View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10720_low_15 (Length: 299)
Name: NF10720_low_15
Description: NF10720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10720_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 11 - 292
Target Start/End: Complemental strand, 36958370 - 36958088
Alignment:
| Q |
11 |
acatcagtagataagaaaagttggaaactctgtatggtaacnnnnnnnn-tctggctggtgcttgtaagtaggactcnnnnnnnnnnnctttagtttatg |
109 |
Q |
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| T |
36958370 |
acatcagtagataagaaaagttggaaactctgtatggtaacaaaaaaaaatctggctggtgcttgtaagtaggactcaaaaaaaaaaactttagtttatg |
36958271 |
T |
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| Q |
110 |
attgttgtttcactagtaaaattaaattaacacttgcataactatataagcttcttcttctggaaaaatctcttcaaatgccacaattgtaaagctgaaa |
209 |
Q |
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| T |
36958270 |
attgttgtttcactagtaaaattaaattaacacttgcataactatataagcttcttcttctggaaaaatctcttcaaatgccacaattgtaaagctgaaa |
36958171 |
T |
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| Q |
210 |
ctccaatgcagatacctaacgacataatactaaaccatgccactctgccattcgttctttcactcacgatcctcatctctgct |
292 |
Q |
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| T |
36958170 |
ctccaatgcagatacctaacgacataatactaaaccatgccactctgccattcgttctttcactcacgatcctcatctctgct |
36958088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 106 - 292
Target Start/End: Complemental strand, 36972658 - 36972471
Alignment:
| Q |
106 |
tatgattgttgtttcactagtaaaattaaattaacacttgcataac-tatataagcttcttcttctggaaaaatctcttcaaatgccacaattgtaaagc |
204 |
Q |
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| T |
36972658 |
tatgatcgttgtttcactagtaaaataaaattaatgctggaataacctatataagcttcttcttctggaagaatctcttcaaatgccacaattgcaaagc |
36972559 |
T |
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| Q |
205 |
tgaaactccaatgcagatacctaacgacataatactaaaccatgccactctgccattcgttctttcactcacgatcctcatctctgct |
292 |
Q |
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| T |
36972558 |
tgaaactccaatgcagatacctaaagacataatactaaaccatgccactctgccatttgttctttcactcacaatcctcatctctgct |
36972471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 155 - 292
Target Start/End: Complemental strand, 866317 - 866180
Alignment:
| Q |
155 |
ataagcttcttcttctggaaaaatctcttcaaatgccacaattgtaaagctgaaactccaatgcagatacctaacgacataatactaaaccatgccactc |
254 |
Q |
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| T |
866317 |
ataagcttcttcttctggaagtatcttttcaaatgccacaactgcaaaactgaaactgcaatgcaaatacccaaagacataaaactaaaccatgccactc |
866218 |
T |
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| Q |
255 |
tgccattcgttctttcactcacgatcctcatctctgct |
292 |
Q |
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| T |
866217 |
ttgcatttgttgattcactcactgtcctcatccctgct |
866180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 102 - 195
Target Start/End: Original strand, 5869615 - 5869709
Alignment:
| Q |
102 |
agtttatgattgttgtttcactagtaaaattaaattaacacttgcataa-ctatataagcttcttcttctggaaaaatctcttcaaatgccacaa |
195 |
Q |
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|||||||||| ||||||||||||| |||| || |||||||| ||||| | |||||||| |||||||||||| ||||||||||| |||||||| |
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| T |
5869615 |
agtttatgatctttgtttcactagtgaaataaagttaacactagcatagtcaatataagcgtcttcttctggaggaatctcttcaagtgccacaa |
5869709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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