View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10720_low_35 (Length: 227)
Name: NF10720_low_35
Description: NF10720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10720_low_35 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 49765830 - 49766056
Alignment:
| Q |
1 |
gcagataaatttggtgtagcattcttattattatcattagcatctctaataatatctcttctattattctgatgattctctttagaagatcctttgctac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49765830 |
gcagataaatttggtgtagcattcttattattatcattagcatctctaataatatctcttctattattctgatgattctctttagaagatcctttgctac |
49765929 |
T |
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| Q |
101 |
taaaagctctcataggactagcgaaagcccaaccccaactctttccaccacggttttgagaaactgtaacagaaccttgttttcctcctccatttacagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49765930 |
taaaagctctcataggactagcgaaagcccaaccccaactctttccaccacggttttgagaaactgtaacagaaccttgttttcctcctccatttacagc |
49766029 |
T |
|
| Q |
201 |
atcatcagcagaattagaagaaaccca |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
49766030 |
atcatcagcagaattagaagaaaccca |
49766056 |
T |
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