View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10720_low_12 (Length: 334)
Name: NF10720_low_12
Description: NF10720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10720_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 104; Significance: 8e-52; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 175 - 319
Target Start/End: Original strand, 40110469 - 40110608
Alignment:
| Q |
175 |
acaaataatatttacagaatgacatcttcttttttatcagtagagtagaccatcaaattgatgtcactttacgacggaatttgtatacaagtttcatagt |
274 |
Q |
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| T |
40110469 |
acaaataatatttacagaatgacatctt----tttattaaaagagtagaccatcaaattgatgtcactttacg-cggaatttgtatacaagtttcatagt |
40110563 |
T |
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| Q |
275 |
actacttaataatttaagtttttaagcataaactccttataagtg |
319 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
40110564 |
actagttaataatttaagtttttaagcataaactccttataagtg |
40110608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 7 - 157
Target Start/End: Original strand, 40110332 - 40110481
Alignment:
| Q |
7 |
ttagtcgggtttaagtctatgtatcaactatagtttgtggtannnnnnncccttattttcaaggattttaacagctatagattcacacaattttaaatat |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||| |||||||||| |
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| T |
40110332 |
ttagtcgggtttaagtctatgtatcaactatagtttgtggtatttttt-cccttattttcaaagattttaatagctatagattcacacatttttaaatat |
40110430 |
T |
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| Q |
107 |
agagaaatgaaaaatttagtgttcgaataccggtatctataaataatattt |
157 |
Q |
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||| |||||||||||| | |||||||||||||||||||| ||||||||||| |
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| T |
40110431 |
agaaaaatgaaaaattcaatgttcgaataccggtatctacaaataatattt |
40110481 |
T |
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