View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10720_high_3 (Length: 402)
Name: NF10720_high_3
Description: NF10720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10720_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 32704529 - 32704152
Alignment:
| Q |
1 |
cataactaggacatatgaacgaatgcaacaaatgaagtgttacttattaaagaaacaacaaacaatgtcgttgattgttaaggtccatgaccaaggtggg |
100 |
Q |
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| T |
32704529 |
cataactaggacatatgaacgaatgcaacaaatgaagtgttacttactaaagaaacaacaaacaatgtcgttgattgctaaggtccatgaccaaggtggg |
32704430 |
T |
|
| Q |
101 |
aaggatatttaatcgcatgagaggtgttaaaggatttagacgaggcattcccagctgatacctaagtattccccaacaaagaagttgtcacccctgatga |
200 |
Q |
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|||||| |||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32704429 |
aaggatttttaatcgcatgag--gtgttgaaggatttagacgagtcattcccagctgatacctaagtattccccaacaaagaagttgtcaccccagatga |
32704332 |
T |
|
| Q |
201 |
gtcaattacgactaattaagaaacaatggatgtccatacaaatattattaatacacaccaatgctatgtgat-atgacccataactaat-agtgaaaatg |
298 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||| |
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| T |
32704331 |
gtcaatcacgactaattaagaaacaatggatgtccatacaaatattattaat--acaccaatgctatgtgatcatgacccataactaataagtgaaaatg |
32704234 |
T |
|
| Q |
299 |
tctctaattttccaacttgtccagagatagtcgattacgaaaatatagttgcatcagttgacttcctaaagtgggtgacgag |
380 |
Q |
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|||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32704233 |
tctctaatattccaacttgtccagagatagtcgagtacaaaaatatagttgcatcagttgacttcctaaagtgggtgacgag |
32704152 |
T |
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