View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10720_high_6 (Length: 372)
Name: NF10720_high_6
Description: NF10720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10720_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 13881231 - 13881506
Alignment:
| Q |
1 |
ttaaacgcaatactatcataaatttagtaacacaagctgattttatgataggatgagaccatctgcttccaatatcttaactttctgcaatccaatgata |
100 |
Q |
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| T |
13881231 |
ttaaacgcaatactatcataaatttagtaacacaagctggttttatgataggatgagaccatctgcttccaatatcttaactttctgcaatccaatgata |
13881330 |
T |
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| Q |
101 |
gtcaatctaaacgactattccacccataggttaacatgtttgttcagtaacacaagttgaatagacagcgtctttggtttaggacactgcgaggaaataa |
200 |
Q |
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| T |
13881331 |
gtcaatctaaacgactattccaccaataggttaacatgtttgttcagtaacacaagttgaatagacagcgtctttggtttaggacactgcgaggaaataa |
13881430 |
T |
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| Q |
201 |
accatgttacaaaacatataacactacttaaaactccaggagcatatttaaataggcaagagtcaaacttcaaatg |
276 |
Q |
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| T |
13881431 |
accatgttacaaaacatataacactacttaaaactccaggagcatatttaaataggcaagagtcaaacttcaaatg |
13881506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 53 - 123
Target Start/End: Original strand, 13254689 - 13254759
Alignment:
| Q |
53 |
atgagaccatctgcttccaatatcttaactttctgcaatccaatgatagtcaatctaaacgactattccac |
123 |
Q |
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| T |
13254689 |
atgagaccatctgcttccaatatctgaactttctgcaatccaatgatagtcgacctaaatgactattccac |
13254759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 307 - 354
Target Start/End: Original strand, 13881527 - 13881574
Alignment:
| Q |
307 |
gcatattcaatacgatatatgttctaatcgtgtagaacacaagcattt |
354 |
Q |
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| T |
13881527 |
gcatattcaatacgatatatgttctaatcgtgtagaacacaagcattt |
13881574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 155 - 226
Target Start/End: Original strand, 16022307 - 16022378
Alignment:
| Q |
155 |
agttgaatagacagcgtctttggtttaggacactgcgaggaaataaaccatgttacaaaacatataacacta |
226 |
Q |
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| T |
16022307 |
agttgaatagacagtgtctttggttttggtgactgcaatgaaataaaccatgttacagaacatataacacta |
16022378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 157 - 235
Target Start/End: Complemental strand, 14389836 - 14389758
Alignment:
| Q |
157 |
ttgaatagacagcgtctttggtttaggacactgcgaggaaataaaccatgttacaaaacatataacactacttaaaact |
235 |
Q |
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| T |
14389836 |
ttgaatagaaagtgtctttggttttggtgactgcaataaaataaaccatgttacaaaacatataacactccttaaaact |
14389758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 26 - 139
Target Start/End: Complemental strand, 14367184 - 14367070
Alignment:
| Q |
26 |
agtaacacaagctgattttatgataggatgagaccatctgcttccaatatcttaactttctgcaatcc-aatgatagtcaatctaaacgactattccacc |
124 |
Q |
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| T |
14367184 |
agtaacacaagctggttttatattagaatgagaccatctgctcccaatatctgaacttgctgtaaaccaaatagtaatcaatctaaattcctattccact |
14367085 |
T |
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| Q |
125 |
cataggttaacatgt |
139 |
Q |
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| T |
14367084 |
cacaggttaacatgt |
14367070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 138
Target Start/End: Original strand, 13878561 - 13878638
Alignment:
| Q |
61 |
atctgcttccaatatcttaactttctgcaatccaatgatagtcaatctaaacgactattccacccataggttaacatg |
138 |
Q |
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| T |
13878561 |
atctgctcccaatatcttaacttgctgcaaaccaatgataatcaatctatatacctattcaactcacaggttaacatg |
13878638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 13856744 - 13856788
Alignment:
| Q |
194 |
gaaataaaccatgttacaaaacatataacactacttaaaactcca |
238 |
Q |
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| T |
13856744 |
gaaataaaccatgttaccaaacatataacactccttaaaattcca |
13856788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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