View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10720_low_20 (Length: 276)
Name: NF10720_low_20
Description: NF10720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10720_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 19 - 271
Target Start/End: Original strand, 225536 - 225788
Alignment:
| Q |
19 |
catgaatctcctgaaatcattagcatacaacatcaatttgtgaaacattaatataattataaactataaactacatacaatccgaaccagaatcctgatt |
118 |
Q |
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| T |
225536 |
catgaatctcctgaaatcattagcatacaacatcaatttgtgaaacattaatataattataaactataaactatatacaatccgaactagaatcctgatt |
225635 |
T |
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| Q |
119 |
gtaacaatctttgatcaagttttacttaccttctggctaaacctggaggaataggtccaggccaagtttgagaaggattggtgaatggatagatgtgaga |
218 |
Q |
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| T |
225636 |
gtaacaatctttgatcaagttttacttaccttctggctaaacctggaggaataggtccaggccaagtttgagaaggattggtgaatggatagatgtgaga |
225735 |
T |
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| Q |
219 |
aagagcagcttgccaaaaacattcagttcgaaaaagagatgccctatgcttct |
271 |
Q |
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| T |
225736 |
aagagcagcttgccaaaaacattcagttcggaaaagagatgcccactgcttct |
225788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 19 - 271
Target Start/End: Original strand, 233136 - 233379
Alignment:
| Q |
19 |
catgaatctcctgaaatcattagcatacaacatcaatttgtgaaacattaatataattataaactataaactacatacaatccgaaccagaatcctgatt |
118 |
Q |
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||||||| ||||||||| |||| ||||||| |||||||||||||||| ||||||| |||||||||||||| |||| |||| ||||||||| |
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| T |
233136 |
catgaatatcctgaaattattaacatacaatatcaatttgtgaaacactaatata--------ctataaactacatagaatcagaactcaaatcctgata |
233227 |
T |
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| Q |
119 |
gtaacaatctttgatcaagttttacttaccttctggctaaacctggaggaataggtccaggccaagtttgagaaggattggtgaatggatagatgtgaga |
218 |
Q |
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||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
233228 |
gtaacaatctta-atcaagttttacttactttctgactaaacctggaggaataggtctaggccaagtttgagaaggattggtgaatggatagatgtgaga |
233326 |
T |
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| Q |
219 |
aagagcagcttgccaaaaacattcagttcgaaaaagagatgccctatgcttct |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
233327 |
aagagcagcttgccaaaaacattcagttcgaaaaagagatgcccactgcttct |
233379 |
T |
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