View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10720_low_33 (Length: 229)
Name: NF10720_low_33
Description: NF10720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10720_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 116 - 213
Target Start/End: Complemental strand, 10426336 - 10426239
Alignment:
| Q |
116 |
ttaattcaacgcttcatcgtagtatctcggttctccacattattctctccttttcttctcacctatcccattttcccttatccttccaccctgttttt |
213 |
Q |
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| T |
10426336 |
ttaattcaacgcttcatcgtaatatctccgttctccacattattctctccttttcttctcacctatcccattttcccttatccttccaccctattttt |
10426239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 14 - 85
Target Start/End: Complemental strand, 10426747 - 10426677
Alignment:
| Q |
14 |
gcacgttggaattgatcaatttgaatgatacacatgcctccaaggtcttatctagaatttacagggcttgct |
85 |
Q |
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| T |
10426747 |
gcacattggaattgatcaatttgaatgatacacatgcct-caaggtcttatctagaatttacagagcttgct |
10426677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 213
Target Start/End: Original strand, 24819406 - 24819530
Alignment:
| Q |
90 |
gctattcttttcgtctttgttcctttttaattcaacgcttcatcgtagtatctcggttctccacattattctctccttttcttctcac-ctatcccattt |
188 |
Q |
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| T |
24819406 |
gctattcttttcctctctattcaattttaattcaacgctccatcgtaatatgttcagtctccacattattttctctttttcctctcactctatcgcatct |
24819505 |
T |
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| Q |
189 |
tcccttatccttccaccctgttttt |
213 |
Q |
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| T |
24819506 |
tccctcatccttccaccctattttt |
24819530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 64
Target Start/End: Original strand, 4410888 - 4410938
Alignment:
| Q |
14 |
gcacgttggaattgatcaatttgaatgatacacatgcctccaaggtcttat |
64 |
Q |
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| T |
4410888 |
gcacattggaattgatcaatgtgaatggtacacatgcctccaaggtcttat |
4410938 |
T |
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