View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10720_low_38 (Length: 216)

Name: NF10720_low_38
Description: NF10720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10720_low_38
NF10720_low_38
[»] chr4 (7 HSPs)
chr4 (19-79)||(24421448-24421508)
chr4 (19-79)||(24470215-24470275)
chr4 (181-216)||(24421311-24421346)
chr4 (181-216)||(24470377-24470412)
chr4 (181-216)||(24470569-24470604)
chr4 (184-216)||(24477544-24477576)
chr4 (22-76)||(24477732-24477786)
[»] scaffold0879 (1 HSPs)
scaffold0879 (181-216)||(4428-4463)


Alignment Details
Target: chr4 (Bit Score: 49; Significance: 3e-19; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 24421508 - 24421448
Alignment:
Q  19 ccaccacctccctatgtccacaaatacccaccttattattataaatctccacctccaccat 79  Q
    ||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||    
T  24421508 ccaccacctccatatgtccacaaatacccaccttattactacaaatctccacctccaccat 24421448  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 24470215 - 24470275
Alignment:
Q  19 ccaccacctccctatgtccacaaatacccaccttattattataaatctccacctccaccat 79  Q
    ||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||    
T  24470215 ccaccacctccatatgtccacaaatacccaccttattactacaaatctccacctccaccat 24470275  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 216
Target Start/End: Complemental strand, 24421346 - 24421311
Alignment:
Q  181 tcacctcccccaccatatgtctataagagtccacca 216  Q
    ||||||||||||||||||||||||||||||||||||    
T  24421346 tcacctcccccaccatatgtctataagagtccacca 24421311  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 216
Target Start/End: Original strand, 24470377 - 24470412
Alignment:
Q  181 tcacctcccccaccatatgtctataagagtccacca 216  Q
    ||||||||||||||||||||||||||||||||||||    
T  24470377 tcacctcccccaccatatgtctataagagtccacca 24470412  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 216
Target Start/End: Original strand, 24470569 - 24470604
Alignment:
Q  181 tcacctcccccaccatatgtctataagagtccacca 216  Q
    ||||||||||||||||||||||||||||||||||||    
T  24470569 tcacctcccccaccatatgtctataagagtccacca 24470604  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 216
Target Start/End: Complemental strand, 24477576 - 24477544
Alignment:
Q  184 cctcccccaccatatgtctataagagtccacca 216  Q
    |||||||||||||||||||||||||||||||||    
T  24477576 cctcccccaccatatgtctataagagtccacca 24477544  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 24477786 - 24477732
Alignment:
Q  22 ccacctccctatgtccacaaatacccaccttattattataaatctccacctccac 76  Q
    |||||||||||||||  |||||||||||||||||| || | || |||||||||||    
T  24477786 ccacctccctatgtctgcaaatacccaccttattactacatatatccacctccac 24477732  T

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Target: scaffold0879 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0879
Description:

Target: scaffold0879; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 216
Target Start/End: Original strand, 4428 - 4463
Alignment:
Q  181 tcacctcccccaccatatgtctataagagtccacca 216  Q
    ||||||||||||||||||||||||||||||||||||    
T  4428 tcacctcccccaccatatgtctataagagtccacca 4463  T

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