View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10720_low_37 (Length: 217)
Name: NF10720_low_37
Description: NF10720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10720_low_37 |
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| [»] scaffold0531 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 117; Significance: 9e-60; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 20 - 184
Target Start/End: Complemental strand, 7973005 - 7972840
Alignment:
| Q |
20 |
ggttggagctggtgttcttggtctcccctttgccatggcagctcttggatggtatatttcaaacccaaattacacttaccatgaaatattctgtaaaata |
119 |
Q |
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| T |
7973005 |
ggttggagctggtgttcttggtctcccctttgccatggcagctcttggatggtatatttcaaaccctaattacacttaccattaaatattctgtaaaata |
7972906 |
T |
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| Q |
120 |
aagagaaacagcttagttttgttatattac-nnnnnnnaaggaaaatatagtattaattatttttg |
184 |
Q |
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| T |
7972905 |
aagagaaacaaattagttttgttatattactttttttaaaggaaaatatagtattaattttttttg |
7972840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 8041036 - 8041137
Alignment:
| Q |
20 |
ggttggagctggtgttcttggtctcccctttgccatggcagctcttggatggtatatttcaaacccaaattacacttaccatgaaatattctgtaaaata |
119 |
Q |
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| T |
8041036 |
ggttggagctggtgttcttggtctccccttttccatggcagctcttggatggtatatttcaaaccctaattacacgcaccatgaaatattctctaaaata |
8041135 |
T |
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| Q |
120 |
aa |
121 |
Q |
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|| |
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| T |
8041136 |
aa |
8041137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 8031668 - 8031769
Alignment:
| Q |
20 |
ggttggagctggtgttcttggtctcccctttgccatggcagctcttggatggtatatttcaaacccaaattacacttaccatgaaatattctgtaaaata |
119 |
Q |
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| T |
8031668 |
ggttggagctggtgttcttggtctccccttttccatggcatatcttggatggtatatttcaaaccctaattacacttgtcatgaagtattctctaacata |
8031767 |
T |
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| Q |
120 |
aa |
121 |
Q |
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|| |
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| T |
8031768 |
aa |
8031769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 7980050 - 7979989
Alignment:
| Q |
20 |
ggttggagctggtgttcttggtctcccctttgccatggcagctcttggatggtatatttcaa |
81 |
Q |
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||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
7980050 |
ggttggagctggtgttcttggtctccctcatgccatggcacaacttggatggtatatttcaa |
7979989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 41383031 - 41382928
Alignment:
| Q |
20 |
ggttggagctggtgttcttggtctcccctttgccatggcagctcttggatggtatatttcaaacccaaattacacttaccatg--aaatattctgtaaaa |
117 |
Q |
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||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||| |
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| T |
41383031 |
ggttggagctggtgttcttggtctccccttttccatggcagcccttggatggtatattttaaacccaaattacacttaccatgaaaaatattctctaaaa |
41382932 |
T |
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| Q |
118 |
taaa |
121 |
Q |
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|||| |
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| T |
41382931 |
taaa |
41382928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0531 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 3998 - 3898
Alignment:
| Q |
20 |
ggttggagctggtgttcttggtctcccctttgccatggcagctcttggatggtatatttcaaacccaaattacacttaccatgaaatattctgtaaaata |
119 |
Q |
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||||||||||||||||||||| ||||||| | |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||| ||||||| |
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| T |
3998 |
ggttggagctggtgttcttggcctcccctattccatggcagctcttggatggtata-ttcaaaccctaattacacttaccatgaaatagtctctaaaata |
3900 |
T |
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| Q |
120 |
aa |
121 |
Q |
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|| |
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| T |
3899 |
aa |
3898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 14199171 - 14199113
Alignment:
| Q |
20 |
ggttggagctggtgttcttggtctcccctttgccatggcagctcttggatggtatattt |
78 |
Q |
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||||||||||||||||||| ||||||| | ||||||||| |||||||||||||||| |
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| T |
14199171 |
ggttggagctggtgttcttagtctcccttatgccatggctcaacttggatggtatattt |
14199113 |
T |
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