View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10720_low_13 (Length: 317)
Name: NF10720_low_13
Description: NF10720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10720_low_13 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 76738 - 77015
Alignment:
| Q |
1 |
agaatattcataaaaattaaactaactttatgatgtgacatgacatctttattattctgcttctatagtgaatttcagtttttgtaaggctatatactct |
100 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
76738 |
agaatattcataaaagttaaactaactttatgatgtgacatgacatctttattattctgcttctatagtgaatttcagtttttgtaaggttatatactct |
76837 |
T |
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| Q |
101 |
gtatttggtcatgaattgnnnnnnncattccatcatatacatacattaagcccaaaaacattaattaaagtgtttaattaaattggaatctccatttttg |
200 |
Q |
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| T |
76838 |
gtatttggtcatgaattgtttttttcattccatcat----atacattaagcccaaaaacattaattaaagtgtttaattaaattggaatctccatttttg |
76933 |
T |
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| Q |
201 |
tttcatattaaggtttttagttaagcatcactctgaaccaaacatttgtacggactaaaaaatgctgtctgttgaagaatca |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
76934 |
tttcatattaaggtttttagttaagcatcactctgaaccaaacatttgtacggactaaaaaatgctgtctgttgaagaatca |
77015 |
T |
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Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 40889546 - 40889269
Alignment:
| Q |
1 |
agaatattcataaaaattaaactaactttatgatgtgacatgacatctttattattctgcttctatagtgaatttcagtttttgtaaggctatatactct |
100 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
40889546 |
agaatattcataaaagttaaactaactttatgatgtgacatgacatctttattattctgcttctatagtgaatttcagtttttgtaaggttatatactct |
40889447 |
T |
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| Q |
101 |
gtatttggtcatgaattgnnnnnnncattccatcatatacatacattaagcccaaaaacattaattaaagtgtttaattaaattggaatctccatttttg |
200 |
Q |
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| T |
40889446 |
gtatttggtcatgaattgtttttttcattccatcat----atacattaagcccaaaaacattaattaaagtgtttaattaaattggaatctccatttttg |
40889351 |
T |
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| Q |
201 |
tttcatattaaggtttttagttaagcatcactctgaaccaaacatttgtacggactaaaaaatgctgtctgttgaagaatca |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40889350 |
tttcatattaaggtttttagttaagcatcactctgaaccaaacatttgtacggactaaaaaatgctgtctgttgaagaatca |
40889269 |
T |
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