View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10720_high_13 (Length: 280)

Name: NF10720_high_13
Description: NF10720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10720_high_13
NF10720_high_13
[»] chr8 (4 HSPs)
chr8 (34-227)||(36969281-36969474)
chr8 (154-227)||(36958930-36959003)
chr8 (85-159)||(36962978-36963052)
chr8 (17-59)||(36963050-36963092)


Alignment Details
Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 34 - 227
Target Start/End: Complemental strand, 36969474 - 36969281
Alignment:
Q  34 ccattccatcctgctagag--gtatatactgttgattgtcaaaatgtgaatccataggtgttgaggttatcattgcacgttattacaggtcatattgtct 131  Q
    ||||||||||||||| |||  |||||||||| ||| |||||||||||||||||||||||||||||||||||||| | |||||||||||  ||||||        
T  36969474 ccattccatcctgctggagcagtatatactgctgactgtcaaaatgtgaatccataggtgttgaggttatcattccgcgttattacagaccatatt---- 36969379  T
Q  132 cattgcaaaaatttcctactgtgaatgtcttgaatcttgatgcttccacacagt----tcatcaatacatcaaatcatactaggcatatagaggtaacaa 227  Q
      ||||||||||||||||| || ||||||||||||||||||||||| |||||||    ||||| ||||||||||||||||||| |||||||| |||||||    
T  36969378 --ttgcaaaaatttcctaccgtaaatgtcttgaatcttgatgcttctacacagttcattcatccatacatcaaatcatactagtcatatagaagtaacaa 36969281  T

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Target: chr8; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 36959003 - 36958930
Alignment:
Q  154 gaatgtcttgaatcttgatgcttccacacagttcatcaatacatcaaatcatactaggcatatagaggtaacaa 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36959003 gaatgtcttgaatcttgatgcttccacacagttcatcaatacatcaaatcatactaggcatatagaggtaacaa 36958930  T

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Target: chr8; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 85 - 159
Target Start/End: Complemental strand, 36963052 - 36962978
Alignment:
Q  85 ataggtgttgaggttatcattgcacgttattacaggtcatattgtctcattgcaaaaatttcctactgtgaatgt 159  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  36963052 ataggtgttgaggttatcattgcacgttattacaggccatattgtctcattgcaaaaatttcctactgtgaatgt 36962978  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 36963092 - 36963050
Alignment:
Q  17 gttttcatgggcatgtaccattccatcctgctagaggtatata 59  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  36963092 gttttcatgggcatgtaccattccatcctgctagaggtatata 36963050  T

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