View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10720_high_23 (Length: 227)

Name: NF10720_high_23

Description: NF10720

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF10720_high_23

[»] chr5 (6 HSPs)

Alignment Details

Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 6)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 152; E-Value: 1e-80

Query Start/End: Original strand, 76 - 227

Target Start/End: Original strand, 13880988 - 13881139

Alignment:

Q	76	tttgaggataagatgaaaattataatgttatatttccatcagatttgaagactgactgagaagctcaaatggtggcctctgcatcacctccttcactgtt	175	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	13880988	tttgaggataagatgaaaattataatgttatatttccatcagatttgaagactgactgagaagctcaaatggtggcctctgcatcacctccttcactgtt	13881087	T

Q	176	aaggggcatgagtctgttatccagaagtatgtgaatgtagtttctggattcc	227	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	13881088	aaggggcatgagtctgttatccagaagtatgtgaatgtagtttctggattcc	13881139	T

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Target: chr5; HSP #2

Raw Score: 119; E-Value: 6e-61

Query Start/End: Original strand, 76 - 226

Target Start/End: Original strand, 13254381 - 13254531

Alignment:

Q	76	tttgaggataagatgaaaattataatgttatatttccatcagatttgaagactgactgagaagctcaaatggtggcctctgcatcacctccttcactgtt	175	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|
T	13254381	tttgaggataagatgaaaattataatgtaacattttcatcagatttgaagactgactgagaacctcaaatggtggcctatgtatcacctccttcattgtt	13254480	T

Q	176	aaggggcatgagtctgttatccagaagtatgtgaatgtagtttctggattc	226	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|
T	13254481	aaggggcatgagtctgttatccagaagtatgtgaatgcagtttctggattc	13254531	T

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Target: chr5; HSP #3

Raw Score: 71; E-Value: 3e-32

Query Start/End: Original strand, 1 - 79

Target Start/End: Original strand, 13880759 - 13880836

Alignment:

Q	1	agatgtagttactgcagctaccaatttcataaacattgaattgattttttcacaaatcctccaccattgatctactttg	79	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	13880759	agatgtagttactgcagctaccaatttcataaacattgaattga-tttttcacaaatcctccaccattgatctactttg	13880836	T

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Target: chr5; HSP #4

Raw Score: 69; E-Value: 4e-31

Query Start/End: Original strand, 131 - 227

Target Start/End: Complemental strand, 14367395 - 14367299

Alignment:

Q	131	ctgagaagctcaaatggtggcctctgcatcacctccttcactgttaaggggcatgagtctgttatccagaagtatgtgaatgtagtttctggattcc	227	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \| \|\|\| \|\|\|\|\|\|\|\|\|\|
T	14367395	ctgagaacctcaaatggtggcttatgcatcacctccttcactgttaaggggcatgagtctgttatccagaagtatgagaacgcagtctctggattcc	14367299	T

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Target: chr5; HSP #5

Raw Score: 39; E-Value: 0.0000000000003

Query Start/End: Original strand, 11 - 49

Target Start/End: Original strand, 13254239 - 13254277

Alignment:

Q	11	actgcagctaccaatttcataaacattgaattgattttt	49	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	13254239	actgcagctaccaatttcataaacattgaattgattttt	13254277	T

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Target: chr5; HSP #6

Raw Score: 35; E-Value: 0.00000000008

Query Start/End: Original strand, 13 - 79

Target Start/End: Original strand, 13878079 - 13878144

Alignment:

Q	13	tgcagctaccaatttcataaacattgaattgattttttcacaaatcctccaccattgatctactttg	79	Q
		\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	13878079	tgcagccaccaatttcatcaccattgaattgatttcc-cacatatcctccaccattgatctactttg	13878144	T

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