View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10720_low_19 (Length: 280)

Name: NF10720_low_19
Description: NF10720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10720_low_19
NF10720_low_19
[»] chr8 (4 HSPs)
chr8 (34-227)||(36969281-36969474)
chr8 (154-227)||(36958930-36959003)
chr8 (85-159)||(36962978-36963052)
chr8 (17-59)||(36963050-36963092)


Alignment Details
Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 34 - 227
Target Start/End: Complemental strand, 36969474 - 36969281
Alignment:
Q  34 ccattccatcctgctagag--gtatatactgttgattgtcaaaatgtgaatccataggtgttgaggttatcattgcacgttattacaggtcatattgtct 131  Q
    ||||||||||||||| |||  |||||||||| ||| |||||||||||||||||||||||||||||||||||||| | |||||||||||  ||||||        
T  36969474 ccattccatcctgctggagcagtatatactgctgactgtcaaaatgtgaatccataggtgttgaggttatcattccgcgttattacagaccatatt---- 36969379  T
Q  132 cattgcaaaaatttcctactgtgaatgtcttgaatcttgatgcttccacacagt----tcatcaatacatcaaatcatactaggcatatagaggtaacaa 227  Q
      ||||||||||||||||| || ||||||||||||||||||||||| |||||||    ||||| ||||||||||||||||||| |||||||| |||||||    
T  36969378 --ttgcaaaaatttcctaccgtaaatgtcttgaatcttgatgcttctacacagttcattcatccatacatcaaatcatactagtcatatagaagtaacaa 36969281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 36959003 - 36958930
Alignment:
Q  154 gaatgtcttgaatcttgatgcttccacacagttcatcaatacatcaaatcatactaggcatatagaggtaacaa 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36959003 gaatgtcttgaatcttgatgcttccacacagttcatcaatacatcaaatcatactaggcatatagaggtaacaa 36958930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 85 - 159
Target Start/End: Complemental strand, 36963052 - 36962978
Alignment:
Q  85 ataggtgttgaggttatcattgcacgttattacaggtcatattgtctcattgcaaaaatttcctactgtgaatgt 159  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  36963052 ataggtgttgaggttatcattgcacgttattacaggccatattgtctcattgcaaaaatttcctactgtgaatgt 36962978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 36963092 - 36963050
Alignment:
Q  17 gttttcatgggcatgtaccattccatcctgctagaggtatata 59  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  36963092 gttttcatgggcatgtaccattccatcctgctagaggtatata 36963050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University