View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10720_low_16 (Length: 292)
Name: NF10720_low_16
Description: NF10720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10720_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 282
Target Start/End: Original strand, 26606621 - 26606893
Alignment:
| Q |
17 |
ataactacaggaatggttttgagaatnnnnnnnn-ggcgtctttatataaatatcaaggtatctaaaagaggggttgctcaaagaataagattagaagat |
115 |
Q |
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|||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
26606621 |
ataactacaggaatggttttgagaataaaaaaaaaggcgtctttaaataaatatcaaggtttctaaaagaggggtcgctcaaagaataagattagaagat |
26606720 |
T |
|
| Q |
116 |
aaaaacaagagtgctagcaatgtgagtgagaaattaaaaacaaaggaaaataaatagc------cggaaagcaagatttgaatgattaccgtttggtata |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
26606721 |
aaaaacaagagtgctagcaatgtgagtgagaaattaaaaacaaaggaaaataaatagcaatgcaaggaaagcaagatttgaatgattaccgtttggtata |
26606820 |
T |
|
| Q |
210 |
gttgattcaacatgggttaactagtttcactcgtttgcacgtcgaggcagagtttacaacgactatttctctg |
282 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26606821 |
gttgattcaacacgggttaactagtttcactcgtttgcacgtcgaggcagagtttacaacgactatttctctg |
26606893 |
T |
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