, 14768354 - 14768240
Alignment:
Q  78 gtttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgaga 177  Q
    ||||||| ||| |||||||||  | ||||| ||||  ||||||||||  ||||| ||||| ||| ||| ||||||  ||||||||||||||| ||  |||    
T  14768354 gtttgaggaattttttgtattggtttcattcgagttattgtaattcacatttattctaaaacatgcaatttcataaatgttttgagtcttttcagataga 14768255  T
Q  178 aataatataaatcgg 192  Q
    ||| || ||||||||    
T  14768254 aatcatgtaaatcgg 14768240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 189
Target Start/End: Original strand, 15998540 - 15998652
Alignment:
Q  78 gtttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttt-tagtgag 176  Q
    ||||||| || || ||||||| || ||  |||| |||||| |||| | |||| || || ||||| |||||||||||||||||||||| |||| |||||||    
T  15998540 gtttgaggaaaatattgtattcttttcccttgattcgttgaaattaagttttctcatatatcatgcaacttcataggtgttttgagtgttttgtagtgag 15998639  T
Q  177 aaataatataaat 189  Q
     ||| || |||||    
T  15998640 gaatcatgtaaat 15998652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 65 - 263
Target Start/End: Original strand, 26159772 - 26159971
Alignment:
Q  65 agagttgtccaacgtttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagt 164  Q
    ||||||||| |  |||| ||||| |||||||||| || ||||| |||||||||||||| | |||| |||||||| || |||||||||| |||||||||||    
T  26159772 agagttgtcaatagtttaagaaacattttgtattgttttcattcgagtcgttgtaatttagttttgtcctaaattatccaacttcatatgtgttttgagt 26159871  T
Q  165 ctttttagtgagaaataatataaatcggaaaagcaaaatatcttatgaa-gatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaa 263  Q
    ||||||||||| |||| || || ||| | ||| ||| | ||| | |||| |||  |||||||||||||||||||| ||||||||||| ||||| ||||||    
T  26159872 ctttttagtgaaaaatcatgtagatcagcaaaacaagacatcatgtgaaggattcaggatatgaagattgaagatcaatggttcttataaggtctttgaa 26159971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 119 - 269
Target Start/End: Original strand, 33519100 - 33519251
Alignment:
Q  119 aattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaataatataaatcggaaaagcaaaatatcttatgaag-atc 217  Q
    |||||| ||||||| |||||||| ||||||| |||||||||||||||||||||||||||||| || | |||||| ||| ||||| ||||  ||||| ||     
T  33519100 aattcagttttatcttaaatcatgcaacttcgtaggtgttttgagtctttttagtgagaaatcatgtgaatcggcaaatcaaaacatctcttgaagaatt 33519199  T
Q  218 aaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
     ||||||||| |||||||||| ||| ||||||||||||| ||||||||||||    
T  33519200 gaggatatgacgattgaagatcaatcgttcttagaaggtctttgaagacaat 33519251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 67 - 264
Target Start/End: Original strand, 10576471 - 10576669
Alignment:
Q  67 agttgtccaacgtttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtct 166  Q
    |||||||||  ||||||  || |||||||||| || ||||| ||||| |||||||||| |||||| |||||| || |||||||||||||||||||| |||    
T  10576471 agttgtccatggtttgaagaacattttgtattgttttcattcgagtcattgtaattcacttttattctaaattatacaacttcataggtgttttgattct 10576570  T
Q  167 ttttagtgagaaataatataaatcggaaaagcaaaatatcttatgaa-gatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaag 264  Q
    || ||||||||||| || |||||||||||| ||| | ||| | |||| |||| |||||||||||| | ||||   ||| || |||||||||||||||||    
T  10576571 ttctagtgagaaattatgtaaatcggaaaaacaagacatcatgtgaaggatcgaggatatgaagaataaagaactatgatttttagaaggtttttgaag 10576669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 126 - 269
Target Start/End: Complemental strand, 31859938 - 31859794
Alignment:
Q  126 ttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaataatataaatcggaaaagcaaaatatcttatgaa-gatcaaggata 224  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||||||||||| || |||||| | ||| ||| | | |   |||| |||| ||||||    
T  31859938 ttttatcctaaatcatgcaactgcataggtgttttgagtctttttagtgagaaatcatgtaaatcagcaaaacaagacaccaggtgaaggatcgaggata 31859839  T
Q  225 tgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    |||| ||||||||| ||||||||||||||||| ||||||||||||    
T  31859838 tgaatattgaagatcaatggttcttagaaggtatttgaagacaat 31859794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 92 - 266
Target Start/End: Original strand, 9288253 - 9288428
Alignment:
Q  92 ttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaataatataaatcg 191  Q
    ||||||| || ||||||||||| || ||||||||||||||| ||||||||  | || |||| || |||| ||||||||||||||||||| || |||||||    
T  9288253 ttgtattgttttcatttgagtcattataattcatttttatcataaatcatgtacctccatatgtttttttagtctttttagtgagaaatcatgtaaatcg 9288352  T
Q  192 gaaaagcaaaatatcttatgaa-gatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagac 266  Q
    | ||| ||| | |||   |||| ||||||||||||||||||||||||  |||||||||||| ||||| || |||||    
T  9288353 gcaaaacaagacatcaagtgaaggatcaaggatatgaagattgaagaccaatggttcttagcaggttgttaaagac 9288428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 117 - 254
Target Start/End: Original strand, 29437539 - 29437677
Alignment:
Q  117 gtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaataatataaatcggaaaagcaaaatatcttatgaa-ga 215  Q
    |||||||| |||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| || |||||||| ||  ||| | |||   |||| ||    
T  29437539 gtaattcagttttatcctaaatcatgcaacttcatagctgttttgagtctttttaatgagaaatcatgtaaatcggcaagacaagacatcacgtgaagga 29437638  T
Q  216 tcaaggatatgaagattgaagataaatggttcttagaag 254  Q
    || |||||||||||||||||| | |||||||||||||||    
T  29437639 tcgaggatatgaagattgaagttcaatggttcttagaag 29437677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 80 - 270
Target Start/End: Complemental strand, 17339897 - 17339706
Alignment:
Q  80 ttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaa 179  Q
    ||||| || ||||||||| ||| |||||  |||| |||||||||| |||||||||||||||| ||| ||||||||||||||||  ||||||||||||| |    
T  17339897 ttgaggaacattttgtatctttttcattctagtctttgtaattcaattttatcctaaatcatgcaatttcataggtgttttgaagctttttagtgagaga 17339798  T
Q  180 taatataaatcggaaaagcaaaatatcttatgaa-gatcaag-gatatgaagattgaagataaatggttcttagaaggtttttgaagacaatt 270  Q
    |  | | |||||  ||||||| |||||  ||||| ||||||| |||||| ||| ||||||| | || |||||| ||| |||||||||||||||    
T  17339797 tcgtgt-aatcgacaaagcaagatatcacatgaaggatcaagagatatggagaatgaagatcagtgattcttaaaagatttttgaagacaatt 17339706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 89 - 196
Target Start/End: Original strand, 21167769 - 21167876
Alignment:
Q  89 attttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaataatataaa 188  Q
    |||||||||| || ||||| |||| ||||||||| | ||||||||||||  ||  |||||||||||||||||||| |||||||||||||||| || ||||    
T  21167769 attttgtattgttttcattcgagttgttgtaatttacttttatcctaaaatatgtaacttcataggtgttttgagactttttagtgagaaatcatgtaaa 21167868  T
Q  189 tcggaaaa 196  Q
    ||||||||    
T  21167869 tcggaaaa 21167876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 114 - 270
Target Start/End: Original strand, 15192268 - 15192425
Alignment:
Q  114 gttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttt-tagtgagaaataatataaatcggaaaagcaaaatatcttatga 212  Q
    ||||||||||| |||||||||| ||| | || || |||||||||||||||| |||| ||||||||||| || |||||||  ||| ||| | |||   |||    
T  15192268 gttgtaattcacttttatcctagatcgtgcagctccataggtgttttgagtgttttgtagtgagaaatcatgtaaatcgacaaaccaagacatcacgtga 15192367  T
Q  213 ag-atcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaatt 270  Q
    || |||||||||||||| ||||||||  |||||||||||||||||| ||||||||||||    
T  15192368 aggatcaaggatatgaa-attgaagaccaatggttcttagaaggttgttgaagacaatt 15192425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 90 - 269
Target Start/End: Original strand, 23353664 - 23353839
Alignment:
Q  90 ttttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaataatataaat 189  Q
    ||||||||| || ||||| |||||||||||||||| ||||||  |||||| | ||  |||||  ||||||||||||||||||||||||||| || |||||    
T  23353664 ttttgtattgttttcattcgagtcgttgtaattcaattttata-taaatcgtgcacattcatgagtgttttgagtctttttagtgagaaatcatgtaaat 23353762  T
Q  190 cggaaaagcaaaatatcttatgaagatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    ||| ||| ||| | |||  ||||||  |||||||||||||||| ||||| ||| |   ||||||||| ||| ||||||||    
T  23353763 cggcaaaacaagacatcacatgaaggacaaggatatgaagattaaagatcaatag---ttagaaggtcttttaagacaat 23353839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 79 - 269
Target Start/End: Complemental strand, 25315316 - 25315125
Alignment:
Q  79 tttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagt-ctttttagtgaga 177  Q
    |||||| || || ||||||| || ||| |||||||||||||||| | |||||||||| ||||| ||||| |||| | |||||||||  ||| |||||||     
T  25315316 tttgaggaacatattgtattgttttcacttgagtcgttgtaattaagttttatcctagatcatgcaactccatatgggttttgagtaatttgtagtgagg 25315217  T
Q  178 aataatataaatcggaaaagcaaaatatcttatgaa-gatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    ||| || |||||||  ||| ||| | |||  ||||| ||||||||||||||| ||| ||||||||||||||||| || ||| |||||||||||    
T  25315216 aatcatgtaaatcgacaaatcaagacatcgcatgaaggatcaaggatatgaa-attaaagataaatggttcttaaaatgttgttgaagacaat 25315125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 118 - 269
Target Start/End: Original strand, 5676268 - 5676421
Alignment:
Q  118 taattcatttttatcctaaatcattcaacttcataggtgttttgagtcttttt-agtgagaaataatataaatcggaaaagcaaaatatcttatgaag-a 215  Q
    |||||||||||||||||||||  | ||||| |||||||||||||||| ||||| |||||  ||| || ||||| |  ||| ||| | |||  |||||| |    
T  5676268 taattcatttttatcctaaattgtgcaactccataggtgttttgagtattttttagtgatgaatcatgtaaattgataaatcaagacatcacatgaagga 5676367  T
Q  216 tcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    |||||||||| ||| ||||| | ||||| |||||||||||||||||||||||||    
T  5676368 tcaaggatattaagtttgaatacaaatgattcttagaaggtttttgaagacaat 5676421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 78 - 263
Target Start/End: Complemental strand, 47024842 - 47024665
Alignment:
Q  78 gtttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgaga 177  Q
    |||||| |||||| ||||||| || ||| | ||| |||| ||||||| |||||||||| ||||| ||||||||  |||||||||        ||||||||    
T  47024842 gtttgaaaaatatattgtattgttttcactcgagccgttctaattcacttttatcctagatcatgcaacttcaatggtgttttg--------tagtgaga 47024751  T
Q  178 aataatataaatcggaaaagcaaaatatcttatgaag-atcaaggatatgaagattgaagataaatggttcttagaaggtttttgaa 263  Q
    ||| || ||||||| |||| ||| | |||  |||||| |||||||| ||||||||||||| | ||||||||||||||||||||||||    
T  47024750 aatcatgtaaatcgaaaaatcaagacatcgcatgaaggatcaaggacatgaagattgaag-tcaatggttcttagaaggtttttgaa 47024665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 134 - 270
Target Start/End: Original strand, 13064511 - 13064648
Alignment:
Q  134 taaatcattcaacttcataggtgttttgagtctttttagtgagaaataatataaatcggaaaagcaaaatatcttatgaag-atcaaggatatgaagatt 232  Q
    |||||||| ||| || |||||||||||||||| ||||||| |||||| || ||||| || ||| ||| | |||   ||||| |||||||||| || ||||    
T  13064511 taaatcatgcaattttataggtgttttgagtcattttagtaagaaatcatgtaaattggcaaatcaagacatcacgtgaaggatcaaggataagacgatt 13064610  T
Q  233 gaagataaatggttcttagaaggtttttgaagacaatt 270  Q
    |||| | ||||||||||||| ||| |||||||||||||    
T  13064611 gaagttcaatggttcttagagggtatttgaagacaatt 13064648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 126 - 269
Target Start/End: Original strand, 17187252 - 17187394
Alignment:
Q  126 ttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaataatataaatcggaaaagcaaaatatcttatgaa-gatcaaggata 224  Q
    |||||||||||||||| ||||||||||||||  ||||||||||||||||| |||| || |||||||  |||  || | |||   |||| |||  ||||||    
T  17187252 ttttatcctaaatcatgcaacttcataggtg--ttgagtctttttagtgataaatcatgtaaatcgacaaaataacacatcaagtgaatgattgaggata 17187349  T
Q  225 tgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    |||||||||||| | | ||||||||||||| | ||||||||||||    
T  17187350 tgaagattgaagttcagtggttcttagaagttatttgaagacaat 17187394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 114 - 269
Target Start/End: Original strand, 19601863 - 19602019
Alignment:
Q  114 gttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttt-tagtgagaaataatataaatcggaaaagcaaaatatcttatg- 211  Q
    ||||||||||| |||||||||||||||| ||||| ||||||| |||| ||  |||| ||||||||||| || ||||||   ||| ||| | |||   ||     
T  19601863 gttgtaattcacttttatcctaaatcatgcaactccataggtatttttagcgttttctagtgagaaatcatgtaaatcaacaaatcaagacatcacgtga 19601962  T
Q  212 aagatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    |||||| ||||||||| |||||||||  ||||||||||| ||||||||||||||||||    
T  19601963 aagatcgaggatatgatgattgaaga-caatggttcttaaaaggtttttgaagacaat 19602019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 78 - 269
Target Start/End: Complemental strand, 13275830 - 13275635
Alignment:
Q  78 gtttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgaga 177  Q
    |||||||||| || ||||||| || ||||| |||||||| ||||||| ||| |||| ||||||| |||||   ||||||||||||||||||||| ||  |    
T  13275830 gtttgagaaacatgttgtattgttttcattcgagtcgttataattcactttcatcccaaatcatacaactctgtaggtgttttgagtctttttattgcta 13275731  T
Q  178 aataatataaatcggaaaagcaaaatatcttatgaa-gatcaa-ggatatgaagat--tgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    ||| || ||| |||| ||||||| | | |  | ||| ||| || ||||||||| ||  ||||||| |||||||||| |||| ||||||||||||||    
T  13275730 aatcatgtaattcggcaaagcaatacaccacacgaaggattaagggatatgaatataatgaagatcaatggttctttgaagttttttgaagacaat 13275635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 65 - 153
Target Start/End: Original strand, 24925821 - 24925909
Alignment:
Q  65 agagttgtccaacgtttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcatag 153  Q
    ||||||||| | |||||||| || |||||||||| || |||||||||||| ||||||||| ||||||| ||||||||  ||||||||||    
T  24925821 agagttgtcaatcgtttgagtaacattttgtattgttttcatttgagtcgctgtaattcacttttatcataaatcatgtaacttcatag 24925909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 86 - 265
Target Start/End: Original strand, 46647233 - 46647412
Alignment:
Q  86 aatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgag-tctttttagtgagaaataata 184  Q
    ||||||||||||| || |||||  ||||| ||||||||| |||||||||||||||| ||||| |||| |||  ||||| | ||||||  ||||||| |||    
T  46647233 aatattttgtattgttttcattctagtcggtgtaattcacttttatcctaaatcatgcaactccataagtg--ttgagttatttttatcgagaaatcata 46647330  T
Q  185 taaatcggaaaagcaaaatatcttatga-agatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaaga 265  Q
    |||||| | ||| ||| | |||   |||  |||||| |||||||| | ||||||| ||||||||||| ||||||||| ||||    
T  46647331 taaatcagcaaaacaagacatcacgtgagggatcaaagatatgaaaaatgaagatcaatggttcttaaaaggtttttaaaga 46647412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 115 - 269
Target Start/End: Complemental strand, 34864342 - 34864189
Alignment:
Q  115 ttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttt-tagtgagaaataatataaatcggaaaagcaaaatatcttatgaa 213  Q
    |||||||||| ||||||||||||| ||  |||| |||  ||||||||||| |||| ||||||||||| || |||||||  ||| ||| | |||   ||||    
T  34864342 ttgtaattcacttttatcctaaattatgaaactccat--gtgttttgagtgttttgtagtgagaaatcatgtaaatcgacaaatcaagacatcacgtgaa 34864245  T
Q  214 g-atcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    | ||||| |||||| ||||||||| | |||||||||||||||||||||| |||||||    
T  34864244 ggatcaaagatatggagattgaag-tcaatggttcttagaaggtttttgtagacaat 34864189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 180
Target Start/End: Original strand, 22119706 - 22119777
Alignment:
Q  109 gagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaat 180  Q
    ||||| |||||||| | ||||| || ||||||| ||||| ||||||| ||||||||||||||||||||||||    
T  22119706 gagtcattgtaatttacttttacccaaaatcatgcaactacataggtattttgagtctttttagtgagaaat 22119777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 267
Target Start/End: Original strand, 27302807 - 27302996
Alignment:
Q  78 gtttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttt-tagtgag 176  Q
    ||||||| || |||||||||| || ||| | ||||| |||||||||| || ||| ||| ||||| ||||||||| |||||||| ||| |||| ||||||     
T  27302807 gtttgaggaacattttgtattgttttcactcgagtcattgtaattcaattatatactagatcatgcaacttcat-ggtgtttttagtattttgtagtgat 27302905  T
Q  177 aaataatataaatcggaaaagcaaaatatcttatg-aagatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagaca 267  Q
     ||| || |||||||  |||  || | |||   || ||||||||||||||||| |||||| || || |||||||||||||||||||||||||    
T  27302906 gaatcatgtaaatcgacaaattaagacatcacgtgcaagatcaaggatatgaa-attgaacattaagggttcttagaaggtttttgaagaca 27302996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 109 - 269
Target Start/End: Complemental strand, 17026751 - 17026590
Alignment:
Q  109 gagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttt-tagtgagaaataatataaatcggaaaagcaaaatatct 207  Q
    |||| ||||||||||| |||||||||| ||||| ||||| |||||||||||||||| |||| |||| | |||| || |||||||  |||  || | |||     
T  17026751 gagttgttgtaattcacttttatcctagatcatgcaactccataggtgttttgagtgttttgtagtcataaatcatgtaaatcgacaaattaagacatca 17026652  T
Q  208 tatgaa-gatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
     ||||| ||||||| ||||||  ||| ||| | ||||||||||| || |||||||||||||||    
T  17026651 catgaaggatcaagtatatgagaatttaag-ttaatggttcttaaaaagtttttgaagacaat 17026590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 82 - 180
Target Start/End: Complemental strand, 10320301 - 10320202
Alignment:
Q  82 gagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgag-tctttttagtgagaaat 180  Q
    |||||| || ||||||| || ||| | |||||||||||||||| |||||||||| | ||| ||||| |||||||||||| || | ||| |||||||||||    
T  10320301 gagaaacatattgtattcttttcactcgagtcgttgtaattcacttttatcctagaccatgcaactccataggtgttttaagctttttgtagtgagaaat 10320202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 78 - 189
Target Start/End: Original strand, 21077262 - 21077373
Alignment:
Q  78 gtttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgaga 177  Q
    ||||||||||  ||||||||| || | ||| ||||||||||| |||| |||||||  |||||||  || | ||||||||||||  ||||||||||||| |    
T  21077262 gtttgagaaaccttttgtattatttttattcgagtcgttgtagttcaattttatcacaaatcatcaaattccataggtgtttttggtctttttagtgaaa 21077361  T
Q  178 aataatataaat 189  Q
    ||| || |||||    
T  21077362 aatcatgtaaat 21077373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 218 - 269
Target Start/End: Original strand, 22119791 - 22119842
Alignment:
Q  218 aaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    ||||||||||| ||||||||| ||||||||||||| ||||||||| ||||||    
T  22119791 aaggatatgaatattgaagatcaatggttcttagagggtttttgaggacaat 22119842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 192
Target Start/End: Complemental strand, 13206697 - 13206647
Alignment:
Q  142 tcaacttcataggtgttttgagtctttttagtgagaaataatataaatcgg 192  Q
    |||| ||||||||||||||||||| |||||||||||||| || ||||||||    
T  13206697 tcaatttcataggtgttttgagtcattttagtgagaaatcatgtaaatcgg 13206647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 89 - 190
Target Start/End: Original strand, 4732790 - 4732891
Alignment:
Q  89 attttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaataatataaa 188  Q
    ||||| |||| || |||||||||||||||||||| |  ||||||||||| ||| |||||||| | |  |||| ||||||||||  ||||||| || ||||    
T  4732790 attttatattgttttcatttgagtcgttgtaatttaaatttatcctaaaccatacaacttcacaagcttttttagtctttttaacgagaaatcatgtaaa 4732889  T
Q  189 tc 190  Q
    ||    
T  4732890 tc 4732891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 222 - 265
Target Start/End: Complemental strand, 5906703 - 5906660
Alignment:
Q  222 atatgaagattgaagataaatggttcttagaaggtttttgaaga 265  Q
    |||| |||||| ||||| ||||||||||||||||||||||||||    
T  5906703 atattaagatttaagattaatggttcttagaaggtttttgaaga 5906660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 214 - 265
Target Start/End: Complemental strand, 7024167 - 7024116
Alignment:
Q  214 gatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaaga 265  Q
    |||||| |||||||||||||||||  ||||||||||||||| || |||||||    
T  7024167 gatcaaagatatgaagattgaagaccaatggttcttagaagattcttgaaga 7024116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 89 - 180
Target Start/End: Original strand, 20044218 - 20044309
Alignment:
Q  89 attttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaat 180  Q
    ||||| |||| || ||||| ||||| |||||||||| |||  |||| |||||| ||||| |||| || ||||||||||||||| ||| ||||    
T  20044218 attttatattgttttcattcgagtcattgtaattcaatttcttccttaatcatgcaactccatatgtattttgagtctttttattgaaaaat 20044309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 192
Target Start/End: Complemental strand, 12243740 - 12243698
Alignment:
Q  150 ataggtgttttgagtctttttagtgagaaataatataaatcgg 192  Q
    |||||||||||||||| |||||||||||||| || ||||||||    
T  12243740 ataggtgttttgagtcattttagtgagaaatcatgtaaatcgg 12243698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 169
Target Start/End: Original strand, 18444304 - 18444370
Alignment:
Q  103 tcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttt 169  Q
    ||||| ||| || ||||||||| |||||||||||||||  ||||| ||||||| |||| ||||||||    
T  18444304 tcattcgagccgctgtaattcagttttatcctaaatcacgcaactccataggtattttaagtctttt 18444370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 180
Target Start/End: Original strand, 30624953 - 30624997
Alignment:
Q  136 aatcattcaacttcataggtgttttgagtctttttagtgagaaat 180  Q
    |||||| ||| ||||||||||||||||||||||||| ||| ||||    
T  30624953 aatcatgcaatttcataggtgttttgagtctttttattgaaaaat 30624997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 78 - 265
Target Start/End: Original strand, 17152182 - 17152371
Alignment:
Q  78 gtttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtcttttt-agtgag 176  Q
    ||||||| ||||||||||||| || ||||| |||||||||||||| | ||||||| ||| |||| |||||   || ||||||||||| ||||| ||| ||    
T  17152182 gtttgaggaatattttgtattattttcattcgagtcgttgtaattaacttttatcgtaattcatgcaactctgtaagtgttttgagttttttttagtaag 17152281  T
Q  177 aaataatataaatcggaaaagcaaaatatcttatgaag-atcaaggatatgaagattgaagataaatggttcttagaaggtttttgaaga 265  Q
    |||| || |||||||| ||| ||| | ||| | ||||| |||||||||||||||| |||| || ||||||||||||||||||||||||||    
T  17152282 aaatcatgtaaatcggcaaaacaagacatcgtgtgaaggatcaaggatatgaagaatgaatatgaatggttcttagaaggtttttgaaga 17152371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 78 - 269
Target Start/End: Complemental strand, 21849158 - 21848967
Alignment:
Q  78 gtttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgaga 177  Q
    ||||||| || |||||||||| || || |||||||| |||||||||| ||||||| |||||||| ||||| ||||||  |||||||||||||||||||||    
T  21849158 gtttgaggaacattttgtattgttttc-tttgagtcattgtaattcagttttatcataaatcatgcaactccataggatttttgagtctttttagtgaga 21849060  T
Q  178 aataatataaatcggaaaagcaaaatatcttatgaa-gatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    |||||| |||||||||| | ||| | |||  ||||| |||||||||||  || | |||| || ||||||||||| |||||||| ||| |||||    
T  21849059 aataatgtaaatcggaagaacaagacatcacatgaaggatcaaggataataataatgaaaatcaatggttcttaaaaggttttggaacacaat 21848967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 113 - 269
Target Start/End: Original strand, 31262063 - 31262218
Alignment:
Q  113 cgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaataatataaatcggaaaagcaaaatatcttatga 212  Q
    |||||||||||| |||||||| ||| ||| |||||||| ||||||||| ||||||||||||||||| | || ||||| || ||| ||| | | |  ||||    
T  31262063 cgttgtaattcagttttatcc-aaaccatgcaacttcacaggtgttttaagtctttttagtgagaattcatctaaattggcaaaacaagacaccacatga 31262161  T
Q  213 agatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    ||||| |||||||||||||||||||| |||||||||||| |||| ||||||||||||    
T  31262162 agatcgaggatatgaagattgaagattaatggttcttagtaggtctttgaagacaat 31262218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 90 - 256
Target Start/End: Original strand, 19541078 - 19541245
Alignment:
Q  90 ttttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaataatataaat 189  Q
    |||||||||| | ||| | ||||| |||||||||| |||||||||||||||| ||||| |||||||||||||||||||| ||||||||||| || |||||    
T  19541078 ttttgtatttatttcaatcgagtcattgtaattcagttttatcctaaatcatgcaactccataggtgttttgagtctttctagtgagaaatcatgtaaat 19541177  T
Q  190 cggaaaagcaaaatatcttatgaa-gatcaaggatatgaagattgaagataaatggttcttagaaggt 256  Q
    ||| |||  || | |||   |||| |||| |||||||||||||||||||  ||||||||||| |||||    
T  19541178 cggcaaaataagacatcaagtgaaggatcgaggatatgaagattgaagaccaatggttcttataaggt 19541245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 78 - 269
Target Start/End: Complemental strand, 18236388 - 18236196
Alignment:
Q  78 gtttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgaga 177  Q
    |||||||||| | ||| |||| || ||||| |||| ||| ||||||| ||||||| |||||||| ||||| |||| || |||||||||||||||||||||    
T  18236388 gtttgagaaacaatttatattgttttcattcgagttgttataattcacttttatcttaaatcatgcaactccataagtattttgagtctttttagtgaga 18236289  T
Q  178 aataatataaatcggaaaagcaaaatatcttatgaa-gatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    ||| || ||| |||| ||| ||| | |||  ||||| |||||   |||||||||||||||   |||||||||||||||||| |||||||||||    
T  18236288 aatcatgtaactcggcaaaacaagacatcacatgaaggatcacaaatatgaagattgaaggccaatggttcttagaaggttgttgaagacaat 18236196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 89 - 269
Target Start/End: Original strand, 24047422 - 24047604
Alignment:
Q  89 attttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaataatataaa 188  Q
    |||||||||| || ||||| ||||| |||||||||| ||||||||||||| || ||||| ||||||  ||||| ||| ||||||||||||||  || |||    
T  24047422 attttgtattgttttcattcgagtcattgtaattcacttttatcctaaattatgcaactccataggcattttgggtcattttagtgagaaatcctacaaa 24047521  T
Q  189 tcggaaaagcaaaatatcttatgaa-gatcaaggatatgaagattgaagataaatggttct-tagaaggtttttgaagacaat 269  Q
    |||| ||| ||| | |||  ||||| ||||||||||||||||| ||||||| |||||||||  | ||||||| ||||||||||    
T  24047522 tcggcaaaacaagacatcccatgaaggatcaaggatatgaagaatgaagatcaatggttctcaaaaaggtttgtgaagacaat 24047604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 78 - 269
Target Start/End: Original strand, 30998800 - 30998992
Alignment:
Q  78 gtttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttt-tagtgag 176  Q
    ||||||| || || ||||||| || ||| ||||||||||||| |||| |||||||||| ||||| ||||| |||||||||||||||| |||| ||||||     
T  30998800 gtttgaggaacatattgtattgttttcacttgagtcgttgtacttcagttttatcctagatcatacaactccataggtgttttgagtgttttgtagtgaa 30998899  T
Q  177 aaataatataaatcggaaaagcaaaatatcttatgaa-gatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
     | | || |||||||  ||| ||| |||||   |||| ||||||||||||| | ||||||||| || ||||||||||||||| |||||||||||    
T  30998900 gagtgatgtaaatcgacaaatcaagatatcaagtgaaggatcaaggatatgta-attgaagatcaagggttcttagaaggttgttgaagacaat 30998992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 110 - 269
Target Start/End: Original strand, 39730508 - 39730668
Alignment:
Q  110 agtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaataatataaatcggaaaagcaaaatatctta 209  Q
    ||||||||||||||| |||||||||||||||| |||||    ||||||||||||| ||||||||||||||| ||||||||| | ||| ||| | |||  |    
T  39730508 agtcgttgtaattcacttttatcctaaatcatgcaactctgcaggtgttttgagtatttttagtgagaaatcatataaatcagcaaaacaagacatcaca 39730607  T
Q  210 tgaa-gatcaa-ggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    |||| |||||| ||||||||||| ||||||  |||  ||||||||||  |||||||||||||    
T  39730608 tgaaggatcaagggatatgaaga-tgaagactaatatttcttagaagaattttgaagacaat 39730668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 92 - 269
Target Start/End: Complemental strand, 21505211 - 21505032
Alignment:
Q  92 ttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttt-tagtgagaaataatataaatc 190  Q
    ||||||| || ||| | ||||| || ||||| | |||||||||||||||| ||||||| ||| |||||||||| |||| ||||||| ||| || ||||||    
T  21505211 ttgtattgttttcactcgagtctttataatttacttttatcctaaatcatgcaacttcttagatgttttgagtgttttgtagtgaggaatcatgtaaatc 21505112  T
Q  191 ggaaaagcaaaatatcttatgaa-gatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    |  |||  || | |||  ||||| |||||||||| ||||| |||||||  ||||||||| ||||||||||||||||||||    
T  21505111 gataaattaagacatcacatgaaagatcaaggatgtgaagtttgaagaccaatggttctgagaaggtttttgaagacaat 21505032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 89 - 268
Target Start/End: Complemental strand, 15454605 - 15454433
Alignment:
Q  89 attttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaataatataaa 188  Q
    |||||||||| || || |||||||||||||| ||||||||||||||||||||| ||       ||||||||||||| |||||||||||||||  | ||||    
T  15454605 attttgtattgttttcttttgagtcgttgta-ttcatttttatcctaaatcatgca-------aggtgttttgagtttttttagtgagaaatcgtgtaaa 15454514  T
Q  189 tcggaaaagcaaaatatcttatgaa-gatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaa 268  Q
    |  | ||| ||| | |||  ||||| ||||||||||||||||| | ||||||||||||||||| ||| ||| | |||||||    
T  15454513 ttagcaaaacaagacatcacatgaaggatcaaggatatgaagaataaagataaatggttcttaaaagttttctaaagacaa 15454433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 126 - 269
Target Start/End: Complemental strand, 27417301 - 27417156
Alignment:
Q  126 ttttatcctaaatcattcaacttcataggtgttttgagtctttt-tagtgagaaataatataaatcggaaaagcaaaatatcttatgaag-atcaaggat 223  Q
    |||||||||||||||| ||||| |||||||||||| ||| |||| ||||||||||| || |||||||  ||| ||| | |||  |||||| ||||| |||    
T  27417301 ttttatcctaaatcatgcaactccataggtgttttaagtgttttgtagtgagaaatcatgtaaatcgacaaatcaagacatcacatgaaggatcaatgat 27417202  T
Q  224 atgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    |||||  |||||||  ||||||||| |||||||||||||| |||||    
T  27417201 atgaatgttgaagaccaatggttctaagaaggtttttgaaaacaat 27417156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 158 - 269
Target Start/End: Complemental strand, 14922044 - 14921932
Alignment:
Q  158 tttgagtctttttagtgagaaataatataaatcggaaaagcaaaatatcttatgaaga-tcaaggatatgaagattgaagataaatggttcttagaaggt 256  Q
    ||||||||||||| ||||||||| || |||||||||||| ||| | ||| | |||||| || |||||||||||||||||| | |||||||||||||||||    
T  14922044 tttgagtctttttcgtgagaaatcatgtaaatcggaaaaacaatacatcatgtgaagaatcgaggatatgaagattgaagttcaatggttcttagaaggt 14921945  T
Q  257 ttttgaagacaat 269  Q
     | || |||||||    
T  14921944 atatgtagacaat 14921932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 126 - 268
Target Start/End: Complemental strand, 17415201 - 17415058
Alignment:
Q  126 ttttatcctaaatcattcaact-tcataggtgttttgagtctttttagtgagaaataatataaatcggaaaagcaaaatatcttatgaa-gatcaaggat 223  Q
    ||||||| ||||| || ||||| |||||||||||||||||||||||||||||||||  | |||||||| ||| ||| | |||   |||| |||| ||||     
T  17415201 ttttatcgtaaataatgcaactctcataggtgttttgagtctttttagtgagaaatcgtgtaaatcggcaaaacaagacatcacgtgaaggatcgaggac 17415102  T
Q  224 atgaagattgaagataaatggttcttagaaggtttttgaagacaa 268  Q
    |||||||||||| || |||||||||||| || | |||||||||||    
T  17415101 atgaagattgaa-atcaatggttcttaggagttatttgaagacaa 17415058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 94 - 162
Target Start/End: Complemental strand, 27918053 - 27917985
Alignment:
Q  94 gtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttga 162  Q
    ||||| || |||||||||||||||||||||| |||||| ||||||||| ||||| ||||||||||||||    
T  27918053 gtattgttttcatttgagtcgttgtaattcacttttatactaaatcatgcaactccataggtgttttga 27917985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 89 - 267
Target Start/End: Original strand, 18117023 - 18117201
Alignment:
Q  89 attttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaataatataaa 188  Q
    |||||||||| || ||||||||||| |||||||||| ||| |||| |||| || |||||   | |||||||||| ||||||||   | |||| || ||||    
T  18117023 attttgtattgttttcatttgagtcattgtaattcactttaatcc-aaataatgcaactaggttggtgttttgaatctttttaacaaaaaatcatgtaaa 18117121  T
Q  189 tcggaaaagcaaaatatcttatgaag-atcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagaca 267  Q
    |||| ||| ||| |||||   ||||| ||| |||||||||| | ||||||||||||||||||||||  ||||| ||||||    
T  18117122 tcggcaaaacaagatatcgcgtgaagcatcgaggatatgaaaaatgaagataaatggttcttagaatattttttaagaca 18117201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 89 - 269
Target Start/End: Original strand, 18818737 - 18818923
Alignment:
Q  89 attttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaataatataaa 188  Q
    ||||| |||| || ||||||||||||||| |||| | ||||||| |||||||| ||| | |||||  ||||| |||||||||| |||||||| || ||||    
T  18818737 attttatattgttttcatttgagtcgttgaaatttagttttatcataaatcatgcaagtccatagacgttttcagtctttttattgagaaatcatgtaaa 18818836  T
Q  189 tcggaaaagcaaaatatcttatgaa-gatca-----aggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    |||| ||| |||   |||   |||| ||| |     |||||||||| | ||||||| ||||||||||||||||| ||||||||||||    
T  18818837 tcggcaaaacaaggcatcacgtgaaggattaaggataggatatgaaaactgaagattaatggttcttagaaggtctttgaagacaat 18818923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 90 - 189
Target Start/End: Complemental strand, 17240928 - 17240831
Alignment:
Q  90 ttttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaataatataaat 189  Q
    |||| |||| || ||||| ||||||| |||||| | |||||| ||||||||| ||||||||||||||  |||||| |||||||||| |||| ||||||||    
T  17240928 ttttctattgttttcattcgagtcgtcgtaatttagttttattctaaatcatgcaacttcataggtg--ttgagtgtttttagtgaaaaatcatataaat 17240831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 269
Target Start/End: Original strand, 35707832 - 35708024
Alignment:
Q  78 gtttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttt-tagtgag 176  Q
    |||||||||| || ||||||| || ||| |||| | ||||||||||| |||||||||| ||    | |||||||||||||||||||| |||| |||||||    
T  35707832 gtttgagaaacatgttgtattgttttcacttgatttgttgtaattcagttttatcctagattgcacgacttcataggtgttttgagtgttttgtagtgag 35707931  T
Q  177 aaataatataaatcggaaaagcaaaatatcttatgaag-atcaaggatatgaag-attgaagataaatggttcttagaaggtttttgaagacaat 269  Q
     ||| || ||||||  |||| ||| | ||| | ||||| |||||||  |||||| |||||| || || | ||||||||||||| |||||||||||    
T  35707932 gaatcatgtaaatcataaaatcaagacatcatgtgaagtatcaagg--atgaagaattgaatatcaaggtttcttagaaggttgttgaagacaat 35708024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 90 - 269
Target Start/End: Original strand, 24188007 - 24188190
Alignment:
Q  90 ttttgtatttttctcatttgagtcgttgtaattcatttttatcctaaa---tcattcaacttcataggtgttttgagtctttt-tagtgagaaataatat 185  Q
    ||||||||| |  ||||| ||||| |||| ||||| ||||||||||||   |||||||||| || | ||||||||||| |||| ||||||||||| || |    
T  24188007 ttttgtattgtattcattcgagtcattgtgattcacttttatcctaaatattcattcaactccaaatgtgttttgagtattttgtagtgagaaatcatgt 24188106  T
Q  186 aaatcggaaaagcaaaatatcttatgaa-gatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    ||||||   || |||   |||  ||||| ||||||| ||||||||||||||||  ||| | |||||||| |||||||||||||||    
T  24188107 aaatcgaccaatcaaggcatcacatgaaggatcaagaatatgaagattgaaga-caatagatcttagaaagtttttgaagacaat 24188190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 90 - 170
Target Start/End: Complemental strand, 34063919 - 34063839
Alignment:
Q  90 ttttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtcttttt 170  Q
    ||||||||| || ||||| |||| ||||||||||| | |||||||||||||| ||||| || | ||||||||||| |||||    
T  34063919 ttttgtattgttttcattcgagttgttgtaattcactattatcctaaatcatgcaactccacaagtgttttgagttttttt 34063839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 107 - 158
Target Start/End: Original strand, 30705260 - 30705311
Alignment:
Q  107 ttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgtt 158  Q
    |||| ||||||||||| | |||||||||||||||| ||||||||||||||||    
T  30705260 ttgactcgttgtaatttacttttatcctaaatcatgcaacttcataggtgtt 30705311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 189
Target Start/End: Complemental strand, 22388827 - 22388732
Alignment:
Q  90 ttttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaataatataaat 189  Q
    |||| |||| || ||||||||||| ||||||| || ||||||||| |||||| |||||||||     ||||||||||||| |||||||||| || |||||    
T  22388827 ttttttattgttttcatttgagtcattgtaatccagttttatcctgaatcatgcaacttcatt----ttttgagtcttttcagtgagaaatcatgtaaat 22388732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 269
Target Start/End: Original strand, 31274131 - 31274177
Alignment:
Q  223 tatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    |||||| ||||||||| ||||||||||||||||| ||||||||||||    
T  31274131 tatgaaaattgaagattaatggttcttagaaggtctttgaagacaat 31274177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 180
Target Start/End: Original strand, 31449994 - 31450088
Alignment:
Q  86 aatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaat 180  Q
    |||||||||||||||| ||||| ||||| || ||| ||| |||  |||| ||| || |||||| ||||||||||||||| |||||| ||| ||||    
T  31449994 aatattttgtatttttttcattagagtcattataaatcagtttattccttaattatgcaactttataggtgttttgagtatttttattgataaat 31450088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 92 - 161
Target Start/End: Original strand, 1733143 - 1733212
Alignment:
Q  92 ttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttg 161  Q
    ||||||| || |||||||||||||||||||||| |||||||||| | |||  ||||  ||||||||||||    
T  1733143 ttgtattgttttcatttgagtcgttgtaattcagttttatcctagagcatgaaactatataggtgttttg 1733212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 109 - 174
Target Start/End: Complemental strand, 32276568 - 32276503
Alignment:
Q  109 gagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtg 174  Q
    ||||| |||||||| |  ||||| ||||||||||||||| ||| ||||||||||||| ||||||||    
T  32276568 gagtcattgtaattgaagtttattctaaatcattcaactccatgggtgttttgagtccttttagtg 32276503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 160
Target Start/End: Complemental strand, 21843074 - 21843006
Alignment:
Q  92 ttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgtttt 160  Q
    ||||||| || ||||| ||||| |||||||| | |||||||||||||||| |||||  |||||||||||    
T  21843074 ttgtattgttttcattcgagtcattgtaatttacttttatcctaaatcatgcaactctataggtgtttt 21843006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 153
Target Start/End: Complemental strand, 28278494 - 28278434
Alignment:
Q  93 tgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcatag 153  Q
    |||||| || ||| |||||||||||||||||| |||||||||| ||||| ||||| |||||    
T  28278494 tgtattattttcacttgagtcgttgtaattcacttttatcctagatcatgcaactccatag 28278434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 189
Target Start/End: Original strand, 35031731 - 35031843
Alignment:
Q  78 gtttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttt-tagtgag 176  Q
    ||||||| || || ||||||| || ||| | |||||||||||| | | |||||||||| ||||| ||| | |||||||||||||||| |||| |||| ||    
T  35031731 gtttgaggaacatattgtattgttttcactcgagtcgttgtaacttacttttatcctagatcatgcaattccataggtgttttgagtgttttgtagtcag 35031830  T
Q  177 aaataatataaat 189  Q
     ||| ||||||||    
T  35031831 gaatcatataaat 35031843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 263
Target Start/End: Complemental strand, 17884588 - 17884542
Alignment:
Q  217 caaggatatgaagattgaagataaatggttcttagaaggtttttgaa 263  Q
    |||||||||||||| ||||||| | || |||||||||||||||||||    
T  17884588 caaggatatgaagaatgaagatcattgattcttagaaggtttttgaa 17884542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 253
Target Start/End: Original strand, 1732656 - 1732756
Alignment:
Q  154 gtgttttgagtctttttagtgagaaataatataaatcggaaaagcaaaatatcttatgaag-atcaaggatatgaagattgaagataaatggttcttaga 252  Q
    ||||||||||||||||| || |||||| || ||||| |  ||| ||| | |||  |||||| || ||| ||||||||||||||||| |||| ||||||||    
T  1732656 gtgttttgagtctttttggtaagaaatcatgtaaattgacaaaacaagacatcacatgaaggattaagaatatgaagattgaagatcaatgattcttaga 1732755  T
Q  253 a 253  Q
    |    
T  1732756 a 1732756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 92 - 269
Target Start/End: Original strand, 21440 - 21619
Alignment:
Q  92 ttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtcttttt-agtgagaaataatataaatc 190  Q
    ||||||| || ||| | |||||||||||||||| |||||||||||||||| ||||||||||  ||||||| || ||||  |||||| ||| || ||||||    
T  21440 ttgtattgttttcactcgagtcgttgtaattcacttttatcctaaatcatgcaacttcataattgttttgggtgttttgcagtgaggaatcatgtaaatc 21539  T
Q  191 ggaaaagcaaaatatcttatgaag-atcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    |  ||| ||| | ||   |||||| ||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  21540 gacaaaccaagacattacatgaaggatcaatgatatgaagattgaagatcaatggttcttagaaggtttttaaagacaat 21619  T

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Target: scaffold0188 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 110 - 269
Target Start/End: Complemental strand, 27009 - 26848
Alignment:
Q  110 agtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtcttt-ttagtgagaaataatataaatcggaaaagcaaaatatctt 208  Q
    |||| |||||||| | |||||||||||||||| ||||| |||||||||||||||| |||  ||||||||||| || |||||||  |||  || | |||      
T  27009 agtcattgtaatttacttttatcctaaatcatacaactacataggtgttttgagtgtttagtagtgagaaatcatgtaaatcgacaaattaagacatcac 26910  T
Q  209 atg-aagatcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
     || ||||||||||||||||| ||||||| | |||||||||||||| ||| |||||||||||    
T  26909 gtgaaagatcaaggatatgaaaattgaagttcaatggttcttagaaagttcttgaagacaat 26848  T

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Target: scaffold0190 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 90 - 169
Target Start/End: Complemental strand, 11771 - 11692
Alignment:
Q  90 ttttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttt 169  Q
    ||||||||  || |||||||| ||||||||||||| |||| ||||||||||| ||||| ||| |||||||||||||||||    
T  11771 ttttgtatagttttcatttgaatcgttgtaattcagttttgtcctaaatcatgcaactacatgggtgttttgagtctttt 11692  T

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Target: scaffold0386 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 269
Target Start/End: Complemental strand, 11746 - 11692
Alignment:
Q  215 atcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    ||||||||||| |||| |||| |||||| ||||||||||||||||||||| ||||    
T  11746 atcaaggatattaagaatgaatataaatagttcttagaaggtttttgaagtcaat 11692  T

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Target: scaffold0386; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 109 - 191
Target Start/End: Complemental strand, 13126 - 13043
Alignment:
Q  109 gagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttt-tagtgagaaataatataaatcg 191  Q
    |||| |||| |||||| ||||||||||||| || ||||| || ||||||||||||| |||| ||||||| ||| || |||||||    
T  13126 gagttgttggaattcacttttatcctaaattatgcaactccacaggtgttttgagtgttttgtagtgaggaatcatgtaaatcg 13043  T

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Target: scaffold0065 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 133 - 191
Target Start/End: Original strand, 12328 - 12387
Alignment:
Q  133 ctaaatcattcaacttcataggtgttttgagtctttt-tagtgagaaataatataaatcg 191  Q
    ||||||||| ||||| |||||||||||||||| |||| ||||||||||| || |||||||    
T  12328 ctaaatcatgcaactccataggtgttttgagtgttttgtagtgagaaatcatgtaaatcg 12387  T

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Target: scaffold0011 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 103 - 146
Target Start/End: Complemental strand, 228245 - 228202
Alignment:
Q  103 tcatttgagtcgttgtaattcatttttatcctaaatcattcaac 146  Q
    ||||| |||||||||||||||||||||||| |||||||| ||||    
T  228245 tcattcgagtcgttgtaattcatttttatcataaatcatgcaac 228202  T

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Target: scaffold1026 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold1026
Description:

Target: scaffold1026; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 180
Target Start/End: Complemental strand, 1907 - 1817
Alignment:
Q  90 ttttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttttagtgagaaat 180  Q
    ||||||||| || |||||  |||| |||||||  | ||||||||||||| || ||||||  |||||  ||||| |||||||||||||||||    
T  1907 ttttgtattgttttcattctagtcattgtaatctagttttatcctaaattatgcaactttgtaggttatttgaatctttttagtgagaaat 1817  T

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Target: scaffold0282 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 269
Target Start/End: Complemental strand, 22560 - 22507
Alignment:
Q  215 atcaaggatatgaagattgaagataaatggttcttagaaggtttttgaagacaat 269  Q
    |||||||||||||||| ||||| | |||||||| |||||||||||| ||||||||    
T  22560 atcaaggatatgaagaatgaag-tcaatggttcatagaaggttttttaagacaat 22507  T

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Target: scaffold0113 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 171
Target Start/End: Complemental strand, 47869 - 47813
Alignment:
Q  115 ttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtcttttta 171  Q
    |||||||||| |||  ||| |||| ||||||||||||| ||||||||| ||||||||    
T  47869 ttgtaattcaatttattcccaaattattcaacttcatacgtgttttgattcttttta 47813  T

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