View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10720_low_2 (Length: 410)
Name: NF10720_low_2
Description: NF10720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10720_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 23 - 404
Target Start/End: Original strand, 4082783 - 4083164
Alignment:
| Q |
23 |
atatatatttctataggaatttgaattccccagacacccttcaatcatcatttgccaagaaacaaaaccattaaatagcaagaacaagacaaagaacata |
122 |
Q |
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| T |
4082783 |
atatatatttctataggaatttcaattccccagacacccttcaatcatcatttgccaagaaacaaaaccattaaatcgcaggaacaagacaaagaacata |
4082882 |
T |
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| Q |
123 |
gaacaaattgtcagcaatagaaatcacttacatagataatatcttttgtcatgggaagaagattgccctatgacaatgccaataattcattgataggtcc |
222 |
Q |
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| T |
4082883 |
gaacaaattgtcagcaatagaaatcacttacatcgataatatcttttgtcatgggaagaagattgccctatgacaatgccaacaatttattaataggtcc |
4082982 |
T |
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| Q |
223 |
atttctatatttttcattctccctaataggattagcaacaagcattgccataatcacaactctatgtagtgttcgatttcgaagaagaaaattgacgccg |
322 |
Q |
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| T |
4082983 |
atttctaaatttttcattctccctaataggattagcaacaagcattgccataatcacaactctatgtagtgttcgatttcgaagaagaaaattgacgccg |
4083082 |
T |
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| Q |
323 |
ccccctacaacaccgatatcaaacaccaaagaagccacaaccacggacaaaaacacaacaaacgctacaatattcatctcac |
404 |
Q |
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| T |
4083083 |
ccccctacaacaccgatatcaaacaccaaagaagccacaaccacggacaaaaacacaacaaacgctacaatattcatgtcac |
4083164 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 265 - 308
Target Start/End: Complemental strand, 48203072 - 48203029
Alignment:
| Q |
265 |
cattgccataatcacaactctatgtagtgttcgatttcgaagaa |
308 |
Q |
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| T |
48203072 |
cattgccataatcacaactatatgtagttttcgattccgaagaa |
48203029 |
T |
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