View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10720_low_26 (Length: 242)
Name: NF10720_low_26
Description: NF10720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10720_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 11 - 226
Target Start/End: Complemental strand, 43372949 - 43372738
Alignment:
| Q |
11 |
caaaggccctaagcttacaaataaaatacaaaaagccctaagcctagagttgtgtaaatttcattttatttcaattttttcaaagtgtggtataatctcg |
110 |
Q |
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| T |
43372949 |
caaaggccctaagcttacaaataaaatacaaaaagccctaagcctagagttgtgtaaatttcattttatttcaattttttcaaagtgtggtataatccca |
43372850 |
T |
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| Q |
111 |
aaatgctgctatatcattaatttctctatatctgataccgaactaagtatgttttgtgatattaattaataatcaatattataagtttcctatactaaga |
210 |
Q |
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| T |
43372849 |
aaatgctgctatatcattaatttctctatatctgataccgaactaagtatgttttatgat----attaataatcaatattataagtttcctatactaaga |
43372754 |
T |
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| Q |
211 |
aaaactaccatacaac |
226 |
Q |
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| T |
43372753 |
aaaactaccatacaac |
43372738 |
T |
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