View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10720_high_18 (Length: 241)
Name: NF10720_high_18
Description: NF10720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10720_high_18 |
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Alignment Details
Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 68 - 133
Target Start/End: Complemental strand, 10728574 - 10728509
Alignment:
| Q |
68 |
ttgagtgttcatcatgatttttgctataagcatcaaataagttgtttatccaaattgggtcttaat |
133 |
Q |
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| T |
10728574 |
ttgagtgttcatcatgatttttgctataagcatcaaataagttgtttatccaaattgggtcttaat |
10728509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 10729153 - 10729091
Alignment:
| Q |
1 |
tcacttgttcccctttaatatcatatcaaaagggtgtttcataatgtatcatatcatatcaaa |
63 |
Q |
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| T |
10729153 |
tcacttgttcccctttaatatcatatcaaaagggtgtttcataatgtaccatatcatatcaaa |
10729091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 10728445 - 10728399
Alignment:
| Q |
177 |
tagcactgctcttatgagctaaataagttgatttcagtctccataat |
223 |
Q |
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| T |
10728445 |
tagcactgctcttatgagctaaataagttgatttcagtctccataat |
10728399 |
T |
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