View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10720_high_22 (Length: 228)
Name: NF10720_high_22
Description: NF10720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10720_high_22 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 16 - 211
Target Start/End: Complemental strand, 36480868 - 36480673
Alignment:
| Q |
16 |
agagaaacattaaatgcataaattttgttagatttgatgaaaaagaaaaactgaactaagtgggtgactctcgttatcgtttgttgctggcaatttaatt |
115 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
36480868 |
agagaaacatttaatgcataaattttgttagatttgatgaaaaagaaaaactgaactaagtgggtgactctcattatcgtttgttgctggcaatttaatt |
36480769 |
T |
|
| Q |
116 |
cagcacaagtacatcagttgaatattcaaaatatcttaaaaatcatttacttgttattgtgacatgagcagtaaggacaaaggacatagggagggt |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36480768 |
tagcacaagtacatcagttgaatattcaaaatatcttaaaaatcatttacttgttattgtgacatgagcagtaaggacaaaggacatagggagggt |
36480673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 25 - 117
Target Start/End: Complemental strand, 36439202 - 36439110
Alignment:
| Q |
25 |
ttaaatgcataaattttgttagatttgatgaaaaagaaaaactgaactaagtgggtgactctcgttatcgtttgttgctggcaatttaattca |
117 |
Q |
| |
|
||||||||||||||||||||||| |||| | ||||| |||||| | ||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
36439202 |
ttaaatgcataaattttgttagaattgaaggaaaaggaaaactcgaataagtgggtgagtctcgttatcgtttgttgctggcaatttaattca |
36439110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University