View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10720_low_28 (Length: 240)
Name: NF10720_low_28
Description: NF10720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10720_low_28 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 13404911 - 13405133
Alignment:
| Q |
18 |
aatcatactgaatttgcactttatagctttcttaatttagaaaataaaaatattccctttcaagtgctttaccctgatggggtggaaaatatgttactat |
117 |
Q |
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| T |
13404911 |
aatcatactgaatttgcacttaatagctttcttaatttagaaaataaaaatataccctttcaagtgctttaccctgatggggtggaaaatatgttactat |
13405010 |
T |
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| Q |
118 |
agaactaattcattcttagcattatttaggattaaaaagtaattttgtgaaagtggaaaatgttattatggaacttaattttgtgaaaaatgttttctaa |
217 |
Q |
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| T |
13405011 |
agaactaattcattcttagcattatttaggattaaaaagtaattttgtgaaagtggaaaatgttattatggaacttaattttgtgaaaaatgttttctaa |
13405110 |
T |
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| Q |
218 |
tgaatctgtgtttgtttggcttt |
240 |
Q |
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| T |
13405111 |
tgaatctgtgtttgtttggcttt |
13405133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 171
Target Start/End: Complemental strand, 22522881 - 22522840
Alignment:
| Q |
130 |
ttcttagcattatttaggattaaaaagtaattttgtgaaagt |
171 |
Q |
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|||||||||||| |||||||| |||||||||||||||||||| |
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| T |
22522881 |
ttcttagcattagttaggatttaaaagtaattttgtgaaagt |
22522840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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