View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10720_low_3 (Length: 407)
Name: NF10720_low_3
Description: NF10720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10720_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 20 - 393
Target Start/End: Complemental strand, 21644150 - 21643777
Alignment:
| Q |
20 |
agttcgacaccccggaaattgaaccaacccctaaatcaaagatcttaaaccgacgttctttgcaaaccaaaagaggccatttgagagctgctgcagcttg |
119 |
Q |
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| T |
21644150 |
agttcgacaccccggaaattgaaccaacacctaaatcaaagatcttaaaccgacgttctttgcaaaccaaaagaggccatttgagagctgctgcagcttg |
21644051 |
T |
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| Q |
120 |
ttcacaaggacagaaatttccaccagagacaacaatgtatgcttttttgccaactgttgatctgaatttttcaagaagtggtgaaagtgcttttacttca |
219 |
Q |
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| T |
21644050 |
ttcacaaggacagaaatttccaccagagacaacaatgtatgcttttttgccaactgttgatctgaatttttcaagaagtggtgaaagtgcttttacttca |
21643951 |
T |
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| Q |
220 |
tcaactgaatgtgcataaaagagtgcatcaactttttgagggtacattgctgcccattgtgttatgtagccagatgaaagtgctttccaccattgatcat |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21643950 |
tcaactgaatgtgcataaaagagtgcatcaactttttgagggtacattgctgcccattgtgttatgtagccagatgaaagtgctttccaccattgatcat |
21643851 |
T |
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| Q |
320 |
cgcgtacttgaactatgtctttgaaaattactgttgtttcggatacgtaggctagtctgtgttcactatcaccc |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21643850 |
cgcgtacttgaactatgtctttgaaaattactgttgtttcggatacgtaggctagtctgtgttcactatcaccc |
21643777 |
T |
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