View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10720_low_39 (Length: 214)
Name: NF10720_low_39
Description: NF10720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10720_low_39 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 13 - 199
Target Start/End: Complemental strand, 30043723 - 30043537
Alignment:
| Q |
13 |
atgaagtaggaaataaaagaatggttaacgagaaggatctaaagaagttgaattatttagatatggtggttgatgagaccttaagactttatcccgtagc |
112 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
30043723 |
atgaagtaggaaataaaagaatggttaacgagaaggatctaaagaagttgaattatttagatatggtggttgatgagaccttaagactttaccccgtagc |
30043624 |
T |
|
| Q |
113 |
accgttactagtccctcgtgaatctagagagagcacaacaattgatggttattttataaaggaaaagacacgacttatagtaaatgc |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30043623 |
accgttactagtccctcgtgaatctagagagagcacaacaattgatggttattttataaaggaaaagacacgacttatagtaaatgc |
30043537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 13 - 199
Target Start/End: Original strand, 29995486 - 29995672
Alignment:
| Q |
13 |
atgaagtaggaaataaaagaatggttaacgagaaggatctaaagaagttgaattatttagatatggtggttgatgagaccttaagactttatcccgtagc |
112 |
Q |
| |
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||||||||||||||||||||| | || | ||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||| || || || |
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| T |
29995486 |
atgaagtaggaaataaaagaaagattgaggagaaagatatgaagaagttgaattatttagatatggtggttgatgagaccttaagactttaccctgttgc |
29995585 |
T |
|
| Q |
113 |
accgttactagtccctcgtgaatctagagagagcacaacaattgatggttattttataaaggaaaagacacgacttatagtaaatgc |
199 |
Q |
| |
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||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29995586 |
accattactagtccctcgtgagtctagagagagcacaataattgatggttattttataaaggaaaagacacgacttatagtaaatgc |
29995672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 13 - 199
Target Start/End: Original strand, 30007275 - 30007461
Alignment:
| Q |
13 |
atgaagtaggaaataaaagaatggttaacgagaaggatctaaagaagttgaattatttagatatggtggttgatgagaccttaagactttatcccgtagc |
112 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||| |||||||| ||||| ||||||||||| |||||||| ||||||||||||||||| || | |
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| T |
30007275 |
atgaagtaggaaataaaagaatggttgaagagaaggatctgaagaagtttaattacttagatatggttgttgatgaaaccttaagactttatcctgttgg |
30007374 |
T |
|
| Q |
113 |
accgttactagtccctcgtgaatctagagagagcacaacaattgatggttattttataaaggaaaagacacgacttatagtaaatgc |
199 |
Q |
| |
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||| ||| || |||||||||||| ||||||||||| |||||||||||| |||||||||| | ||||||| ||| ||||||||||||| |
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| T |
30007375 |
acccttattaatccctcgtgaatgtagagagagcataacaattgatggatattttataacgaaaaagactcgagttatagtaaatgc |
30007461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 13 - 199
Target Start/End: Complemental strand, 30068240 - 30068054
Alignment:
| Q |
13 |
atgaagtaggaaataaaagaatggttaacgagaaggatctaaagaagttgaattatttagatatggtggttgatgagaccttaagactttatcccgtagc |
112 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||| | |||||||||||||| |||||||||||||||||||| ||||||||||| ||||| || || |
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| T |
30068240 |
atgaagtaggaaataaaagaatggttgaagagaaggatttgaagaagttgaattacttagatatggtggttgatgaaaccttaagactgtatcctgttgc |
30068141 |
T |
|
| Q |
113 |
accgttactagtccctcgtgaatctagagagagcacaacaattgatggttattttataaaggaaaagacacgacttatagtaaatgc |
199 |
Q |
| |
|
||| ||||||||||||| | ||| |||||||| || ||||||||||| ||||||||||||||||||||| || |||| |||||||| |
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| T |
30068140 |
acccttactagtccctcctaaatgtagagagaacataacaattgatgattattttataaaggaaaagacgagaattatggtaaatgc |
30068054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 13 - 199
Target Start/End: Original strand, 29964995 - 29965181
Alignment:
| Q |
13 |
atgaagtaggaaataaaagaatggttaacgagaaggatctaaagaagttgaattatttagatatggtggttgatgagaccttaagactttatcccgtagc |
112 |
Q |
| |
|
||||||||||||||||||||||||| | ||||| ||| | |||||||||||||| ||||||||||||||||||||||| ||||||||||| || || | |
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| T |
29964995 |
atgaagtaggaaataaaagaatggtcgaagagaatgatttgaagaagttgaattacttagatatggtggttgatgagacattaagactttaccctgttgg |
29965094 |
T |
|
| Q |
113 |
accgttactagtccctcgtgaatctagagagagcacaacaattgatggttattttataaaggaaaagacacgacttatagtaaatgc |
199 |
Q |
| |
|
||| ||| || | |||||||||| |||||| |||| |||||||||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
29965095 |
acccttattacttcctcgtgaatgtagagaaagcataacaattgatggatattttataaaggaaaagacacgagttatagtaaatgc |
29965181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 13 - 199
Target Start/End: Complemental strand, 30009803 - 30009617
Alignment:
| Q |
13 |
atgaagtaggaaataaaagaatggttaacgagaaggatctaaagaagttgaattatttagatatggtggttgatgagaccttaagactttatcccgtagc |
112 |
Q |
| |
|
||||||||||||||||||||||||| | ||||| ||| | |||||||||||||| ||||||||||||||||||||||| ||||||||||| || || | |
|
|
| T |
30009803 |
atgaagtaggaaataaaagaatggtcgaagagaatgatttgaagaagttgaattacttagatatggtggttgatgagacattaagactttaccctgttgg |
30009704 |
T |
|
| Q |
113 |
accgttactagtccctcgtgaatctagagagagcacaacaattgatggttattttataaaggaaaagacacgacttatagtaaatgc |
199 |
Q |
| |
|
||| ||| || | |||||||||| |||||| |||| |||||||||||| |||||||||||||||||||||||| ||||||||||||| |
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|
| T |
30009703 |
acccttattacttcctcgtgaatgtagagaaagcataacaattgatggatattttataaaggaaaagacacgagttatagtaaatgc |
30009617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 13 - 199
Target Start/End: Original strand, 30001159 - 30001345
Alignment:
| Q |
13 |
atgaagtaggaaataaaagaatggttaacgagaaggatctaaagaagttgaattatttagatatggtggttgatgagaccttaagactttatcccgtagc |
112 |
Q |
| |
|
|||||||||||||||| ||||||||| | || |||||| | ||||| || ||||| ||||||||||||||||||| ||||||||||||||||| || || |
|
|
| T |
30001159 |
atgaagtaggaaataagagaatggttgaagaaaaggatttgaagaattttaattacctagatatggtggttgatgaaaccttaagactttatcctgttgc |
30001258 |
T |
|
| Q |
113 |
accgttactagtccctcgtgaatctagagagagcacaacaattgatggttattttataaaggaaaagacacgacttatagtaaatgc |
199 |
Q |
| |
|
||| ||| || |||||||||||| |||||||| || ||||||||||| ||||| |||||| |||||||||||| ||||||||||||| |
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|
| T |
30001259 |
acctttattaatccctcgtgaatgtagagagaacataacaattgatgattattctataaaagaaaagacacgagttatagtaaatgc |
30001345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 13 - 199
Target Start/End: Original strand, 29944794 - 29944980
Alignment:
| Q |
13 |
atgaagtaggaaataaaagaatggttaacgagaaggatctaaagaagttgaattatttagatatggtggttgatgagaccttaagactttatcccgtagc |
112 |
Q |
| |
|
|||||||||||||||| ||||||||| | || |||||| | ||||| || ||||| |||||||||||||||||||| || ||||||||| |||| || | |
|
|
| T |
29944794 |
atgaagtaggaaataagagaatggttgaagaaaaggatttgaagaattttaattacttagatatggtggttgatgaaactttaagacttcatccagtttc |
29944893 |
T |
|
| Q |
113 |
accgttactagtccctcgtgaatctagagagagcacaacaattgatggttattttataaaggaaaagacacgacttatagtaaatgc |
199 |
Q |
| |
|
||| || || |||||||||||| |||||||| || ||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
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|
| T |
29944894 |
acccttcttactccctcgtgaatgtagagagaacataacaattgatggttattttgtaaaggaaaagacacgagttatagtaaatgc |
29944980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 13 - 199
Target Start/End: Original strand, 29946766 - 29946952
Alignment:
| Q |
13 |
atgaagtaggaaataaaagaatggttaacgagaaggatctaaagaagttgaattatttagatatggtggttgatgagaccttaagactttatcccgtagc |
112 |
Q |
| |
|
||||||||||||||||||||||||| | ||||| ||| || ||||||| | ||| ||||||||||||||| |||| || ||||||||||| || || || |
|
|
| T |
29946766 |
atgaagtaggaaataaaagaatggtcgaagagaaagatttagagaagttaagttacttagatatggtggttcatgaaactttaagactttaccctgttgc |
29946865 |
T |
|
| Q |
113 |
accgttactagtccctcgtgaatctagagagagcacaacaattgatggttattttataaaggaaaagacacgacttatagtaaatgc |
199 |
Q |
| |
|
||| || || |||||||||||| ||||||||| | |||||||||||| |||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
29946866 |
acccttgttactccctcgtgaatgtagagagagtataacaattgatggatattttataatggaaaagacacgagttatagtaaatgc |
29946952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 13 - 199
Target Start/End: Original strand, 29953727 - 29953913
Alignment:
| Q |
13 |
atgaagtaggaaataaaagaatggttaacgagaaggatctaaagaagttgaattatttagatatggtggttgatgagaccttaagactttatcccgtagc |
112 |
Q |
| |
|
|||||||||||||| |||||||| || | ||||| ||| || |||| || | ||| ||||| ||||||||| |||| || ||||||||||| || || || |
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|
| T |
29953727 |
atgaagtaggaaatgaaagaatgattgaagagaaagatttagagaacttaagttacttagagatggtggttcatgaaactttaagactttaccctgttgc |
29953826 |
T |
|
| Q |
113 |
accgttactagtccctcgtgaatctagagagagcacaacaattgatggttattttataaaggaaaagacacgacttatagtaaatgc |
199 |
Q |
| |
|
||| ||| || |||||||||||| ||||||||| |||||||||||| |||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
29953827 |
acccttattactccctcgtgaatgtagagagagtgtaacaattgatggatattttataaaggaaaagactcgagttatagtaaatgc |
29953913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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